Wall clock time and date at job start Tue Mar 31 2020 14:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46898 * 2 1 4 4 O 1.42890 * 109.47288 * 120.00150 * 2 1 3 5 5 C 1.35621 * 117.00059 * 83.79713 * 4 2 1 6 6 C 1.39126 * 119.88374 * 353.98784 * 5 4 2 7 7 C 1.36434 * 120.44087 * 180.27410 * 6 5 4 8 8 C 1.40922 * 120.18984 * 359.71978 * 7 6 5 9 9 C 1.41247 * 120.11479 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99635 * 31.53361 * 9 8 7 11 11 C 1.39849 * 119.99708 * 211.53971 * 9 8 7 12 12 N 1.30895 * 120.00435 * 12.17356 * 11 9 8 13 13 Si 1.86799 * 119.99647 * 192.17309 * 11 9 8 14 14 H 1.48497 * 109.47426 * 59.99820 * 13 11 9 15 15 H 1.48505 * 109.47019 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47401 * 299.99900 * 13 11 9 17 17 C 1.40608 * 119.76808 * 359.97438 * 8 7 6 18 18 C 1.38611 * 119.56698 * 359.97438 * 17 8 7 19 19 C 1.48259 * 120.10091 * 180.02562 * 18 17 8 20 20 C 1.39302 * 120.15970 * 65.27722 * 19 18 17 21 21 C 1.38016 * 119.94723 * 180.27736 * 20 19 18 22 22 C 1.38411 * 120.27849 * 359.74537 * 21 20 19 23 23 C 1.38139 * 120.33126 * 359.97438 * 22 21 20 24 24 C 1.38765 * 120.04475 * 359.97438 * 23 22 21 25 25 N 1.39493 * 120.13943 * 180.02562 * 24 23 22 26 26 C 1.46900 * 111.00175 * 60.00189 * 25 24 23 27 27 C 1.46905 * 110.99977 * 296.04823 * 25 24 23 28 28 H 1.09004 * 109.46925 * 60.00037 * 1 2 3 29 29 H 1.09001 * 109.46983 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47097 * 299.99678 * 1 2 3 31 31 H 1.08999 * 109.47097 * 240.00321 * 2 1 3 32 32 H 1.08997 * 109.46961 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47120 * 300.00347 * 3 2 1 34 34 H 1.09000 * 109.46461 * 60.00201 * 3 2 1 35 35 H 1.07994 * 119.77993 * 359.97438 * 6 5 4 36 36 H 1.07994 * 119.90526 * 179.70117 * 7 6 5 37 37 H 0.96997 * 120.00444 * 180.02562 * 12 11 9 38 38 H 1.07994 * 120.21559 * 180.02562 * 17 8 7 39 39 H 1.08004 * 120.02748 * 0.02562 * 20 19 18 40 40 H 1.08001 * 119.86169 * 179.76356 * 21 20 19 41 41 H 1.08004 * 119.83669 * 179.97438 * 22 21 20 42 42 H 1.07999 * 119.98018 * 180.02562 * 23 22 21 43 43 H 1.08993 * 109.47362 * 59.99911 * 26 25 24 44 44 H 1.09000 * 109.46731 * 300.00053 * 26 25 24 45 45 H 1.09000 * 109.47069 * 180.02562 * 26 25 24 46 46 H 1.08999 * 109.46819 * 183.95573 * 27 25 24 47 47 H 1.09004 * 109.46755 * 303.95364 * 27 25 24 48 48 H 1.09003 * 109.47296 * 63.95132 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0885 -2.0260 1.1064 6 6 1.6003 -2.7011 -0.0078 7 6 1.6721 -4.0618 -0.0779 8 6 2.2481 -4.7964 0.9778 9 6 2.3221 -6.2049 0.9033 10 1 2.4359 -6.6897 -0.0550 11 6 2.2479 -6.9716 2.0706 12 7 1.8746 -6.4166 3.1957 13 14 2.6817 -8.7880 2.0240 14 1 4.0886 -8.9497 1.5773 15 1 2.5226 -9.3698 3.3810 16 1 1.7780 -9.4886 1.0765 17 6 2.7500 -4.1221 2.1050 18 6 2.6730 -2.7395 2.1654 19 6 3.1989 -2.0164 3.3481 20 6 4.5625 -2.0379 3.6321 21 6 5.0467 -1.3680 4.7374 22 6 4.1834 -0.6694 5.5636 23 6 2.8299 -0.6357 5.2895 24 6 2.3286 -1.3035 4.1812 25 7 0.9623 -1.2703 3.9023 26 6 0.5013 0.1085 3.6914 27 6 0.1915 -1.9260 4.9672 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.1572 -2.1448 -0.8205 36 1 1.2860 -4.5774 -0.9447 37 1 1.8235 -6.9483 4.0053 38 1 3.1933 -4.6778 2.9180 39 1 5.2398 -2.5816 2.9902 40 1 6.1036 -1.3887 4.9585 41 1 4.5699 -0.1481 6.4269 42 1 2.1615 -0.0885 5.9377 43 1 1.0401 0.5473 2.8518 44 1 0.6889 0.6957 4.5904 45 1 -0.5672 0.1054 3.4762 46 1 -0.8629 -1.9483 4.6915 47 1 0.5532 -2.9453 5.1025 48 1 0.3122 -1.3711 5.8976 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592986310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:15 Heat of formation + Delta-G solvation = 14.048853 kcal Electronic energy + Delta-G solvation = -28855.173006 eV Core-core repulsion = 25261.092401 eV Total energy + Delta-G solvation = -3594.080605 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.66758 -38.60822 -36.57680 -35.89089 -33.50577 -32.34882 -31.60103 -29.47300 -28.96612 -27.90487 -27.16407 -26.93814 -24.77918 -24.04191 -22.58694 -21.93470 -20.53771 -19.94846 -19.63351 -17.35601 -16.98656 -16.33112 -15.25984 -15.21737 -14.94345 -14.63977 -14.56786 -14.39501 -13.90586 -13.56006 -13.44509 -13.23342 -12.96028 -12.61935 -12.40717 -12.28964 -12.07560 -12.01400 -11.84983 -11.69386 -11.60765 -11.47893 -11.27635 -11.22256 -11.09115 -10.99154 -10.77129 -10.74118 -10.43788 -10.33702 -9.74233 -9.71298 -9.30149 -8.96160 -8.36554 -8.13208 -7.87496 -7.30328 -6.77205 -6.54840 -4.16450 1.81163 1.85039 2.88905 2.97389 3.14580 3.17523 3.28885 4.05619 4.19997 4.26303 4.39076 4.72976 5.18602 5.30143 5.32388 5.38520 5.46019 5.50417 5.61613 5.64044 5.70145 5.74988 5.77875 5.86868 5.90503 5.94171 5.99781 6.07799 6.09755 6.18900 6.20344 6.28665 6.35316 6.39493 6.45543 6.56294 6.65754 6.84433 6.94511 7.02039 7.07894 7.22554 7.30324 7.35467 7.44357 7.52659 7.60529 7.85169 8.02485 8.08712 8.28795 8.58018 8.75329 9.02096 9.07678 10.40441 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.010745 B = 0.005331 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.174709 B = 5250.998083 C = 6550.871064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.081 3.919 3 C -0.144 4.144 4 O -0.306 6.306 5 C 0.053 3.947 6 C -0.182 4.182 7 C -0.180 4.180 8 C 0.085 3.915 9 C -0.472 4.472 10 H 0.072 0.928 11 C 0.076 3.924 12 N -0.809 5.809 13 Si 0.904 3.096 14 H -0.266 1.266 15 H -0.281 1.281 16 H -0.268 1.268 17 C -0.102 4.102 18 C -0.056 4.056 19 C 0.023 3.977 20 C -0.109 4.109 21 C -0.127 4.127 22 C -0.129 4.129 23 C -0.156 4.156 24 C 0.108 3.892 25 N -0.487 5.487 26 C 0.036 3.964 27 C 0.033 3.967 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.277 0.723 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.115 0.885 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.080 0.920 44 H 0.014 0.986 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.073 0.927 48 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.234 11.885 1.667 12.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.023 3.977 3 C -0.201 4.201 4 O -0.221 6.221 5 C 0.009 3.991 6 C -0.201 4.201 7 C -0.200 4.200 8 C 0.083 3.917 9 C -0.503 4.503 10 H 0.090 0.910 11 C -0.139 4.139 12 N -0.437 5.437 13 Si 0.729 3.271 14 H -0.191 1.191 15 H -0.206 1.206 16 H -0.193 1.193 17 C -0.122 4.122 18 C -0.056 4.056 19 C 0.023 3.977 20 C -0.128 4.128 21 C -0.145 4.145 22 C -0.148 4.148 23 C -0.176 4.176 24 C 0.014 3.986 25 N -0.206 5.206 26 C -0.111 4.111 27 C -0.114 4.114 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.099 0.901 44 H 0.033 0.967 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.092 0.908 48 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 0.107 11.683 1.634 11.797 hybrid contribution -0.043 -0.555 0.642 0.850 sum 0.064 11.128 2.275 11.358 Atomic orbital electron populations 1.22350 0.96322 1.03070 1.01427 1.22053 0.93581 0.92775 0.89253 1.21803 1.01642 0.94841 1.01819 1.85937 1.82257 1.17657 1.36250 1.18346 1.04343 0.80708 0.95684 1.20376 1.06627 0.95427 0.97666 1.20674 1.05518 0.92713 1.01046 1.17423 0.90078 0.93350 0.90881 1.19295 1.46263 0.91133 0.93621 0.90951 1.25745 0.92755 1.00394 0.95030 1.69805 1.35456 1.37987 1.00423 0.86454 0.79988 0.82758 0.77913 1.19125 1.20589 1.19330 1.21167 1.01286 0.89721 1.00001 1.17632 1.03766 0.92462 0.91782 1.18793 0.91525 0.93893 0.93532 1.21240 0.94735 0.99448 0.97383 1.20960 0.99131 0.98794 0.95628 1.20814 0.93257 1.00931 0.99793 1.21450 0.95932 1.01857 0.98409 1.18719 0.89369 0.97187 0.93317 1.59244 1.00669 1.17255 1.43462 1.22426 1.00466 0.87892 1.00307 1.22401 0.98172 0.99758 0.91026 0.92659 0.91517 0.92167 0.92051 0.92227 0.91665 0.92235 0.88495 0.88952 0.91267 0.86130 0.85976 0.86705 0.87099 0.87249 0.90091 0.96728 0.92111 0.91584 0.90808 0.96380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 9.13 37.16 0.34 -2.11 16 2 C 0.08 1.24 2.85 -26.73 -0.08 1.16 16 3 C -0.14 -1.77 9.56 37.16 0.36 -1.42 16 4 O -0.31 -5.81 6.73 -18.56 -0.12 -5.94 16 5 C 0.05 1.16 6.25 -38.43 -0.24 0.92 16 6 C -0.18 -4.00 8.10 -39.90 -0.32 -4.32 16 7 C -0.18 -4.35 9.72 -39.22 -0.38 -4.73 16 8 C 0.08 2.23 5.50 -106.84 -0.59 1.64 16 9 C -0.47 -12.54 9.02 -37.84 -0.34 -12.88 16 10 H 0.07 1.86 7.87 -52.49 -0.41 1.44 16 11 C 0.08 1.93 5.20 -17.35 -0.09 1.84 16 12 N -0.81 -21.29 11.11 55.54 0.62 -20.68 16 13 Si 0.90 19.16 29.58 -169.99 -5.03 14.13 16 14 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 15 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 16 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 17 C -0.10 -2.61 8.31 -38.55 -0.32 -2.93 16 18 C -0.06 -1.28 4.91 -104.81 -0.51 -1.80 16 19 C 0.02 0.49 4.95 -104.72 -0.52 -0.03 16 20 C -0.11 -2.03 9.73 -39.27 -0.38 -2.41 16 21 C -0.13 -2.00 10.03 -39.60 -0.40 -2.39 16 22 C -0.13 -1.95 10.03 -39.55 -0.40 -2.35 16 23 C -0.16 -2.56 8.61 -39.42 -0.34 -2.90 16 24 C 0.11 2.03 4.41 -83.52 -0.37 1.67 16 25 N -0.49 -8.86 3.77 -186.61 -0.70 -9.57 16 26 C 0.04 0.55 9.07 60.06 0.54 1.10 16 27 C 0.03 0.56 9.33 60.07 0.56 1.12 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.08 6.72 -51.93 -0.35 0.73 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.97 6.40 -51.93 -0.33 0.64 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 1.88 5.31 -52.49 -0.28 1.60 16 36 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 37 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 38 H 0.12 3.25 6.49 -52.49 -0.34 2.91 16 39 H 0.12 2.19 8.06 -52.48 -0.42 1.76 16 40 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 41 H 0.11 1.36 8.06 -52.48 -0.42 0.93 16 42 H 0.11 1.59 7.04 -52.49 -0.37 1.22 16 43 H 0.08 1.31 6.45 -51.93 -0.33 0.98 16 44 H 0.01 0.20 7.12 -51.93 -0.37 -0.17 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.07 1.39 8.12 -51.93 -0.42 0.96 16 48 H 0.02 0.26 7.47 -51.93 -0.39 -0.13 16 LS Contribution 383.75 15.07 5.78 5.78 Total: -1.00 -28.11 383.75 -10.32 -38.43 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -7.38 Total: 8.66 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: -3.48 Total: -30.83 kcal Atomic # 7 Polarization: -30.15 SS G_CDS: -0.09 Total: -30.24 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.12 Total: -5.94 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -28.11 -10.32 -38.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592986310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.478 kcal (2) G-P(sol) polarization free energy of solvation -28.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds