Wall clock time and date at job start Tue Mar 31 2020 14:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38235 * 120.00168 * 2 1 4 4 C 1.38239 * 120.00059 * 179.97438 * 3 2 1 5 5 C 1.38229 * 120.00039 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99913 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47500 * 89.99921 * 6 5 4 8 8 N 1.46498 * 109.47584 * 179.97438 * 7 6 5 9 9 C 1.39664 * 120.00039 * 179.97438 * 8 7 6 10 10 C 1.38973 * 120.04703 * 359.97438 * 9 8 7 11 11 C 1.38116 * 120.03003 * 180.02562 * 10 9 8 12 12 C 1.38216 * 120.13578 * 359.74695 * 11 10 9 13 13 C 1.38779 * 120.08401 * 0.51068 * 12 11 10 14 14 O 1.35897 * 120.00949 * 179.76812 * 13 12 11 15 15 C 1.42898 * 117.00481 * 359.71829 * 14 13 12 16 16 C 1.52997 * 109.47319 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46838 * 89.99826 * 21 19 17 23 23 H 1.48497 * 109.47419 * 209.99978 * 21 19 17 24 24 H 1.48499 * 109.47011 * 330.00539 * 21 19 17 25 25 C 1.38609 * 119.96517 * 359.48769 * 13 12 11 26 26 C 1.38236 * 120.00077 * 0.24871 * 5 4 3 27 27 C 1.38237 * 120.00032 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47237 * 89.99799 * 1 2 3 29 29 H 1.09005 * 109.46877 * 210.00049 * 1 2 3 30 30 H 1.08998 * 109.46999 * 329.99493 * 1 2 3 31 31 H 1.07999 * 119.99963 * 359.97438 * 3 2 1 32 32 H 1.08007 * 119.99603 * 179.97438 * 4 3 2 33 33 H 1.08997 * 109.47135 * 329.99654 * 6 5 4 34 34 H 1.09008 * 109.47310 * 209.99629 * 6 5 4 35 35 H 1.09006 * 109.47286 * 59.99607 * 7 6 5 36 36 H 1.09008 * 109.46600 * 300.00142 * 7 6 5 37 37 H 0.97000 * 119.99514 * 359.97438 * 8 7 6 38 38 H 1.07996 * 119.98339 * 0.02562 * 10 9 8 39 39 H 1.08007 * 119.92769 * 179.97438 * 11 10 9 40 40 H 1.07991 * 119.95689 * 180.26971 * 12 11 10 41 41 H 1.09002 * 109.47259 * 300.00417 * 15 14 13 42 42 H 1.09001 * 109.47074 * 60.00439 * 15 14 13 43 43 H 1.09002 * 109.47153 * 300.00307 * 16 15 14 44 44 H 1.08998 * 109.47533 * 59.99936 * 16 15 14 45 45 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 46 46 H 1.08006 * 120.06150 * 180.23058 * 25 13 12 47 47 H 1.07999 * 120.00264 * 179.72974 * 26 5 4 48 48 H 1.08001 * 119.99918 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 0.0000 0.0005 7 6 6.2888 0.0000 1.4430 8 7 7.7538 -0.0006 1.4430 9 6 8.4521 -0.0001 2.6526 10 6 7.7582 0.0014 3.8567 11 6 8.4491 0.0024 5.0526 12 6 9.8313 -0.0035 5.0555 13 6 10.5294 0.0004 3.8561 14 8 11.8884 -0.0006 3.8607 15 6 12.5329 0.0006 5.1361 16 6 14.0504 -0.0002 4.9407 17 6 14.7301 0.0004 6.2857 18 1 14.1389 0.0008 7.1895 19 6 16.1067 -0.0006 6.3625 20 7 16.8266 -0.0016 5.2619 21 14 16.9493 0.0009 8.0297 22 1 17.1713 -1.3989 8.4733 23 1 18.2553 0.6997 7.9237 24 1 16.0909 0.7028 9.0175 25 6 9.8400 -0.0007 2.6537 26 6 3.5805 -1.1972 -0.0052 27 6 2.1982 -1.1972 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.6582 2.1324 -0.0004 32 1 4.1206 2.1325 0.0001 33 1 6.1420 0.8899 -0.5133 34 1 6.1421 -0.8901 -0.5133 35 1 5.9254 -0.8900 1.9570 36 1 5.9254 0.8901 1.9568 37 1 8.2387 -0.0013 0.6030 38 1 6.6782 0.0019 3.8572 39 1 7.9082 0.0040 5.9874 40 1 10.3685 -0.0071 5.9922 41 1 12.2388 0.8914 5.6910 42 1 12.2376 -0.8885 5.6933 43 1 14.3448 -0.8909 4.3857 44 1 14.3455 0.8890 4.3837 45 1 17.7952 -0.0027 5.3159 46 1 10.3818 -0.0015 1.7193 47 1 4.1205 -2.1325 -0.0096 48 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000486127708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:42 Heat of formation + Delta-G solvation = -11.583092 kcal Electronic energy + Delta-G solvation = -24820.106316 eV Core-core repulsion = 21224.914227 eV Total energy + Delta-G solvation = -3595.192090 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.98772 -39.65006 -37.83049 -35.84097 -33.91130 -33.30203 -31.31776 -31.14154 -30.61601 -29.20598 -28.24815 -26.20847 -24.92434 -23.46633 -23.12516 -22.45861 -21.40702 -20.88985 -20.29060 -18.00048 -16.58631 -16.27452 -16.16601 -16.13844 -15.59947 -15.46485 -15.23862 -15.11990 -14.76131 -14.64475 -14.25689 -14.13206 -13.80659 -13.36776 -13.02894 -12.98627 -12.94550 -12.63395 -12.57531 -12.29395 -12.00135 -11.89393 -11.58464 -11.44924 -11.37869 -11.22996 -11.14606 -10.87539 -10.72127 -10.40987 -9.96918 -9.69068 -9.61168 -9.31286 -9.26188 -8.89758 -8.42213 -7.91357 -7.31052 -6.07509 -4.11840 0.90130 1.01407 1.74679 1.90458 3.17491 3.29545 3.35337 3.37935 3.40064 4.03123 4.15416 4.36177 4.39634 4.45307 4.58299 4.62031 4.65728 4.71492 4.96843 5.07523 5.10822 5.14209 5.16168 5.28568 5.28959 5.37356 5.40611 5.51678 5.55970 5.58237 5.66267 5.70630 5.72913 5.81350 6.01720 6.11413 6.12631 6.15212 6.20046 6.22947 6.43587 6.61482 6.65568 6.70164 6.78329 6.92200 7.39787 7.55228 7.68506 7.68830 7.86761 8.15061 8.28120 8.93877 9.52307 11.04124 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.043918 B = 0.001483 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.405580 B =18873.183893 C =19184.895412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.090 4.090 3 C -0.120 4.120 4 C -0.110 4.110 5 C -0.085 4.085 6 C -0.092 4.092 7 C 0.135 3.865 8 N -0.751 5.751 9 C 0.246 3.754 10 C -0.244 4.244 11 C -0.037 4.037 12 C -0.264 4.264 13 C 0.187 3.813 14 O -0.316 6.316 15 C 0.066 3.934 16 C 0.025 3.975 17 C -0.526 4.526 18 H 0.058 0.942 19 C 0.060 3.940 20 N -0.890 5.890 21 Si 0.899 3.101 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 C -0.238 4.238 26 C -0.110 4.110 27 C -0.120 4.120 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.398 0.602 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.126 0.874 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.027 0.973 44 H 0.027 0.973 45 H 0.263 0.737 46 H 0.124 0.876 47 H 0.123 0.877 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.489 0.006 -12.175 34.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.090 4.090 3 C -0.138 4.138 4 C -0.128 4.128 5 C -0.086 4.086 6 C -0.129 4.129 7 C 0.011 3.989 8 N -0.382 5.382 9 C 0.144 3.856 10 C -0.266 4.266 11 C -0.056 4.056 12 C -0.284 4.284 13 C 0.139 3.861 14 O -0.229 6.229 15 C -0.008 4.008 16 C -0.012 4.012 17 C -0.564 4.564 18 H 0.077 0.923 19 C -0.142 4.142 20 N -0.528 5.528 21 Si 0.726 3.274 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.261 4.261 26 C -0.128 4.128 27 C -0.138 4.138 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.233 0.767 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.144 0.856 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.072 0.928 46 H 0.142 0.858 47 H 0.141 0.859 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -32.353 0.012 -12.354 34.632 hybrid contribution 0.671 -0.010 0.790 1.036 sum -31.682 0.002 -11.564 33.727 Atomic orbital electron populations 1.20803 0.91239 1.02845 1.02323 1.19955 0.96122 0.93263 0.99677 1.21041 0.94168 0.97583 1.00967 1.21074 0.94186 0.97649 0.99861 1.19662 0.94829 0.93336 1.00760 1.20751 0.91490 1.03763 0.96914 1.21219 0.80334 1.01463 0.95916 1.44543 1.04791 1.83404 1.05441 1.17336 0.90023 0.92309 0.85978 1.20392 0.98998 1.16094 0.91139 1.20621 0.93355 0.94523 0.97105 1.21151 0.95057 1.14663 0.97559 1.18821 0.83550 0.90595 0.93135 1.86143 1.15066 1.86709 1.34984 1.23312 0.96345 0.99752 0.81371 1.19125 0.85270 0.98816 0.98018 1.20988 0.91496 1.52088 0.91829 0.92343 1.24986 0.97395 0.94939 0.96846 1.69982 1.05920 1.49827 1.27093 0.86491 0.78918 0.78204 0.83796 1.20512 1.21068 1.19754 1.19667 0.91515 1.17929 0.97006 1.21076 0.94186 0.97645 0.99863 1.21042 0.94168 0.97583 1.00965 0.91188 0.91518 0.91521 0.86067 0.85930 0.90256 0.90256 0.92238 0.92230 0.76709 0.86745 0.86375 0.85578 0.93096 0.93095 0.95446 0.95430 0.92752 0.85765 0.85931 0.86067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.52 10.01 36.00 0.36 -0.16 16 2 C -0.09 -0.61 5.88 -104.62 -0.62 -1.22 16 3 C -0.12 -0.82 9.70 -39.58 -0.38 -1.20 16 4 C -0.11 -0.78 9.70 -39.58 -0.38 -1.16 16 5 C -0.09 -0.62 5.13 -104.63 -0.54 -1.15 16 6 C -0.09 -0.59 5.46 -27.88 -0.15 -0.75 16 7 C 0.14 1.12 4.89 -4.04 -0.02 1.10 16 8 N -0.75 -7.68 5.73 -58.65 -0.34 -8.02 16 9 C 0.25 3.36 6.65 -83.81 -0.56 2.80 16 10 C -0.24 -3.25 9.31 -39.35 -0.37 -3.62 16 11 C -0.04 -0.53 10.03 -39.63 -0.40 -0.92 16 12 C -0.26 -4.40 9.04 -39.39 -0.36 -4.76 16 13 C 0.19 3.45 6.68 -39.24 -0.26 3.18 16 14 O -0.32 -6.78 10.13 -19.42 -0.20 -6.97 16 15 C 0.07 1.47 4.68 37.16 0.17 1.64 16 16 C 0.02 0.66 5.34 -27.89 -0.15 0.52 16 17 C -0.53 -14.87 9.11 -34.44 -0.31 -15.18 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 21 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 C -0.24 -3.81 9.83 -39.24 -0.39 -4.20 16 26 C -0.11 -0.78 9.70 -39.58 -0.38 -1.16 16 27 C -0.12 -0.82 9.70 -39.58 -0.38 -1.20 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 30 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 31 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 32 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 33 H 0.08 0.47 8.09 -51.93 -0.42 0.06 16 34 H 0.08 0.47 8.08 -51.92 -0.42 0.06 16 35 H 0.06 0.52 7.95 -51.93 -0.41 0.10 16 36 H 0.06 0.52 7.95 -51.92 -0.41 0.11 16 37 H 0.40 3.50 8.48 -40.82 -0.35 3.15 16 38 H 0.11 1.30 6.73 -52.49 -0.35 0.94 16 39 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 40 H 0.13 2.08 6.29 -52.49 -0.33 1.75 16 41 H 0.05 1.08 7.67 -51.93 -0.40 0.68 16 42 H 0.05 1.08 7.65 -51.93 -0.40 0.68 16 43 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.12 1.87 8.06 -52.48 -0.42 1.45 16 47 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 48 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 LS Contribution 400.21 15.07 6.03 6.03 Total: -1.00 -31.71 400.21 -11.67 -43.38 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -7.68 Total: 0.94 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -5.21 Total: -25.82 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.40 Total: -34.00 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.20 Total: -6.97 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.71 -11.67 -43.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000486127708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.801 kcal (2) G-P(sol) polarization free energy of solvation -31.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds