Wall clock time and date at job start Tue Mar 31 2020 14:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46898 * 2 1 4 4 O 1.42890 * 109.47288 * 120.00150 * 2 1 3 5 5 C 1.35621 * 117.00059 * 83.79713 * 4 2 1 6 6 C 1.39126 * 119.88374 * 353.98784 * 5 4 2 7 7 C 1.36434 * 120.44087 * 180.27410 * 6 5 4 8 8 C 1.40922 * 120.18984 * 359.71978 * 7 6 5 9 9 C 1.41247 * 120.11479 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99635 * 31.53361 * 9 8 7 11 11 C 1.39849 * 119.99708 * 211.53971 * 9 8 7 12 12 N 1.30895 * 120.00435 * 12.17356 * 11 9 8 13 13 Si 1.86799 * 119.99647 * 192.17309 * 11 9 8 14 14 H 1.48497 * 109.47426 * 59.99820 * 13 11 9 15 15 H 1.48505 * 109.47019 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47401 * 299.99900 * 13 11 9 17 17 C 1.40608 * 119.76808 * 359.97438 * 8 7 6 18 18 C 1.38611 * 119.56698 * 359.97438 * 17 8 7 19 19 C 1.48259 * 120.10091 * 180.02562 * 18 17 8 20 20 C 1.39302 * 120.15970 * 65.27722 * 19 18 17 21 21 C 1.38016 * 119.94723 * 180.27736 * 20 19 18 22 22 C 1.38411 * 120.27849 * 359.74537 * 21 20 19 23 23 C 1.38139 * 120.33126 * 359.97438 * 22 21 20 24 24 C 1.38765 * 120.04475 * 359.97438 * 23 22 21 25 25 N 1.39493 * 120.13943 * 180.02562 * 24 23 22 26 26 C 1.46900 * 111.00175 * 60.00189 * 25 24 23 27 27 C 1.46905 * 110.99977 * 296.04823 * 25 24 23 28 28 H 1.09004 * 109.46925 * 60.00037 * 1 2 3 29 29 H 1.09001 * 109.46983 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47097 * 299.99678 * 1 2 3 31 31 H 1.08999 * 109.47097 * 240.00321 * 2 1 3 32 32 H 1.08997 * 109.46961 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47120 * 300.00347 * 3 2 1 34 34 H 1.09000 * 109.46461 * 60.00201 * 3 2 1 35 35 H 1.07994 * 119.77993 * 359.97438 * 6 5 4 36 36 H 1.07994 * 119.90526 * 179.70117 * 7 6 5 37 37 H 0.96997 * 120.00444 * 180.02562 * 12 11 9 38 38 H 1.07994 * 120.21559 * 180.02562 * 17 8 7 39 39 H 1.08004 * 120.02748 * 0.02562 * 20 19 18 40 40 H 1.08001 * 119.86169 * 179.76356 * 21 20 19 41 41 H 1.08004 * 119.83669 * 179.97438 * 22 21 20 42 42 H 1.07999 * 119.98018 * 180.02562 * 23 22 21 43 43 H 1.08993 * 109.47362 * 59.99911 * 26 25 24 44 44 H 1.09000 * 109.46731 * 300.00053 * 26 25 24 45 45 H 1.09000 * 109.47069 * 180.02562 * 26 25 24 46 46 H 1.08999 * 109.46819 * 183.95573 * 27 25 24 47 47 H 1.09004 * 109.46755 * 303.95364 * 27 25 24 48 48 H 1.09003 * 109.47296 * 63.95132 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0885 -2.0260 1.1064 6 6 1.6003 -2.7011 -0.0078 7 6 1.6721 -4.0618 -0.0779 8 6 2.2481 -4.7964 0.9778 9 6 2.3221 -6.2049 0.9033 10 1 2.4359 -6.6897 -0.0550 11 6 2.2479 -6.9716 2.0706 12 7 1.8746 -6.4166 3.1957 13 14 2.6817 -8.7880 2.0240 14 1 4.0886 -8.9497 1.5773 15 1 2.5226 -9.3698 3.3810 16 1 1.7780 -9.4886 1.0765 17 6 2.7500 -4.1221 2.1050 18 6 2.6730 -2.7395 2.1654 19 6 3.1989 -2.0164 3.3481 20 6 4.5625 -2.0379 3.6321 21 6 5.0467 -1.3680 4.7374 22 6 4.1834 -0.6694 5.5636 23 6 2.8299 -0.6357 5.2895 24 6 2.3286 -1.3035 4.1812 25 7 0.9623 -1.2703 3.9023 26 6 0.5013 0.1085 3.6914 27 6 0.1915 -1.9260 4.9672 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.1572 -2.1448 -0.8205 36 1 1.2860 -4.5774 -0.9447 37 1 1.8235 -6.9483 4.0053 38 1 3.1933 -4.6778 2.9180 39 1 5.2398 -2.5816 2.9902 40 1 6.1036 -1.3887 4.9585 41 1 4.5699 -0.1481 6.4269 42 1 2.1615 -0.0885 5.9377 43 1 1.0401 0.5473 2.8518 44 1 0.6889 0.6957 4.5904 45 1 -0.5672 0.1054 3.4762 46 1 -0.8629 -1.9483 4.6915 47 1 0.5532 -2.9453 5.1025 48 1 0.3122 -1.3711 5.8976 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592986310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:14 Heat of formation + Delta-G solvation = 1.823876 kcal Electronic energy + Delta-G solvation = -28855.703121 eV Core-core repulsion = 25261.092401 eV Total energy + Delta-G solvation = -3594.610720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.13541 -40.06733 -38.25346 -37.23283 -35.27104 -33.84331 -33.05207 -30.83030 -30.77709 -29.49864 -28.41677 -28.05207 -26.62954 -25.34922 -24.15051 -23.41575 -21.97402 -21.52627 -21.13544 -19.09029 -18.59437 -17.73914 -16.98497 -16.64214 -16.35889 -16.19891 -15.88692 -15.72455 -15.36403 -15.06255 -14.92921 -14.64502 -14.44704 -14.11570 -13.94673 -13.52647 -13.45581 -13.29401 -13.13808 -13.10626 -13.04724 -12.89106 -12.76549 -12.67004 -12.56348 -12.46064 -12.31216 -12.19430 -11.93288 -11.72285 -11.55824 -11.31128 -11.02019 -10.79863 -9.77007 -9.54174 -9.16991 -9.05948 -8.60811 -8.41711 -6.15207 0.44212 0.50207 1.11791 1.13848 1.39166 1.49906 1.55707 2.27088 2.77624 2.82244 2.93926 3.10031 3.74233 4.02065 4.05124 4.10461 4.18214 4.23920 4.30350 4.30779 4.40728 4.45349 4.52466 4.60811 4.64883 4.67560 4.78796 4.82634 4.87311 4.94146 4.94191 4.98914 4.99413 5.07285 5.17287 5.18082 5.31396 5.34970 5.39845 5.41620 5.52902 5.58177 5.66401 5.73525 5.81342 5.98823 6.05782 6.17324 6.20364 6.39145 6.66395 6.70449 6.96344 7.06736 7.24716 8.51399 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.010745 B = 0.005331 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.174709 B = 5250.998083 C = 6550.871064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.068 3.932 3 C -0.136 4.136 4 O -0.307 6.307 5 C 0.066 3.934 6 C -0.183 4.183 7 C -0.195 4.195 8 C 0.050 3.950 9 C -0.508 4.508 10 H 0.069 0.931 11 C 0.034 3.966 12 N -0.843 5.843 13 Si 0.974 3.026 14 H -0.262 1.262 15 H -0.272 1.272 16 H -0.263 1.263 17 C -0.120 4.120 18 C -0.058 4.058 19 C -0.017 4.017 20 C -0.127 4.127 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.157 4.157 24 C 0.099 3.901 25 N -0.514 5.514 26 C 0.042 3.958 27 C 0.039 3.961 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.280 0.720 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.147 0.853 41 H 0.151 0.849 42 H 0.133 0.867 43 H 0.070 0.930 44 H 0.033 0.967 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.040 0.960 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.309 14.509 2.616 14.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.011 3.989 3 C -0.193 4.193 4 O -0.222 6.222 5 C 0.022 3.978 6 C -0.202 4.202 7 C -0.215 4.215 8 C 0.049 3.951 9 C -0.539 4.539 10 H 0.087 0.913 11 C -0.177 4.177 12 N -0.471 5.471 13 Si 0.796 3.204 14 H -0.187 1.187 15 H -0.197 1.197 16 H -0.187 1.187 17 C -0.140 4.140 18 C -0.058 4.058 19 C -0.018 4.018 20 C -0.146 4.146 21 C -0.141 4.141 22 C -0.136 4.136 23 C -0.177 4.177 24 C 0.005 3.995 25 N -0.234 5.234 26 C -0.105 4.105 27 C -0.107 4.107 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.141 0.859 36 H 0.115 0.885 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.131 0.869 40 H 0.165 0.835 41 H 0.169 0.831 42 H 0.151 0.849 43 H 0.089 0.911 44 H 0.052 0.948 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.059 0.941 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.177 14.336 2.567 14.565 hybrid contribution -0.071 -1.120 0.337 1.172 sum 0.106 13.216 2.904 13.532 Atomic orbital electron populations 1.22286 0.95073 1.01884 1.03218 1.22456 0.94660 0.94119 0.87634 1.21786 1.01313 0.92606 1.03565 1.85954 1.82178 1.15813 1.38284 1.18429 1.02426 0.82202 0.94779 1.20631 1.06182 0.94772 0.98568 1.20830 1.05966 0.93826 1.00843 1.17747 0.91376 0.93945 0.92080 1.19524 1.48414 0.91859 0.94146 0.91319 1.26542 0.92075 1.04834 0.94279 1.69906 1.36501 1.39678 1.01026 0.85377 0.79728 0.77054 0.78225 1.18675 1.19669 1.18701 1.20977 1.02624 0.90954 0.99395 1.17869 1.02909 0.91841 0.93229 1.18888 0.92942 0.95955 0.94029 1.21329 0.94033 1.00418 0.98776 1.21294 1.00994 0.97547 0.94256 1.21282 0.92582 0.99538 1.00165 1.21703 0.97055 1.01327 0.97636 1.18817 0.89471 0.97284 0.93910 1.59159 1.00785 1.19060 1.44438 1.22393 1.00795 0.86532 1.00751 1.22311 0.98262 0.98172 0.91988 0.89603 0.94117 0.91665 0.92603 0.92755 0.88659 0.91703 0.85858 0.88494 0.91014 0.88664 0.86917 0.83530 0.83136 0.84925 0.91080 0.94838 0.91072 0.90650 0.94137 0.93942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.35 9.13 71.98 0.66 -3.69 16 2 C 0.07 1.97 2.85 30.60 0.09 2.05 16 3 C -0.14 -2.96 9.56 71.98 0.69 -2.27 16 4 O -0.31 -11.54 6.73 -89.33 -0.60 -12.15 16 5 C 0.07 2.97 6.25 23.02 0.14 3.11 16 6 C -0.18 -8.23 8.10 22.06 0.18 -8.05 16 7 C -0.20 -9.91 9.72 22.51 0.22 -9.69 16 8 C 0.05 2.82 5.50 -21.30 -0.12 2.70 16 9 C -0.51 -28.70 9.02 23.40 0.21 -28.49 16 10 H 0.07 3.75 7.87 -2.91 -0.02 3.73 16 11 C 0.03 1.83 5.20 85.22 0.44 2.28 16 12 N -0.84 -46.91 11.11 21.81 0.24 -46.66 16 13 Si 0.97 40.77 29.58 68.60 2.03 42.80 16 14 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 15 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 16 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 17 C -0.12 -6.56 8.31 22.94 0.19 -6.37 16 18 C -0.06 -2.79 4.91 -19.99 -0.10 -2.89 16 19 C -0.02 -0.73 4.95 -19.93 -0.10 -0.83 16 20 C -0.13 -4.77 9.73 22.47 0.22 -4.55 16 21 C -0.12 -3.61 10.03 22.26 0.22 -3.39 16 22 C -0.12 -3.13 10.03 22.29 0.22 -2.91 16 23 C -0.16 -4.73 8.61 22.37 0.19 -4.53 16 24 C 0.10 3.68 4.41 38.47 0.17 3.85 16 25 N -0.51 -18.43 3.77 -744.30 -2.81 -21.24 16 26 C 0.04 1.19 9.07 127.69 1.16 2.35 16 27 C 0.04 1.30 9.33 127.69 1.19 2.49 16 28 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.04 1.27 6.72 -2.39 -0.02 1.25 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.06 1.69 6.40 -2.39 -0.02 1.67 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.12 4.76 5.31 -2.91 -0.02 4.75 16 36 H 0.10 4.67 8.06 -2.91 -0.02 4.64 16 37 H 0.28 14.37 8.30 -92.71 -0.77 13.60 16 38 H 0.10 5.59 6.49 -2.91 -0.02 5.57 16 39 H 0.11 4.27 8.06 -2.91 -0.02 4.25 16 40 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 41 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 42 H 0.13 3.33 7.04 -2.91 -0.02 3.31 16 43 H 0.07 2.16 6.45 -2.39 -0.02 2.15 16 44 H 0.03 0.82 7.12 -2.39 -0.02 0.80 16 45 H 0.07 1.84 8.14 -2.39 -0.02 1.83 16 46 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.04 1.57 8.12 -2.38 -0.02 1.55 16 48 H 0.04 1.16 7.47 -2.39 -0.02 1.14 16 Total: -1.00 -65.86 383.75 5.69 -60.17 By element: Atomic # 1 Polarization: 34.97 SS G_CDS: 0.94 Total: 35.92 kcal Atomic # 6 Polarization: -64.72 SS G_CDS: 5.88 Total: -58.84 kcal Atomic # 7 Polarization: -65.34 SS G_CDS: -2.56 Total: -67.91 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -0.60 Total: -12.15 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -65.86 5.69 -60.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592986310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.994 kcal (2) G-P(sol) polarization free energy of solvation -65.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds