Wall clock time and date at job start Tue Mar 31 2020 14:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00020 * 2 1 4 4 C 1.53006 * 109.46998 * 89.99804 * 3 2 1 5 5 C 1.50699 * 109.46866 * 180.02562 * 4 3 2 6 6 N 1.29945 * 126.28943 * 90.02241 * 5 4 3 7 7 O 1.21301 * 110.25300 * 179.97438 * 6 5 4 8 8 C 1.33641 * 109.81235 * 0.02562 * 7 6 5 9 9 C 1.50699 * 126.55289 * 179.97438 * 8 7 6 10 10 C 1.52994 * 109.47252 * 269.97939 * 9 8 7 11 11 C 1.50699 * 109.47252 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00024 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00357 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99964 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00190 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.46935 * 89.99842 * 15 13 11 17 17 H 1.48502 * 109.46937 * 209.99962 * 15 13 11 18 18 H 1.48501 * 109.46864 * 330.00145 * 15 13 11 19 19 N 1.31132 * 106.89893 * 359.76747 * 8 7 6 20 20 C 1.34777 * 119.99857 * 179.97438 * 2 1 3 21 21 O 1.21516 * 120.00055 * 180.02562 * 20 2 1 22 22 O 1.34635 * 120.00302 * 0.02562 * 20 2 1 23 23 C 1.45197 * 117.00314 * 179.97438 * 22 20 2 24 24 C 1.53000 * 109.47122 * 60.00057 * 23 22 20 25 25 C 1.52997 * 109.47192 * 179.97438 * 23 22 20 26 26 C 1.53003 * 109.47011 * 300.00186 * 23 22 20 27 27 H 1.09001 * 109.47412 * 89.99916 * 1 2 3 28 28 H 1.09000 * 109.47567 * 210.00198 * 1 2 3 29 29 H 1.09002 * 109.47279 * 329.99646 * 1 2 3 30 30 H 1.09000 * 109.47175 * 329.99936 * 3 2 1 31 31 H 1.09001 * 109.47297 * 209.99443 * 3 2 1 32 32 H 1.08993 * 109.46955 * 300.00226 * 4 3 2 33 33 H 1.09000 * 109.47050 * 60.00054 * 4 3 2 34 34 H 1.08994 * 109.46823 * 29.98007 * 9 8 7 35 35 H 1.09001 * 109.47261 * 149.97419 * 9 8 7 36 36 H 1.08999 * 109.47264 * 299.99319 * 10 9 8 37 37 H 1.09001 * 109.47412 * 59.99573 * 10 9 8 38 38 H 0.96996 * 120.00208 * 180.02562 * 14 13 11 39 39 H 1.08994 * 109.47623 * 59.99892 * 24 23 22 40 40 H 1.09001 * 109.47212 * 180.02562 * 24 23 22 41 41 H 1.09007 * 109.47270 * 299.99906 * 24 23 22 42 42 H 1.09004 * 109.47165 * 60.00249 * 25 23 22 43 43 H 1.09005 * 109.47056 * 179.97438 * 25 23 22 44 44 H 1.08993 * 109.47569 * 299.99752 * 25 23 22 45 45 H 1.08997 * 109.46901 * 59.99822 * 26 23 22 46 46 H 1.08996 * 109.47006 * 180.02562 * 26 23 22 47 47 H 1.08996 * 109.46952 * 299.99815 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7104 1.4426 5 6 3.2054 3.0158 1.4425 6 7 2.6823 4.2054 1.4430 7 8 3.5551 5.0478 1.4434 8 6 4.7542 4.4578 1.4425 9 6 6.0940 5.1477 1.4420 10 6 6.5468 5.3812 -0.0006 11 6 7.8863 6.0717 -0.0011 12 1 8.3664 6.3197 0.9340 13 6 8.4990 6.3870 -1.1953 14 7 7.9142 6.0856 -2.3341 15 14 10.1597 7.2423 -1.1959 16 1 11.2408 6.2243 -1.1958 17 1 10.2790 8.0909 -2.4087 18 1 10.2795 8.0916 0.0164 19 7 4.5422 3.1637 1.4467 20 6 2.1388 -1.1672 0.0005 21 8 3.3540 -1.1673 0.0010 22 8 1.4657 -2.3332 0.0005 23 6 2.2564 -3.5510 0.0005 24 6 3.1391 -3.5859 1.2498 25 6 1.3244 -4.7643 0.0012 26 6 3.1391 -3.5858 -1.2487 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 1.6084 2.0284 -0.5138 31 1 3.1499 1.1384 -0.5137 32 1 1.5000 1.8407 1.9563 33 1 3.0415 0.9508 1.9564 34 1 6.0097 6.1052 1.9559 35 1 6.8246 4.5229 1.9556 36 1 6.6312 4.4237 -0.5145 37 1 5.8161 6.0061 -0.5142 38 1 8.3454 6.3071 -3.1742 39 1 2.5103 -3.5610 2.1398 40 1 3.7330 -4.4998 1.2496 41 1 3.8031 -2.7214 1.2498 42 1 0.6953 -4.7397 -0.8886 43 1 1.9181 -5.6785 0.0007 44 1 0.6960 -4.7393 0.8913 45 1 3.8031 -2.7214 -1.2487 46 1 3.7324 -4.5002 -1.2490 47 1 2.5103 -3.5610 -2.1387 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495890539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:32 Heat of formation + Delta-G solvation = -26.780056 kcal Electronic energy + Delta-G solvation = -27540.400919 eV Core-core repulsion = 23533.700576 eV Total energy + Delta-G solvation = -4006.700342 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.13934 -41.01372 -38.15153 -36.16414 -35.52780 -34.66578 -34.11342 -32.73522 -31.17773 -29.90909 -27.70049 -27.59996 -27.09867 -25.83769 -25.18012 -23.16853 -22.08533 -21.51594 -20.29328 -19.56850 -18.08971 -17.68363 -17.10295 -16.88416 -16.45542 -16.36741 -15.62948 -14.87905 -14.84441 -14.56168 -14.37778 -14.02696 -13.79131 -13.66406 -13.50563 -13.01166 -12.85704 -12.76418 -12.59911 -12.43406 -12.42355 -12.14895 -12.12047 -11.97691 -11.68069 -11.56123 -11.51900 -11.26784 -11.06974 -10.98600 -10.73450 -10.58449 -10.56095 -10.16678 -10.11690 -10.03749 -9.34268 -9.23970 -8.99596 -8.44011 -6.08345 -4.12997 1.55622 1.88497 2.57011 2.70922 3.29989 3.32957 3.36917 3.39791 3.54125 4.00634 4.33963 4.41814 4.45469 4.49523 4.64311 4.77250 4.85684 4.88622 5.17569 5.19240 5.23356 5.25933 5.27503 5.28377 5.41396 5.42918 5.44225 5.50360 5.61824 5.70641 5.74670 5.80358 6.02076 6.05020 6.07920 6.12691 6.20027 6.25124 6.25404 6.42581 6.63495 7.10076 7.49918 7.57672 7.87193 8.15402 8.22649 8.57452 8.92227 9.51891 11.02966 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.014791 B = 0.002350 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.586489 B =11913.924094 C =13074.206316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.600 5.600 3 C 0.138 3.862 4 C -0.038 4.038 5 C 0.166 3.834 6 N -0.398 5.398 7 O 0.068 5.932 8 C 0.216 3.784 9 C -0.029 4.029 10 C 0.028 3.972 11 C -0.525 4.525 12 H 0.062 0.938 13 C 0.060 3.940 14 N -0.891 5.891 15 Si 0.897 3.103 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.272 1.272 19 N -0.490 5.490 20 C 0.649 3.351 21 O -0.555 6.555 22 O -0.363 6.363 23 C 0.135 3.865 24 C -0.184 4.184 25 C -0.139 4.139 26 C -0.184 4.184 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.027 0.973 37 H 0.024 0.976 38 H 0.263 0.737 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.089 0.911 46 H 0.070 0.930 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.029 -18.366 5.963 25.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.340 5.340 3 C 0.015 3.985 4 C -0.078 4.078 5 C -0.108 4.108 6 N -0.109 5.109 7 O 0.012 5.988 8 C -0.003 4.003 9 C -0.068 4.068 10 C -0.011 4.011 11 C -0.564 4.564 12 H 0.080 0.920 13 C -0.143 4.143 14 N -0.530 5.530 15 Si 0.725 3.275 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.197 1.197 19 N -0.224 5.224 20 C 0.403 3.597 21 O -0.443 6.443 22 O -0.278 6.278 23 C 0.098 3.902 24 C -0.241 4.241 25 C -0.196 4.196 26 C -0.242 4.242 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.045 0.955 37 H 0.042 0.958 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.084 0.916 45 H 0.108 0.892 46 H 0.089 0.911 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.381 -18.737 5.777 26.202 hybrid contribution 0.954 0.535 -0.152 1.104 sum -16.427 -18.202 5.625 25.156 Atomic orbital electron populations 1.21806 0.78382 1.03544 1.02332 1.46640 1.07307 1.03320 1.76736 1.21424 0.98728 0.82524 0.95820 1.20192 0.99170 0.89603 0.98878 1.25430 0.88384 0.95261 1.01724 1.74540 1.14271 0.99659 1.22392 1.85267 1.13571 1.33931 1.66038 1.29665 0.91625 0.87404 0.91644 1.20768 0.82711 0.98936 1.04400 1.19159 0.96810 0.98103 0.86981 1.21066 1.03525 1.39005 0.92768 0.92026 1.25013 0.97967 0.95762 0.95519 1.69964 1.38628 1.46964 0.97409 0.86508 0.83871 0.79512 0.77616 1.20540 1.21191 1.19704 1.71986 1.13326 1.15309 1.21765 1.18041 0.84083 0.81185 0.76356 1.90967 1.12029 1.86611 1.54669 1.86281 1.41060 1.13768 1.86704 1.22083 0.90867 0.80524 0.96682 1.22523 1.00665 1.04735 0.96221 1.21850 0.99551 0.95016 1.03231 1.22521 1.00676 1.04714 0.96245 0.92313 0.90382 0.90668 0.89271 0.88299 0.89280 0.88373 0.89072 0.88164 0.95461 0.95795 0.92748 0.92255 0.91113 0.89172 0.91538 0.90140 0.91552 0.89182 0.91106 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 10.44 59.84 0.62 1.23 16 2 N -0.60 -6.62 2.87 -187.41 -0.54 -7.16 16 3 C 0.14 1.71 5.39 -4.04 -0.02 1.68 16 4 C -0.04 -0.50 6.17 -27.88 -0.17 -0.67 16 5 C 0.17 2.80 7.47 -156.36 -1.17 1.63 16 6 N -0.40 -7.02 12.16 30.90 0.38 -6.64 16 7 O 0.07 1.27 11.31 18.11 0.20 1.47 16 8 C 0.22 4.12 7.77 -13.06 -0.10 4.02 16 9 C -0.03 -0.56 5.78 -27.89 -0.16 -0.72 16 10 C 0.03 0.68 4.95 -27.89 -0.14 0.55 16 11 C -0.53 -14.10 9.11 -34.44 -0.31 -14.41 16 12 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 15 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 N -0.49 -9.51 11.55 -9.87 -0.11 -9.62 16 20 C 0.65 8.36 7.70 54.06 0.42 8.77 16 21 O -0.55 -8.72 11.46 -19.28 -0.22 -8.94 16 22 O -0.36 -4.01 8.71 -40.31 -0.35 -4.36 16 23 C 0.14 1.27 1.13 -90.62 -0.10 1.17 16 24 C -0.18 -1.76 8.37 37.16 0.31 -1.45 16 25 C -0.14 -0.90 8.85 37.16 0.33 -0.57 16 26 C -0.18 -1.80 8.37 37.16 0.31 -1.49 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.53 7.37 -51.93 -0.38 0.14 16 29 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 30 H 0.09 0.99 8.07 -51.93 -0.42 0.57 16 31 H 0.10 1.49 7.42 -51.93 -0.39 1.10 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 35 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 36 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.09 1.12 5.88 -51.92 -0.31 0.82 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 1.15 5.88 -51.93 -0.31 0.84 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 391.91 15.07 5.91 5.91 Total: -1.00 -32.18 391.91 -6.98 -39.16 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -7.68 Total: -1.59 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -0.28 Total: 1.31 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 0.46 Total: -48.96 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -0.37 Total: -11.83 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.18 -6.98 -39.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495890539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.381 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds