Wall clock time and date at job start Tue Mar 31 2020 14:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46593 * 2 1 4 4 C 1.52996 * 109.47153 * 120.00138 * 2 1 3 5 5 N 1.46495 * 109.46999 * 175.00048 * 4 2 1 6 6 C 1.46499 * 120.00120 * 270.00067 * 5 4 2 7 7 C 1.36940 * 120.00051 * 89.99969 * 5 4 2 8 8 H 1.08004 * 119.99657 * 23.65899 * 7 5 4 9 9 C 1.38809 * 120.00139 * 203.65597 * 7 5 4 10 10 N 1.31612 * 120.00347 * 11.25338 * 9 7 5 11 11 Si 1.86804 * 119.99837 * 191.24970 * 9 7 5 12 12 H 1.48495 * 109.47037 * 60.00379 * 11 9 7 13 13 H 1.48506 * 109.46867 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47373 * 299.99761 * 11 9 7 15 15 N 1.46497 * 109.46911 * 240.00424 * 2 1 3 16 16 C 1.34777 * 120.00191 * 84.99944 * 15 2 1 17 17 O 1.21622 * 120.00052 * 359.97438 * 16 15 2 18 18 C 1.47257 * 120.00070 * 179.97438 * 16 15 2 19 19 N 1.30560 * 125.54133 * 180.29644 * 18 16 15 20 20 C 1.30697 * 115.90807 * 180.19638 * 19 18 16 21 21 C 1.50696 * 122.11262 * 179.75704 * 20 19 18 22 22 C 1.52992 * 109.47763 * 254.72054 * 21 20 19 23 23 C 1.53000 * 109.47093 * 134.71365 * 21 20 19 24 24 C 1.53006 * 109.46854 * 14.72140 * 21 20 19 25 25 C 1.34236 * 115.78068 * 359.49541 * 20 19 18 26 26 S 1.71070 * 109.09047 * 0.26808 * 25 20 19 27 27 H 1.08997 * 109.46724 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47116 * 299.99431 * 1 2 3 29 29 H 1.08994 * 109.47024 * 60.00027 * 1 2 3 30 30 H 1.08994 * 109.47267 * 295.00210 * 4 2 1 31 31 H 1.09001 * 109.46831 * 55.00293 * 4 2 1 32 32 H 1.09004 * 109.47203 * 94.60430 * 6 5 4 33 33 H 1.09002 * 109.47520 * 214.59646 * 6 5 4 34 34 H 1.08994 * 109.47043 * 334.59968 * 6 5 4 35 35 H 0.96995 * 120.00640 * 179.97438 * 10 9 7 36 36 H 0.96996 * 120.00355 * 264.99422 * 15 2 1 37 37 H 1.09003 * 109.46910 * 299.99528 * 22 21 20 38 38 H 1.08996 * 109.47365 * 59.99561 * 22 21 20 39 39 H 1.09005 * 109.47514 * 180.02562 * 22 21 20 40 40 H 1.09005 * 109.47318 * 180.02562 * 23 21 20 41 41 H 1.09000 * 109.47556 * 300.00972 * 23 21 20 42 42 H 1.09003 * 109.47065 * 60.00788 * 23 21 20 43 43 H 1.08996 * 109.46705 * 299.99479 * 24 21 20 44 44 H 1.09000 * 109.46879 * 59.99589 * 24 21 20 45 45 H 1.09005 * 109.46879 * 179.97438 * 24 21 20 46 46 H 1.08003 * 125.45231 * 180.23054 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1259 -1.9919 0.5611 7 6 4.2799 0.1649 1.7239 8 1 3.8836 0.8066 2.4970 9 6 5.5797 0.3448 1.2712 10 7 5.9916 -0.2791 0.1880 11 14 6.7442 1.4727 2.1992 12 1 6.9138 0.9748 3.5879 13 1 8.0625 1.4936 1.5158 14 1 6.1820 2.8468 2.2311 15 7 2.0183 -0.6905 -1.1962 16 6 2.1470 -0.0181 -2.3572 17 8 1.8574 1.1618 -2.4118 18 6 2.6384 -0.7121 -3.5594 19 7 2.8092 -0.1674 -4.7336 20 6 3.2523 -0.9614 -5.6724 21 6 3.4944 -0.4806 -7.0800 22 6 2.3815 -0.9973 -7.9940 23 6 4.8443 -1.0054 -7.5731 24 6 3.5032 1.0493 -7.1019 25 6 3.4835 -2.2309 -5.3025 26 16 3.0985 -2.4096 -3.6453 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.7517 -0.1584 2.1369 31 1 1.6054 -1.7198 1.2950 32 1 4.3544 -1.7636 -0.4800 33 1 5.0467 -2.2394 1.0892 34 1 3.4423 -2.8396 0.6056 35 1 6.8997 -0.1531 -0.1286 36 1 2.2491 -1.6316 -1.1528 37 1 2.3753 -2.0872 -7.9784 38 1 1.4199 -0.6234 -7.6427 39 1 2.5569 -0.6499 -9.0122 40 1 5.0196 -0.6573 -8.5911 41 1 5.6371 -0.6373 -6.9220 42 1 4.8381 -2.0953 -7.5576 43 1 2.5415 1.4231 -6.7506 44 1 4.2960 1.4174 -6.4507 45 1 3.6787 1.3971 -8.1200 46 1 3.8528 -3.0141 -5.9479 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754313243.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:23 Heat of formation + Delta-G solvation = 22.071677 kcal Electronic energy + Delta-G solvation = -26288.050994 eV Core-core repulsion = 22726.221893 eV Total energy + Delta-G solvation = -3561.829101 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.37152 -39.08492 -36.47935 -35.84861 -34.06083 -31.51535 -30.52005 -29.75221 -27.49299 -27.38249 -26.20995 -25.81948 -25.51480 -22.99730 -21.52354 -20.19510 -19.92792 -18.93090 -17.86159 -16.82238 -16.59638 -15.69709 -15.35372 -15.16683 -14.82688 -14.35631 -14.02807 -13.95567 -13.73034 -13.30967 -13.29889 -13.18980 -12.85465 -12.37575 -12.22055 -12.19718 -12.15114 -11.97184 -11.71989 -11.45951 -11.13909 -11.01316 -10.97773 -10.84624 -10.82131 -10.78361 -10.57889 -10.25173 -10.05840 -9.96526 -9.85683 -9.54155 -9.33674 -8.73484 -8.57240 -8.42805 -6.76702 -5.73565 -3.20204 0.43069 1.34079 1.74234 2.56136 3.25592 3.40594 3.45929 3.46245 3.64882 4.34523 4.50854 4.70336 4.90293 4.94428 5.11245 5.21401 5.33265 5.34158 5.46291 5.47328 5.61634 5.64586 5.65809 5.80947 5.81543 5.83411 5.89480 5.95850 5.96478 6.07350 6.19351 6.20277 6.23189 6.43985 6.44814 6.49442 6.59979 6.82725 7.02891 7.28397 7.62883 7.66570 7.79999 7.99107 8.38280 8.59971 9.21895 9.84002 10.31898 11.31704 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.013375 B = 0.003993 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.983273 B = 7010.850979 C = 7842.093466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.118 3.882 3 H 0.090 0.910 4 C 0.142 3.858 5 N -0.597 5.597 6 C 0.159 3.841 7 C -0.260 4.260 8 H 0.068 0.932 9 C 0.008 3.992 10 N -0.904 5.904 11 Si 0.904 3.096 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.283 1.283 15 N -0.687 5.687 16 C 0.597 3.403 17 O -0.511 6.511 18 C 0.017 3.983 19 N -0.398 5.398 20 C 0.069 3.931 21 C 0.005 3.995 22 C -0.136 4.136 23 C -0.140 4.140 24 C -0.131 4.131 25 C -0.274 4.274 26 S 0.183 5.817 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.031 0.969 33 H 0.044 0.956 34 H -0.005 1.005 35 H 0.252 0.748 36 H 0.394 0.606 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.578 -7.714 -12.796 16.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.011 3.989 3 H 0.109 0.891 4 C 0.014 3.986 5 N -0.319 5.319 6 C 0.015 3.985 7 C -0.389 4.389 8 H 0.086 0.914 9 C -0.191 4.191 10 N -0.549 5.549 11 Si 0.734 3.266 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.209 1.209 15 N -0.338 5.338 16 C 0.377 3.623 17 O -0.386 6.386 18 C -0.260 4.260 19 N -0.114 5.114 20 C -0.069 4.069 21 C 0.002 3.998 22 C -0.194 4.194 23 C -0.197 4.197 24 C -0.189 4.189 25 C -0.415 4.415 26 S 0.439 5.561 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.013 0.987 35 H 0.062 0.938 36 H 0.228 0.772 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -7.696 -7.142 -12.154 16.061 hybrid contribution 1.253 0.388 -0.563 1.427 sum -6.443 -6.754 -12.717 15.775 Atomic orbital electron populations 1.22171 0.96482 1.01317 1.02001 1.22014 0.91917 0.99347 0.85608 0.89147 1.21226 0.85872 0.97322 0.94209 1.43886 0.99015 1.20884 1.68132 1.20876 0.94693 0.85075 0.97896 1.19129 0.94622 1.10745 1.14413 0.91388 1.25010 0.98877 0.98938 0.96251 1.70009 1.17341 1.45542 1.21969 0.86356 0.80327 0.80831 0.79128 1.21088 1.21708 1.20897 1.45602 1.65855 1.13489 1.08810 1.16595 0.78383 0.86020 0.81263 1.90798 1.49416 1.14346 1.84012 1.27649 1.07434 0.93763 0.97166 1.66442 1.11743 1.34793 0.98395 1.20150 1.01268 0.88809 0.96674 1.19174 0.96008 0.96891 0.87737 1.21876 0.97982 1.00814 0.98703 1.21934 0.95733 1.00837 1.01237 1.21728 1.03469 0.92822 1.00885 1.26384 1.11869 1.02486 1.00769 1.83869 1.55908 1.12053 1.04250 0.93022 0.91714 0.92800 0.91887 0.93862 0.95077 0.93701 0.98656 0.93769 0.77192 0.92598 0.92318 0.91918 0.91855 0.92147 0.92488 0.91559 0.92284 0.92833 0.80366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.48 37.16 0.35 -2.02 16 2 C 0.12 2.19 2.88 -67.93 -0.20 2.00 16 3 H 0.09 2.02 7.58 -51.93 -0.39 1.63 16 4 C 0.14 2.68 5.33 -4.05 -0.02 2.66 16 5 N -0.60 -14.10 2.78 -181.13 -0.50 -14.61 16 6 C 0.16 3.62 7.60 59.85 0.46 4.08 16 7 C -0.26 -6.96 9.66 -15.06 -0.15 -7.10 16 8 H 0.07 1.79 7.85 -52.48 -0.41 1.38 16 9 C 0.01 0.22 5.13 -17.43 -0.09 0.13 16 10 N -0.90 -25.92 10.66 55.49 0.59 -25.33 16 11 Si 0.90 22.05 29.57 -169.99 -5.03 17.02 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 N -0.69 -12.83 4.41 -54.93 -0.24 -13.07 16 16 C 0.60 12.33 7.77 -12.59 -0.10 12.23 16 17 O -0.51 -12.26 16.73 5.26 0.09 -12.17 16 18 C 0.02 0.31 7.46 -14.43 -0.11 0.20 16 19 N -0.40 -7.23 9.52 -7.69 -0.07 -7.31 16 20 C 0.07 1.01 5.38 -84.49 -0.45 0.56 16 21 C 0.00 0.05 0.90 -155.66 -0.14 -0.08 16 22 C -0.14 -1.30 8.42 37.15 0.31 -0.99 16 23 C -0.14 -1.36 8.12 37.16 0.30 -1.06 16 24 C -0.13 -1.66 7.89 37.16 0.29 -1.37 16 25 C -0.27 -3.47 10.10 29.32 0.30 -3.17 16 26 S 0.18 2.55 22.31 -107.50 -2.40 0.15 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.15 8.03 -51.93 -0.42 0.73 16 31 H 0.04 0.71 7.86 -51.93 -0.41 0.30 16 32 H 0.03 0.75 6.90 -51.93 -0.36 0.40 16 33 H 0.04 1.13 7.30 -51.93 -0.38 0.75 16 34 H -0.01 -0.10 7.84 -51.93 -0.41 -0.50 16 35 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.39 6.72 6.32 -40.82 -0.26 6.46 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.48 7.07 -51.93 -0.37 0.11 16 43 H 0.07 0.93 7.95 -51.93 -0.41 0.52 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.18 1.67 7.23 -52.48 -0.38 1.29 16 LS Contribution 385.09 15.07 5.80 5.80 Total: -1.00 -32.46 385.09 -8.56 -41.01 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -7.56 Total: 2.43 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 0.76 Total: 6.06 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -0.23 Total: -60.31 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.09 Total: -12.17 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -2.40 Total: 0.15 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.46 -8.56 -41.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754313243.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.083 kcal (2) G-P(sol) polarization free energy of solvation -32.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds