Wall clock time and date at job start Tue Mar 31 2020 14:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46753 * 2 1 4 4 O 1.42890 * 109.47372 * 120.00200 * 2 1 3 5 5 C 1.35888 * 117.00163 * 155.11215 * 4 2 1 6 6 C 1.39848 * 119.56612 * 5.32169 * 5 4 2 7 7 C 1.35989 * 120.93088 * 180.24004 * 6 5 4 8 8 C 1.40584 * 119.73097 * 359.49658 * 7 6 5 9 9 C 1.40532 * 121.22364 * 180.27917 * 8 7 6 10 10 C 1.36096 * 119.67262 * 179.97438 * 9 8 7 11 11 C 1.39378 * 120.99813 * 0.02562 * 10 9 8 12 12 C 1.36094 * 120.97753 * 359.97438 * 11 10 9 13 13 C 1.40574 * 119.65557 * 0.02562 * 12 11 10 14 14 C 1.36572 * 119.56912 * 185.05996 * 5 4 2 15 15 C 1.50703 * 120.18853 * 359.97438 * 14 5 4 16 16 N 1.46497 * 109.47112 * 270.02463 * 15 14 5 17 17 C 1.36942 * 120.00336 * 89.99829 * 16 15 14 18 18 H 1.07991 * 120.00037 * 222.73035 * 17 16 15 19 19 C 1.38809 * 119.99552 * 42.72535 * 17 16 15 20 20 N 1.31627 * 120.00173 * 6.52476 * 19 17 16 21 21 Si 1.86801 * 120.00002 * 186.51820 * 19 17 16 22 22 H 1.48504 * 109.46914 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47012 * 120.00203 * 21 19 17 24 24 H 1.48498 * 109.46979 * 240.00524 * 21 19 17 25 25 C 1.46502 * 119.99881 * 270.00286 * 16 15 14 26 26 C 1.52998 * 117.49959 * 193.23879 * 25 16 15 27 27 C 1.52993 * 60.00189 * 252.50990 * 26 25 16 28 28 H 1.08995 * 109.47589 * 299.99592 * 1 2 3 29 29 H 1.09001 * 109.47493 * 60.00196 * 1 2 3 30 30 H 1.09010 * 109.47178 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46935 * 240.00644 * 2 1 3 32 32 H 1.08999 * 109.46701 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47465 * 300.00223 * 3 2 1 34 34 H 1.09000 * 109.46874 * 60.00607 * 3 2 1 35 35 H 1.08004 * 119.53546 * 0.02562 * 6 5 4 36 36 H 1.08007 * 120.13248 * 179.76678 * 7 6 5 37 37 H 1.07996 * 120.15885 * 0.02562 * 9 8 7 38 38 H 1.08000 * 119.50485 * 179.97438 * 10 9 8 39 39 H 1.07999 * 119.51184 * 179.97438 * 11 10 9 40 40 H 1.07996 * 120.17136 * 180.02562 * 12 11 10 41 41 H 1.08997 * 109.47237 * 30.02166 * 15 14 5 42 42 H 1.09001 * 109.46871 * 150.02597 * 15 14 5 43 43 H 0.96994 * 119.99938 * 174.99163 * 20 19 17 44 44 H 1.09000 * 115.54892 * 338.94496 * 25 16 15 45 45 H 1.09004 * 117.49794 * 359.97438 * 26 25 16 46 46 H 1.08996 * 117.50422 * 145.01583 * 26 25 16 47 47 H 1.09004 * 117.49529 * 252.51170 * 27 26 25 48 48 H 1.08996 * 117.52219 * 107.48136 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 3.2475 -1.2226 1.0985 6 6 4.0330 -1.0134 -0.0394 7 6 5.2770 -1.5537 -0.1390 8 6 5.7887 -2.3255 0.9188 9 6 7.0723 -2.8936 0.8516 10 6 7.5364 -3.6349 1.8943 11 6 6.7572 -3.8411 3.0314 12 6 5.5097 -3.3066 3.1321 13 6 4.9962 -2.5351 2.0751 14 6 3.7135 -1.9670 2.1444 15 6 2.8565 -2.1773 3.3661 16 7 3.1137 -1.1073 4.3330 17 6 2.3733 0.0440 4.2934 18 1 2.8572 1.0017 4.4153 19 6 1.0007 -0.0200 4.0964 20 7 0.3925 -1.1872 4.0761 21 14 0.0168 1.5501 3.8602 22 1 0.9289 2.7203 3.9242 23 1 -0.6552 1.5188 2.5363 24 1 -1.0054 1.6596 4.9318 25 6 4.1631 -1.2688 5.3425 26 6 4.1839 -0.2747 6.5053 27 6 5.2495 -0.1937 5.4105 28 1 -0.3634 0.5137 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5137 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.6449 -0.4172 -0.8521 36 1 5.8712 -1.3870 -1.0254 37 1 7.6876 -2.7421 -0.0229 38 1 8.5231 -4.0706 1.8396 39 1 7.1493 -4.4337 3.8447 40 1 4.9173 -3.4743 4.0194 41 1 1.8051 -2.1628 3.0793 42 1 3.0969 -3.1401 3.8171 43 1 -0.5744 -1.2291 4.0114 44 1 4.4583 -2.2967 5.5533 45 1 3.4170 0.4998 6.5190 46 1 4.4927 -0.6484 7.4815 47 1 6.2594 -0.5141 5.6664 48 1 5.1838 0.6337 4.7039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072583021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:12 Heat of formation + Delta-G solvation = 56.684982 kcal Electronic energy + Delta-G solvation = -29336.563441 eV Core-core repulsion = 25744.331677 eV Total energy + Delta-G solvation = -3592.231764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.22330 -38.47736 -36.92411 -35.27538 -33.79950 -32.67317 -32.06498 -30.17833 -29.34342 -28.28702 -26.93129 -25.51866 -23.62739 -22.81914 -22.53589 -21.27131 -20.94229 -20.24158 -19.48652 -17.75412 -16.78212 -16.36682 -16.07068 -15.40398 -15.08135 -14.71442 -14.30450 -14.01516 -13.91230 -13.85410 -13.39241 -13.29566 -12.80058 -12.73681 -12.50425 -12.49063 -12.05461 -12.00621 -11.83318 -11.74865 -11.33233 -11.03839 -10.90710 -10.89005 -10.80190 -10.69301 -10.51490 -10.35865 -10.04939 -9.90310 -9.87237 -9.80231 -9.44760 -9.26631 -9.01032 -8.35569 -7.86151 -6.90465 -6.30268 -5.69373 -3.35304 1.06639 1.59751 2.61062 3.32655 3.41134 3.44689 3.52916 3.93705 4.47952 4.66833 5.03830 5.07785 5.13212 5.25004 5.29247 5.31037 5.40653 5.43550 5.46567 5.53032 5.61330 5.68326 5.80476 5.82250 5.90839 5.96876 6.00755 6.07742 6.14018 6.18591 6.30379 6.31907 6.38235 6.45659 6.52994 6.56203 6.57159 6.66139 6.67499 6.73459 6.83483 6.94332 7.01116 7.06838 7.17970 7.25151 7.43078 7.51236 7.81576 7.98117 8.27907 8.67766 9.27608 9.86641 10.43881 11.29702 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.011235 B = 0.006675 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.520888 B = 4193.515316 C = 5927.740098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.076 3.924 3 C -0.177 4.177 4 O -0.263 6.263 5 C 0.136 3.864 6 C -0.184 4.184 7 C -0.100 4.100 8 C -0.084 4.084 9 C -0.105 4.105 10 C -0.136 4.136 11 C -0.128 4.128 12 C -0.094 4.094 13 C -0.009 4.009 14 C -0.106 4.106 15 C 0.179 3.821 16 N -0.537 5.537 17 C -0.246 4.246 18 H 0.053 0.947 19 C 0.041 3.959 20 N -0.884 5.884 21 Si 0.887 3.113 22 H -0.279 1.279 23 H -0.279 1.279 24 H -0.292 1.292 25 C 0.132 3.868 26 C -0.196 4.196 27 C -0.226 4.226 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.122 0.878 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.030 0.970 43 H 0.254 0.746 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.037 -2.191 -8.032 10.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.019 3.981 3 C -0.234 4.234 4 O -0.175 6.175 5 C 0.089 3.911 6 C -0.203 4.203 7 C -0.118 4.118 8 C -0.084 4.084 9 C -0.123 4.123 10 C -0.154 4.154 11 C -0.146 4.146 12 C -0.112 4.112 13 C -0.010 4.010 14 C -0.110 4.110 15 C 0.054 3.946 16 N -0.251 5.251 17 C -0.376 4.376 18 H 0.070 0.930 19 C -0.160 4.160 20 N -0.526 5.526 21 Si 0.717 3.283 22 H -0.205 1.205 23 H -0.206 1.206 24 H -0.219 1.219 25 C 0.023 3.977 26 C -0.235 4.235 27 C -0.267 4.267 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.048 0.952 43 H 0.065 0.935 44 H 0.103 0.897 45 H 0.116 0.884 46 H 0.090 0.910 47 H 0.088 0.912 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.637 -2.238 -7.946 10.592 hybrid contribution -0.178 1.211 -0.408 1.290 sum 6.459 -1.027 -8.354 10.609 Atomic orbital electron populations 1.21894 0.93191 1.03000 1.02703 1.22262 0.95269 0.92434 0.88100 1.22364 1.01796 0.96809 1.02468 1.86555 1.28196 1.67094 1.35639 1.18437 0.85259 0.94050 0.93337 1.21095 0.96246 1.04230 0.98708 1.20595 0.95428 0.98087 0.97732 1.17991 0.94842 1.00634 0.94972 1.20833 0.94779 0.98117 0.98543 1.20632 0.99617 1.00684 0.94453 1.20708 0.94945 1.01047 0.97932 1.21125 0.95673 0.96274 0.98088 1.17800 0.93126 0.96725 0.93312 1.20372 0.95149 0.98199 0.97246 1.20144 1.01202 0.88802 0.84416 1.43251 1.36440 1.17402 1.28050 1.18808 0.87879 0.85141 1.45724 0.92980 1.25132 0.96578 0.95664 0.98598 1.69624 1.08138 1.22451 1.52390 0.86537 0.80319 0.83885 0.77527 1.20453 1.20627 1.21940 1.21109 0.92395 0.91791 0.92404 1.23060 1.02166 1.05633 0.92643 1.23302 0.93980 1.06021 1.03357 0.90823 0.91735 0.91842 0.92138 0.92122 0.92083 0.91359 0.86069 0.86463 0.86704 0.87046 0.86818 0.85468 0.85490 0.95205 0.93512 0.89731 0.88386 0.90975 0.91205 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.56 37.15 0.36 -2.05 16 2 C 0.08 1.28 2.84 -26.73 -0.08 1.20 16 3 C -0.18 -2.77 9.16 37.16 0.34 -2.43 16 4 O -0.26 -5.53 8.47 -19.39 -0.16 -5.69 16 5 C 0.14 2.77 6.53 -39.58 -0.26 2.51 16 6 C -0.18 -3.16 8.13 -39.79 -0.32 -3.48 16 7 C -0.10 -1.60 9.76 -39.50 -0.39 -1.99 16 8 C -0.08 -1.46 5.74 -106.81 -0.61 -2.07 16 9 C -0.10 -1.54 9.77 -39.49 -0.39 -1.92 16 10 C -0.14 -1.89 9.95 -39.93 -0.40 -2.29 16 11 C -0.13 -1.91 9.95 -39.93 -0.40 -2.31 16 12 C -0.09 -1.64 8.92 -39.47 -0.35 -1.99 16 13 C -0.01 -0.17 5.74 -106.84 -0.61 -0.79 16 14 C -0.11 -2.25 5.48 -104.39 -0.57 -2.83 16 15 C 0.18 4.19 4.75 -5.19 -0.02 4.16 16 16 N -0.54 -13.01 2.76 -167.03 -0.46 -13.47 16 17 C -0.25 -6.47 7.95 -15.06 -0.12 -6.59 16 18 H 0.05 1.44 7.42 -52.49 -0.39 1.05 16 19 C 0.04 1.07 4.98 -17.43 -0.09 0.98 16 20 N -0.88 -23.92 10.97 55.49 0.61 -23.32 16 21 Si 0.89 20.98 29.47 -169.99 -5.01 15.97 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.33 5.46 56.52 0.31 -6.02 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 C 0.13 2.86 5.96 -67.93 -0.40 2.45 16 26 C -0.20 -4.02 9.83 -26.74 -0.26 -4.28 16 27 C -0.23 -4.56 10.14 -26.73 -0.27 -4.83 16 28 H 0.07 1.38 6.38 -51.93 -0.33 1.05 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16 31 H 0.06 0.89 6.27 -51.93 -0.33 0.56 16 32 H 0.06 0.95 6.89 -51.93 -0.36 0.59 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.12 1.78 5.34 -52.48 -0.28 1.50 16 36 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 37 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.13 2.24 4.66 -52.49 -0.24 2.00 16 41 H 0.13 3.34 4.65 -51.93 -0.24 3.10 16 42 H 0.03 0.67 6.32 -51.93 -0.33 0.34 16 43 H 0.25 6.72 8.32 -40.82 -0.34 6.38 16 44 H 0.09 1.69 6.74 -51.93 -0.35 1.34 16 45 H 0.10 2.21 7.02 -51.93 -0.36 1.84 16 46 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 47 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 48 H 0.08 1.80 8.04 -51.93 -0.42 1.38 16 LS Contribution 375.60 15.07 5.66 5.66 Total: -1.00 -28.22 375.60 -11.30 -39.52 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -7.09 Total: 9.84 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: -4.85 Total: -28.52 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.15 Total: -36.79 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.16 Total: -5.69 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.01 Total: 15.97 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.22 -11.30 -39.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072583021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.209 kcal (2) G-P(sol) polarization free energy of solvation -28.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds