Wall clock time and date at job start Tue Mar 31 2020 14:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38235 * 120.00168 * 2 1 4 4 C 1.38239 * 120.00059 * 179.97438 * 3 2 1 5 5 C 1.38229 * 120.00039 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99913 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47500 * 89.99921 * 6 5 4 8 8 N 1.46498 * 109.47584 * 179.97438 * 7 6 5 9 9 C 1.39664 * 120.00039 * 179.97438 * 8 7 6 10 10 C 1.38973 * 120.04703 * 359.97438 * 9 8 7 11 11 C 1.38116 * 120.03003 * 180.02562 * 10 9 8 12 12 C 1.38216 * 120.13578 * 359.74695 * 11 10 9 13 13 C 1.38779 * 120.08401 * 0.51068 * 12 11 10 14 14 O 1.35897 * 120.00949 * 179.76812 * 13 12 11 15 15 C 1.42898 * 117.00481 * 359.71829 * 14 13 12 16 16 C 1.52997 * 109.47319 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46838 * 89.99826 * 21 19 17 23 23 H 1.48497 * 109.47419 * 209.99978 * 21 19 17 24 24 H 1.48499 * 109.47011 * 330.00539 * 21 19 17 25 25 C 1.38609 * 119.96517 * 359.48769 * 13 12 11 26 26 C 1.38236 * 120.00077 * 0.24871 * 5 4 3 27 27 C 1.38237 * 120.00032 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47237 * 89.99799 * 1 2 3 29 29 H 1.09005 * 109.46877 * 210.00049 * 1 2 3 30 30 H 1.08998 * 109.46999 * 329.99493 * 1 2 3 31 31 H 1.07999 * 119.99963 * 359.97438 * 3 2 1 32 32 H 1.08007 * 119.99603 * 179.97438 * 4 3 2 33 33 H 1.08997 * 109.47135 * 329.99654 * 6 5 4 34 34 H 1.09008 * 109.47310 * 209.99629 * 6 5 4 35 35 H 1.09006 * 109.47286 * 59.99607 * 7 6 5 36 36 H 1.09008 * 109.46600 * 300.00142 * 7 6 5 37 37 H 0.97000 * 119.99514 * 359.97438 * 8 7 6 38 38 H 1.07996 * 119.98339 * 0.02562 * 10 9 8 39 39 H 1.08007 * 119.92769 * 179.97438 * 11 10 9 40 40 H 1.07991 * 119.95689 * 180.26971 * 12 11 10 41 41 H 1.09002 * 109.47259 * 300.00417 * 15 14 13 42 42 H 1.09001 * 109.47074 * 60.00439 * 15 14 13 43 43 H 1.09002 * 109.47153 * 300.00307 * 16 15 14 44 44 H 1.08998 * 109.47533 * 59.99936 * 16 15 14 45 45 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 46 46 H 1.08006 * 120.06150 * 180.23058 * 25 13 12 47 47 H 1.07999 * 120.00264 * 179.72974 * 26 5 4 48 48 H 1.08001 * 119.99918 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 0.0000 0.0005 7 6 6.2888 0.0000 1.4430 8 7 7.7538 -0.0006 1.4430 9 6 8.4521 -0.0001 2.6526 10 6 7.7582 0.0014 3.8567 11 6 8.4491 0.0024 5.0526 12 6 9.8313 -0.0035 5.0555 13 6 10.5294 0.0004 3.8561 14 8 11.8884 -0.0006 3.8607 15 6 12.5329 0.0006 5.1361 16 6 14.0504 -0.0002 4.9407 17 6 14.7301 0.0004 6.2857 18 1 14.1389 0.0008 7.1895 19 6 16.1067 -0.0006 6.3625 20 7 16.8266 -0.0016 5.2619 21 14 16.9493 0.0009 8.0297 22 1 17.1713 -1.3989 8.4733 23 1 18.2553 0.6997 7.9237 24 1 16.0909 0.7028 9.0175 25 6 9.8400 -0.0007 2.6537 26 6 3.5805 -1.1972 -0.0052 27 6 2.1982 -1.1972 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.6582 2.1324 -0.0004 32 1 4.1206 2.1325 0.0001 33 1 6.1420 0.8899 -0.5133 34 1 6.1421 -0.8901 -0.5133 35 1 5.9254 -0.8900 1.9570 36 1 5.9254 0.8901 1.9568 37 1 8.2387 -0.0013 0.6030 38 1 6.6782 0.0019 3.8572 39 1 7.9082 0.0040 5.9874 40 1 10.3685 -0.0071 5.9922 41 1 12.2388 0.8914 5.6910 42 1 12.2376 -0.8885 5.6933 43 1 14.3448 -0.8909 4.3857 44 1 14.3455 0.8890 4.3837 45 1 17.7952 -0.0027 5.3159 46 1 10.3818 -0.0015 1.7193 47 1 4.1205 -2.1325 -0.0096 48 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000486127708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:41 Heat of formation + Delta-G solvation = -26.940478 kcal Electronic energy + Delta-G solvation = -24820.772262 eV Core-core repulsion = 21224.914227 eV Total energy + Delta-G solvation = -3595.858036 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.03959 -40.39224 -39.07859 -36.75558 -35.44762 -34.55858 -32.57077 -31.79293 -31.78134 -30.54627 -29.18989 -27.16614 -26.56598 -24.26606 -23.84284 -23.60516 -22.76627 -21.72801 -21.44514 -19.35981 -18.32637 -17.32102 -17.08136 -16.91156 -16.75389 -16.65184 -16.51066 -16.38345 -15.93759 -15.43778 -15.36518 -14.61601 -14.47052 -14.32570 -14.31880 -14.23792 -14.11743 -13.53601 -13.43090 -13.40955 -13.17832 -13.02161 -12.73050 -12.54636 -12.49827 -12.32005 -12.30783 -11.96273 -11.89062 -11.78382 -11.59678 -11.54386 -11.37224 -10.84053 -10.61108 -9.80950 -9.38536 -9.21835 -8.35589 -8.25842 -6.39580 0.40411 0.51830 0.56886 0.69223 1.41589 1.44035 1.55246 2.16715 2.40475 2.72177 2.87241 2.96210 3.08582 3.89464 3.90328 3.99778 4.08081 4.13955 4.17525 4.18669 4.26824 4.29289 4.29749 4.35739 4.52401 4.53294 4.58078 4.62016 4.68513 4.75743 4.83469 4.83863 4.91370 4.97621 5.00276 5.11200 5.23111 5.29054 5.32198 5.34032 5.48050 5.52102 5.53515 5.63562 5.67121 5.72438 5.73611 5.76761 6.08104 6.14697 6.38889 6.62304 6.75148 6.81874 7.30560 8.87370 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.043918 B = 0.001483 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.405580 B =18873.183893 C =19184.895412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.100 4.100 3 C -0.131 4.131 4 C -0.120 4.120 5 C -0.095 4.095 6 C -0.082 4.082 7 C 0.136 3.864 8 N -0.740 5.740 9 C 0.252 3.748 10 C -0.238 4.238 11 C -0.032 4.032 12 C -0.281 4.281 13 C 0.152 3.848 14 O -0.342 6.342 15 C 0.086 3.914 16 C 0.028 3.972 17 C -0.547 4.547 18 H 0.071 0.929 19 C 0.002 3.998 20 N -0.931 5.931 21 Si 0.977 3.023 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.259 1.259 25 C -0.252 4.252 26 C -0.120 4.120 27 C -0.131 4.131 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.406 0.594 38 H 0.141 0.859 39 H 0.149 0.851 40 H 0.122 0.878 41 H 0.059 0.941 42 H 0.059 0.941 43 H -0.002 1.002 44 H -0.002 1.002 45 H 0.267 0.733 46 H 0.124 0.876 47 H 0.131 0.869 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.975 0.006 -11.266 36.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.100 4.100 3 C -0.149 4.149 4 C -0.138 4.138 5 C -0.096 4.096 6 C -0.120 4.120 7 C 0.012 3.988 8 N -0.370 5.370 9 C 0.147 3.853 10 C -0.261 4.261 11 C -0.051 4.051 12 C -0.302 4.302 13 C 0.105 3.895 14 O -0.256 6.256 15 C 0.012 3.988 16 C -0.009 4.009 17 C -0.585 4.585 18 H 0.089 0.911 19 C -0.196 4.196 20 N -0.570 5.570 21 Si 0.800 3.200 22 H -0.195 1.195 23 H -0.206 1.206 24 H -0.183 1.183 25 C -0.275 4.275 26 C -0.138 4.138 27 C -0.149 4.149 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.242 0.758 38 H 0.159 0.841 39 H 0.167 0.833 40 H 0.140 0.860 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.016 0.984 44 H 0.017 0.983 45 H 0.075 0.925 46 H 0.142 0.858 47 H 0.149 0.851 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -34.889 0.011 -11.481 36.729 hybrid contribution 1.247 -0.010 0.357 1.297 sum -33.642 0.000 -11.124 35.433 Atomic orbital electron populations 1.20837 0.89894 1.03483 1.02919 1.20268 0.97315 0.93239 0.99166 1.21297 0.94353 0.98332 1.00953 1.21279 0.94561 0.98071 0.99891 1.19745 0.95046 0.93494 1.01287 1.20658 0.91138 1.04402 0.95760 1.21321 0.78718 1.01484 0.97245 1.44662 1.05742 1.81904 1.04727 1.17412 0.89248 0.91089 0.87507 1.20741 1.00317 1.14421 0.90597 1.20958 0.92306 0.93002 0.98828 1.21225 0.96351 1.15954 0.96659 1.19158 0.82157 0.93263 0.94906 1.86053 1.17348 1.87989 1.34175 1.22846 0.93405 1.00486 0.82096 1.18968 0.88843 0.95959 0.97115 1.21409 0.92307 1.52183 0.92591 0.91130 1.26039 0.98181 0.94089 1.01293 1.70128 1.06407 1.50635 1.29862 0.85278 0.77638 0.78679 0.78425 1.19516 1.20595 1.18330 1.19789 0.92715 1.18700 0.96329 1.21280 0.94561 0.98068 0.99892 1.21298 0.94354 0.98331 1.00952 0.90546 0.90900 0.90903 0.84808 0.85093 0.89646 0.89646 0.92132 0.92117 0.75850 0.84097 0.83345 0.85994 0.92280 0.92253 0.98362 0.98341 0.92454 0.85779 0.85094 0.84807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 71.24 0.71 -0.14 16 2 C -0.10 -1.19 5.88 -19.87 -0.12 -1.31 16 3 C -0.13 -1.60 9.70 22.27 0.22 -1.39 16 4 C -0.12 -1.52 9.70 22.27 0.22 -1.30 16 5 C -0.10 -1.21 5.13 -19.87 -0.10 -1.31 16 6 C -0.08 -0.89 5.46 29.85 0.16 -0.73 16 7 C 0.14 1.91 4.89 86.38 0.42 2.33 16 8 N -0.74 -13.63 5.73 -339.46 -1.95 -15.58 16 9 C 0.25 6.48 6.65 38.20 0.25 6.74 16 10 C -0.24 -5.73 9.31 22.42 0.21 -5.52 16 11 C -0.03 -0.84 10.03 22.24 0.22 -0.62 16 12 C -0.28 -9.29 9.04 22.39 0.20 -9.08 16 13 C 0.15 5.70 6.68 22.49 0.15 5.85 16 14 O -0.34 -15.32 10.13 -92.39 -0.94 -16.26 16 15 C 0.09 3.95 4.68 71.98 0.34 4.29 16 16 C 0.03 1.59 5.34 29.85 0.16 1.75 16 17 C -0.55 -31.52 9.11 25.60 0.23 -31.29 16 18 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16 19 C 0.00 0.14 5.46 84.65 0.46 0.61 16 20 N -0.93 -57.35 13.29 21.45 0.28 -57.07 16 21 Si 0.98 44.00 29.54 68.60 2.03 46.03 16 22 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 24 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 25 C -0.25 -8.09 9.83 22.49 0.22 -7.87 16 26 C -0.12 -1.52 9.70 22.27 0.22 -1.30 16 27 C -0.13 -1.60 9.70 22.27 0.22 -1.39 16 28 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.07 0.44 8.09 -2.38 -0.02 0.42 16 30 H 0.07 0.44 8.09 -2.39 -0.02 0.42 16 31 H 0.13 1.17 8.06 -2.91 -0.02 1.15 16 32 H 0.13 1.33 8.06 -2.91 -0.02 1.31 16 33 H 0.08 0.84 8.09 -2.39 -0.02 0.82 16 34 H 0.08 0.84 8.08 -2.38 -0.02 0.82 16 35 H 0.06 0.88 7.95 -2.38 -0.02 0.86 16 36 H 0.06 0.88 7.95 -2.38 -0.02 0.86 16 37 H 0.41 6.42 8.48 -92.71 -0.79 5.63 16 38 H 0.14 2.65 6.73 -2.91 -0.02 2.63 16 39 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 40 H 0.12 4.02 6.29 -2.91 -0.02 4.00 16 41 H 0.06 2.57 7.67 -2.39 -0.02 2.55 16 42 H 0.06 2.58 7.65 -2.39 -0.02 2.56 16 43 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 44 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 45 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 46 H 0.12 3.84 8.06 -2.91 -0.02 3.81 16 47 H 0.13 1.33 8.06 -2.91 -0.02 1.31 16 48 H 0.13 1.17 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -69.84 400.21 3.98 -65.87 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.15 Total: 18.71 kcal Atomic # 6 Polarization: -46.09 SS G_CDS: 4.40 Total: -41.70 kcal Atomic # 7 Polarization: -70.99 SS G_CDS: -1.66 Total: -72.65 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.94 Total: -16.26 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -69.84 3.98 -65.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000486127708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.926 kcal (2) G-P(sol) polarization free energy of solvation -69.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds