Wall clock time and date at job start Tue Mar 31 2020 14:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47477 * 2 1 4 4 H 1.09006 * 109.47132 * 57.25635 * 3 2 1 5 5 C 1.52992 * 109.47417 * 177.26141 * 3 2 1 6 6 C 1.50698 * 109.47125 * 184.99615 * 5 3 2 7 7 C 1.38232 * 120.00331 * 269.72870 * 6 5 3 8 8 C 1.38234 * 119.99996 * 179.76714 * 7 6 5 9 9 C 1.38238 * 120.00288 * 0.50705 * 8 7 6 10 10 C 1.38238 * 119.99538 * 359.74525 * 9 8 7 11 11 C 1.38237 * 119.99691 * 90.00163 * 6 5 3 12 12 N 1.46905 * 109.46694 * 297.26431 * 3 2 1 13 13 C 1.46899 * 110.99837 * 301.23911 * 12 3 2 14 14 C 1.50696 * 109.47148 * 178.52016 * 13 12 3 15 15 C 1.38329 * 119.96095 * 269.97826 * 14 13 12 16 16 C 1.38281 * 120.13666 * 180.02562 * 15 14 13 17 17 C 1.38129 * 120.06683 * 359.67131 * 16 15 14 18 18 C 1.38847 * 119.92985 * 0.60124 * 17 16 15 19 19 O 1.35758 * 120.06826 * 179.70024 * 18 17 16 20 20 C 1.34827 * 116.99732 * 354.28297 * 19 18 17 21 21 H 1.08002 * 120.00109 * 5.00234 * 20 19 18 22 22 C 1.38652 * 119.99647 * 184.99356 * 20 19 18 23 23 N 1.31551 * 120.00369 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99898 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47306 * 59.99942 * 24 22 20 26 26 H 1.48500 * 109.47416 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.46950 * 300.00315 * 24 22 20 28 28 C 1.38077 * 119.96992 * 89.99466 * 14 13 12 29 29 H 1.08995 * 109.47393 * 185.07551 * 1 2 3 30 30 H 1.09008 * 109.47010 * 305.06925 * 1 2 3 31 31 H 1.09003 * 109.47143 * 65.06823 * 1 2 3 32 32 H 1.08993 * 109.47187 * 239.99760 * 2 1 3 33 33 H 1.09005 * 109.46944 * 119.99968 * 2 1 3 34 34 H 1.08996 * 109.47129 * 305.00055 * 5 3 2 35 35 H 1.09004 * 109.46918 * 64.99704 * 5 3 2 36 36 H 1.08001 * 119.99595 * 359.97438 * 7 6 5 37 37 H 1.07999 * 119.99902 * 180.22901 * 8 7 6 38 38 H 1.07994 * 119.99794 * 179.72513 * 9 8 7 39 39 H 1.07993 * 119.99849 * 179.97438 * 10 9 8 40 40 H 1.08000 * 120.00127 * 0.02562 * 11 6 5 41 41 H 1.00898 * 110.99628 * 177.28781 * 12 3 2 42 42 H 1.09001 * 109.47455 * 58.51396 * 13 12 3 43 43 H 1.08998 * 109.46948 * 298.51612 * 13 12 3 44 44 H 1.07993 * 119.93053 * 0.02562 * 15 14 13 45 45 H 1.08004 * 119.96548 * 179.97438 * 16 15 14 46 46 H 1.08001 * 120.03283 * 180.32426 * 17 16 15 47 47 H 0.97004 * 120.00646 * 179.97438 * 23 22 20 48 48 H 1.08002 * 120.03306 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6371 1.9704 0.8644 5 6 3.5684 1.4430 0.0689 6 6 4.0652 2.8604 0.1926 7 6 4.3522 3.5939 -0.9434 8 6 4.8033 4.8956 -0.8300 9 6 4.9774 5.4604 0.4197 10 6 4.6954 4.7252 1.5558 11 6 4.2393 3.4251 1.4423 12 7 1.6051 2.1156 -1.2312 13 6 2.1060 1.4133 -2.4202 14 6 1.6106 2.1102 -3.6611 15 6 0.4075 1.7342 -4.2309 16 6 -0.0503 2.3709 -5.3699 17 6 0.6898 3.3893 -5.9383 18 6 1.9006 3.7650 -5.3720 19 8 2.6332 4.7615 -5.9318 20 6 2.1893 5.2647 -7.1013 21 1 1.2468 4.9311 -7.5096 22 6 2.9429 6.2105 -7.7795 23 7 4.0911 6.6166 -7.2823 24 14 2.3276 6.9082 -9.3994 25 1 1.0197 7.5781 -9.1850 26 1 3.3097 7.8936 -9.9189 27 1 2.1645 5.8072 -10.3825 28 6 2.3582 3.1230 -4.2284 29 1 -0.3634 -1.0236 0.0909 30 1 -0.3633 0.5905 0.8412 31 1 -0.3633 0.4332 -0.9319 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8933 0.8672 0.9355 35 1 3.9732 0.9940 -0.8381 36 1 4.2207 3.1510 -1.9196 37 1 5.0239 5.4699 -1.7176 38 1 5.3341 6.4759 0.5082 39 1 4.8318 5.1662 2.5321 40 1 4.0197 2.8505 2.3299 41 1 1.8919 3.0829 -1.2350 42 1 1.7461 0.3844 -2.4131 43 1 3.1959 1.4170 -2.4121 44 1 -0.1755 0.9418 -3.7853 45 1 -0.9898 2.0748 -5.8127 46 1 0.3293 3.8897 -6.8249 47 1 4.6185 7.2780 -7.7569 48 1 3.2978 3.4156 -3.7834 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089630121.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:07 Heat of formation + Delta-G solvation = 10.549244 kcal Electronic energy + Delta-G solvation = -27188.583077 eV Core-core repulsion = 23594.350718 eV Total energy + Delta-G solvation = -3594.232359 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.82422 -38.96729 -37.70811 -36.31276 -32.71220 -32.38481 -32.21106 -30.82965 -30.05721 -28.98742 -27.75629 -25.56483 -24.82736 -23.84686 -22.57533 -21.59200 -21.17205 -20.86920 -19.57158 -17.75988 -17.16551 -16.70594 -16.02197 -15.46177 -15.21813 -15.02501 -14.67752 -14.43270 -14.34243 -14.16556 -13.82679 -13.53131 -13.38361 -13.21098 -13.16513 -12.86300 -12.57503 -12.34482 -12.19286 -12.06123 -11.66695 -11.55757 -11.51398 -11.25697 -11.09978 -10.90715 -10.83891 -10.72776 -10.64520 -10.51490 -10.46521 -10.36954 -9.32068 -8.90204 -8.81542 -8.78648 -8.25841 -7.98571 -7.19432 -6.42733 -4.01863 1.35807 1.42678 2.14695 2.42904 3.14262 3.15258 3.17795 3.79071 3.98249 4.30176 4.57187 4.68655 4.82363 4.91118 5.04638 5.08375 5.10761 5.14390 5.16953 5.26519 5.27830 5.34786 5.46988 5.54172 5.60380 5.64214 5.66859 5.76175 5.77751 5.92818 5.93410 5.98579 6.00668 6.07911 6.09142 6.22241 6.24035 6.35423 6.40269 6.48868 6.59635 6.63579 6.69788 6.94147 7.03735 7.09703 7.16477 7.31601 7.42348 7.46212 7.55311 7.86178 8.02255 9.03282 9.73768 10.75375 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.011374 B = 0.003547 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.128621 B = 7891.706672 C =10072.990628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C 0.093 3.907 4 H 0.082 0.918 5 C -0.121 4.121 6 C -0.083 4.083 7 C -0.118 4.118 8 C -0.108 4.108 9 C -0.125 4.125 10 C -0.121 4.121 11 C -0.121 4.121 12 N -0.671 5.671 13 C 0.097 3.903 14 C -0.044 4.044 15 C -0.189 4.189 16 C -0.077 4.077 17 C -0.232 4.232 18 C 0.153 3.847 19 O -0.180 6.180 20 C -0.392 4.392 21 H 0.090 0.910 22 C 0.040 3.960 23 N -0.865 5.865 24 Si 0.939 3.061 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.185 4.185 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.347 0.653 42 H 0.079 0.921 43 H 0.036 0.964 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.125 0.875 47 H 0.269 0.731 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.648 -9.404 15.780 18.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C -0.017 4.017 4 H 0.100 0.900 5 C -0.160 4.160 6 C -0.084 4.084 7 C -0.136 4.136 8 C -0.126 4.126 9 C -0.143 4.143 10 C -0.139 4.139 11 C -0.139 4.139 12 N -0.302 5.302 13 C -0.031 4.031 14 C -0.045 4.045 15 C -0.208 4.208 16 C -0.096 4.096 17 C -0.251 4.251 18 C 0.100 3.900 19 O -0.084 6.084 20 C -0.468 4.468 21 H 0.108 0.892 22 C -0.164 4.164 23 N -0.500 5.500 24 Si 0.764 3.236 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.195 1.195 28 C -0.205 4.205 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.166 0.834 42 H 0.097 0.903 43 H 0.054 0.946 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.142 0.858 47 H 0.079 0.921 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.868 -9.429 15.776 18.473 hybrid contribution 0.648 0.751 -0.899 1.339 sum -1.220 -8.677 14.877 17.265 Atomic orbital electron populations 1.21635 0.95011 1.00369 1.02937 1.21618 0.97028 0.95252 1.01642 1.21658 0.90751 0.95550 0.93750 0.90033 1.21430 0.98187 0.93130 1.03244 1.19837 0.99247 0.96022 0.93249 1.21234 0.99319 0.94753 0.98317 1.21306 0.98054 0.95332 0.97907 1.21172 1.00594 0.99906 0.92666 1.21103 0.99810 0.94596 0.98392 1.20961 1.00716 0.95524 0.96714 1.60688 1.62757 1.06460 1.00287 1.20934 0.96750 0.97763 0.87661 1.19181 0.94698 0.95706 0.94894 1.20401 0.97547 1.04069 0.98814 1.20745 0.98199 0.95276 0.95333 1.21177 0.97216 1.02536 1.04213 1.19302 0.90391 0.87997 0.92325 1.83972 1.46802 1.42344 1.35258 1.21257 1.06183 1.22812 0.96554 0.89229 1.25246 0.95328 0.96541 0.99291 1.70020 1.11808 1.29509 1.38640 0.85816 0.78543 0.78877 0.80404 1.19526 1.20309 1.19544 1.20011 1.01793 1.00277 0.98455 0.93761 0.93184 0.91287 0.91722 0.92155 0.90759 0.90526 0.85898 0.85506 0.86237 0.86415 0.86480 0.83357 0.90252 0.94576 0.87700 0.87597 0.85751 0.92068 0.87144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.71 37.16 0.36 -1.02 16 2 C -0.12 -1.09 5.11 -26.73 -0.14 -1.23 16 3 C 0.09 0.97 2.56 -67.71 -0.17 0.79 16 4 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 5 C -0.12 -1.22 4.64 -27.89 -0.13 -1.35 16 6 C -0.08 -0.98 4.72 -104.63 -0.49 -1.47 16 7 C -0.12 -1.59 8.37 -39.58 -0.33 -1.92 16 8 C -0.11 -1.47 10.05 -39.58 -0.40 -1.87 16 9 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 10 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 11 C -0.12 -1.31 9.70 -39.58 -0.38 -1.70 16 12 N -0.67 -8.62 5.78 -107.99 -0.62 -9.24 16 13 C 0.10 1.33 4.87 -4.98 -0.02 1.31 16 14 C -0.04 -0.77 5.40 -104.65 -0.57 -1.34 16 15 C -0.19 -3.29 9.70 -39.53 -0.38 -3.68 16 16 C -0.08 -1.44 10.04 -39.61 -0.40 -1.84 16 17 C -0.23 -5.09 9.17 -39.40 -0.36 -5.45 16 18 C 0.15 3.69 6.65 -39.11 -0.26 3.43 16 19 O -0.18 -5.12 9.76 0.03 0.00 -5.12 16 20 C -0.39 -10.97 9.49 30.89 0.29 -10.68 16 21 H 0.09 2.33 5.21 -52.49 -0.27 2.06 16 22 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 23 N -0.86 -25.28 13.67 55.48 0.76 -24.52 16 24 Si 0.94 20.59 29.55 -169.99 -5.02 15.57 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 26 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 27 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 28 C -0.19 -3.84 9.65 -39.39 -0.38 -4.22 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.07 0.79 7.84 -51.93 -0.41 0.38 16 32 H 0.06 0.62 6.20 -51.93 -0.32 0.30 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 35 H 0.08 0.82 6.15 -51.93 -0.32 0.50 16 36 H 0.12 1.74 5.56 -52.49 -0.29 1.45 16 37 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 40 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 41 H 0.35 4.97 7.01 -39.29 -0.28 4.69 16 42 H 0.08 1.01 6.08 -51.93 -0.32 0.69 16 43 H 0.04 0.49 5.08 -51.93 -0.26 0.23 16 44 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 45 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 46 H 0.12 2.74 5.64 -52.49 -0.30 2.44 16 47 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 48 H 0.11 2.22 6.91 -52.49 -0.36 1.86 16 LS Contribution 384.49 15.07 5.79 5.79 Total: -1.00 -29.94 384.49 -10.66 -40.60 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -6.91 Total: 11.74 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: -4.66 Total: -34.82 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 0.13 Total: -33.77 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: 0.00 Total: -5.12 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.94 -10.66 -40.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089630121.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.154 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds