Wall clock time and date at job start Tue Mar 31 2020 14:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46738 * 2 1 4 4 C 1.53004 * 109.47065 * 240.00130 * 2 1 3 5 5 N 1.46496 * 109.46923 * 184.99485 * 4 2 1 6 6 C 1.46488 * 120.00383 * 270.00173 * 5 4 2 7 7 C 1.36942 * 119.99418 * 90.00474 * 5 4 2 8 8 H 1.07994 * 120.00416 * 22.28768 * 7 5 4 9 9 C 1.38818 * 119.99447 * 202.28681 * 7 5 4 10 10 N 1.31617 * 120.00196 * 11.47336 * 9 7 5 11 11 Si 1.86800 * 119.99593 * 191.47265 * 9 7 5 12 12 H 1.48502 * 109.47420 * 60.00117 * 11 9 7 13 13 H 1.48498 * 109.47019 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47284 * 299.99870 * 11 9 7 15 15 N 1.46497 * 109.47240 * 120.00337 * 2 1 3 16 16 C 1.34786 * 119.99910 * 275.00204 * 15 2 1 17 17 O 1.21613 * 119.99723 * 359.97438 * 16 15 2 18 18 C 1.47258 * 119.99882 * 180.02562 * 16 15 2 19 19 N 1.30553 * 125.53808 * 180.27383 * 18 16 15 20 20 C 1.30704 * 115.90517 * 180.17900 * 19 18 16 21 21 C 1.50699 * 122.11254 * 179.80641 * 20 19 18 22 22 C 1.53002 * 109.47081 * 254.71123 * 21 20 19 23 23 C 1.52999 * 109.47472 * 134.70336 * 21 20 19 24 24 C 1.53005 * 109.46966 * 14.70354 * 21 20 19 25 25 C 1.34234 * 115.78502 * 359.52645 * 20 19 18 26 26 S 1.71076 * 109.08698 * 0.25325 * 25 20 19 27 27 H 1.09002 * 109.47183 * 299.99139 * 1 2 3 28 28 H 1.08997 * 109.47525 * 59.99785 * 1 2 3 29 29 H 1.09002 * 109.46738 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47124 * 305.00315 * 4 2 1 31 31 H 1.09004 * 109.46525 * 64.99741 * 4 2 1 32 32 H 1.08996 * 109.47518 * 94.22382 * 6 5 4 33 33 H 1.09004 * 109.47213 * 214.22358 * 6 5 4 34 34 H 1.09003 * 109.47224 * 334.22663 * 6 5 4 35 35 H 0.96998 * 119.99704 * 179.97438 * 10 9 7 36 36 H 0.97001 * 120.00136 * 94.99865 * 15 2 1 37 37 H 1.09001 * 109.46307 * 299.99240 * 22 21 20 38 38 H 1.08995 * 109.47529 * 59.99029 * 22 21 20 39 39 H 1.08995 * 109.47115 * 179.97438 * 22 21 20 40 40 H 1.09004 * 109.46792 * 179.97438 * 23 21 20 41 41 H 1.09001 * 109.47557 * 300.00127 * 23 21 20 42 42 H 1.08996 * 109.47032 * 60.00555 * 23 21 20 43 43 H 1.08997 * 109.47532 * 300.00716 * 24 21 20 44 44 H 1.09001 * 109.46893 * 60.00589 * 24 21 20 45 45 H 1.08995 * 109.47055 * 180.02562 * 24 21 20 46 46 H 1.07994 * 125.45703 * 180.22099 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8262 -1.1907 6 6 4.3342 0.2341 -1.7613 7 6 4.0850 -1.9158 -0.6024 8 1 3.5336 -2.8396 -0.5081 9 6 5.3867 -1.8327 -0.1274 10 7 5.9796 -0.6614 -0.0336 11 14 6.2969 -3.3835 0.3787 12 1 6.3975 -4.3006 -0.7850 13 1 7.6600 -3.0267 0.8476 14 1 5.5566 -4.0561 1.4764 15 7 2.0184 -0.6907 1.1961 16 6 2.1471 -0.0183 2.3572 17 8 1.8582 1.1617 2.4117 18 6 2.6385 -0.7124 3.5593 19 7 2.7994 -0.1704 4.7361 20 6 3.2519 -0.9621 5.6724 21 6 3.4936 -0.4816 7.0802 22 6 4.9974 -0.3246 7.3144 23 6 2.9265 -1.5000 8.0712 24 6 2.8021 0.8680 7.2841 25 6 3.4823 -2.2318 5.3026 26 16 3.0975 -2.4103 3.6453 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6054 -1.7197 -1.2953 31 1 1.7516 -0.1582 -2.1370 32 1 4.6021 0.9457 -0.9803 33 1 5.2404 -0.2027 -2.1811 34 1 3.7810 0.7485 -2.5471 35 1 6.8890 -0.6034 0.2987 36 1 2.2491 -1.6318 1.1525 37 1 5.4899 -1.2860 7.1691 38 1 5.4013 0.4009 6.6083 39 1 5.1721 0.0234 8.3324 40 1 3.1018 -1.1526 9.0894 41 1 1.8552 -1.6118 7.9044 42 1 3.4192 -2.4614 7.9260 43 1 3.2059 1.5936 6.5781 44 1 1.7308 0.7562 7.1173 45 1 2.9773 1.2158 8.3022 46 1 3.8519 -3.0149 5.9478 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754313244.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:25 Heat of formation + Delta-G solvation = 21.115088 kcal Electronic energy + Delta-G solvation = -26555.620012 eV Core-core repulsion = 22993.749430 eV Total energy + Delta-G solvation = -3561.870582 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.27051 -38.98228 -36.43513 -35.78459 -34.02375 -31.55869 -30.43503 -29.64052 -27.45401 -27.30178 -26.21426 -25.67175 -25.57744 -22.91434 -21.57168 -20.07872 -19.82604 -18.82065 -17.81402 -16.81454 -16.41035 -15.67737 -15.29417 -15.09100 -14.85078 -14.33309 -13.90749 -13.85037 -13.79402 -13.41700 -13.13520 -12.96773 -12.87658 -12.33071 -12.22758 -12.14056 -12.08675 -11.91813 -11.67237 -11.43274 -11.32381 -10.96493 -10.92719 -10.88633 -10.77360 -10.70303 -10.44410 -10.29752 -10.12146 -9.90402 -9.87100 -9.42258 -9.23753 -8.61277 -8.59119 -8.34111 -6.82461 -5.78270 -3.24818 0.54139 1.47334 1.88087 2.65095 3.28580 3.36690 3.37193 3.38339 3.75037 4.41079 4.43891 4.76521 4.95672 5.03926 5.19741 5.29189 5.32744 5.42184 5.47395 5.51640 5.63021 5.65651 5.71515 5.83559 5.84207 5.89755 5.93901 5.94792 6.02665 6.12956 6.19972 6.27059 6.28904 6.40791 6.46913 6.48614 6.72635 6.84125 7.11026 7.36510 7.66387 7.77373 7.78253 8.14613 8.32207 8.72026 9.16094 9.80044 10.30085 11.25616 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.012416 B = 0.004950 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.600084 B = 5655.439460 C = 6947.476760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.119 3.881 3 H 0.081 0.919 4 C 0.141 3.859 5 N -0.598 5.598 6 C 0.163 3.837 7 C -0.262 4.262 8 H 0.066 0.934 9 C 0.012 3.988 10 N -0.896 5.896 11 Si 0.887 3.113 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.277 1.277 15 N -0.676 5.676 16 C 0.596 3.404 17 O -0.521 6.521 18 C 0.016 3.984 19 N -0.401 5.401 20 C 0.068 3.932 21 C 0.005 3.995 22 C -0.138 4.138 23 C -0.138 4.138 24 C -0.130 4.130 25 C -0.280 4.280 26 S 0.195 5.805 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.028 0.972 33 H 0.045 0.955 34 H -0.003 1.003 35 H 0.253 0.747 36 H 0.403 0.597 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.056 0.944 45 H 0.052 0.948 46 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.163 -3.837 10.538 13.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.012 3.988 3 H 0.099 0.901 4 C 0.013 3.987 5 N -0.321 5.321 6 C 0.019 3.981 7 C -0.392 4.392 8 H 0.084 0.916 9 C -0.188 4.188 10 N -0.540 5.540 11 Si 0.717 3.283 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.203 1.203 15 N -0.327 5.327 16 C 0.377 3.623 17 O -0.398 6.398 18 C -0.260 4.260 19 N -0.117 5.117 20 C -0.071 4.071 21 C 0.002 3.998 22 C -0.196 4.196 23 C -0.195 4.195 24 C -0.187 4.187 25 C -0.421 4.421 26 S 0.452 5.548 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.015 0.985 35 H 0.064 0.936 36 H 0.239 0.761 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -7.282 -3.223 9.854 12.669 hybrid contribution 1.188 -1.073 1.276 2.047 sum -6.093 -4.295 11.130 13.396 Atomic orbital electron populations 1.22175 0.96499 1.01487 1.01860 1.21967 0.92044 0.98565 0.86225 0.90059 1.21214 0.86030 0.97997 0.93466 1.43889 0.98865 1.22661 1.66646 1.20805 0.92987 0.90436 0.93885 1.19023 0.97231 0.89460 1.33445 0.91611 1.24974 0.98583 0.96015 0.99236 1.70052 1.13441 1.21591 1.48889 0.86598 0.79619 0.83305 0.78790 1.20919 1.21605 1.20311 1.45545 1.64840 1.14186 1.08122 1.16607 0.78363 0.85965 0.81394 1.90769 1.50237 1.14491 1.84263 1.27623 1.07382 0.94010 0.97015 1.66452 1.12040 1.34829 0.98361 1.20119 1.01365 0.88891 0.96733 1.19163 0.96430 0.96442 0.87737 1.21889 0.93710 1.02204 1.01789 1.21915 1.01081 0.98220 0.98322 1.21709 1.00601 0.95495 1.00913 1.26420 1.12156 1.02518 1.01045 1.84169 1.55429 1.11755 1.03442 0.92772 0.91895 0.92841 0.93185 0.92581 0.95355 0.93661 0.98490 0.93617 0.76119 0.92550 0.92124 0.91967 0.91913 0.92391 0.92510 0.91475 0.92515 0.92906 0.80519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.48 37.16 0.35 -2.02 16 2 C 0.12 2.20 2.88 -67.93 -0.20 2.01 16 3 H 0.08 1.72 7.58 -51.93 -0.39 1.33 16 4 C 0.14 2.63 5.36 -4.04 -0.02 2.61 16 5 N -0.60 -13.91 2.82 -181.13 -0.51 -14.42 16 6 C 0.16 3.92 9.01 59.84 0.54 4.46 16 7 C -0.26 -6.48 8.02 -15.05 -0.12 -6.60 16 8 H 0.07 1.55 7.84 -52.49 -0.41 1.14 16 9 C 0.01 0.31 5.13 -17.43 -0.09 0.22 16 10 N -0.90 -25.14 10.59 55.49 0.59 -24.55 16 11 Si 0.89 20.48 29.57 -169.99 -5.03 15.45 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 15 N -0.68 -13.27 4.48 -54.93 -0.25 -13.52 16 16 C 0.60 12.74 7.77 -12.59 -0.10 12.64 16 17 O -0.52 -12.58 16.73 5.27 0.09 -12.49 16 18 C 0.02 0.32 7.46 -14.43 -0.11 0.21 16 19 N -0.40 -7.66 9.52 -7.69 -0.07 -7.73 16 20 C 0.07 1.06 5.38 -84.48 -0.45 0.61 16 21 C 0.01 0.06 0.90 -155.66 -0.14 -0.08 16 22 C -0.14 -1.59 8.42 37.16 0.31 -1.28 16 23 C -0.14 -1.34 8.12 37.16 0.30 -1.04 16 24 C -0.13 -1.65 7.89 37.16 0.29 -1.36 16 25 C -0.28 -4.01 10.10 29.32 0.30 -3.71 16 26 S 0.20 3.17 22.31 -107.50 -2.40 0.78 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 31 H 0.06 0.94 7.86 -51.93 -0.41 0.54 16 32 H 0.03 0.76 7.42 -51.93 -0.39 0.37 16 33 H 0.04 1.16 7.19 -51.93 -0.37 0.79 16 34 H 0.00 -0.07 7.84 -51.93 -0.41 -0.48 16 35 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.40 7.69 6.54 -40.82 -0.27 7.42 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.50 7.07 -51.93 -0.37 0.13 16 43 H 0.07 0.99 7.95 -51.93 -0.41 0.58 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.18 1.95 7.23 -52.49 -0.38 1.57 16 LS Contribution 385.56 15.07 5.81 5.81 Total: -1.00 -30.73 385.56 -8.49 -39.21 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -7.59 Total: 4.80 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 0.87 Total: 6.66 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: -0.24 Total: -60.22 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.09 Total: -12.49 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.45 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -2.40 Total: 0.78 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.73 -8.49 -39.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754313244.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.326 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds