Wall clock time and date at job start Tue Mar 31 2020 14:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47226 * 2 1 4 4 N 1.46897 * 109.47496 * 181.12167 * 3 2 1 5 5 C 1.46897 * 110.99833 * 299.46924 * 4 3 2 6 6 C 1.50704 * 109.46954 * 294.05800 * 5 4 3 7 7 H 1.07996 * 119.99771 * 355.10673 * 6 5 4 8 8 C 1.37877 * 119.99641 * 175.09543 * 6 5 4 9 9 N 1.31508 * 120.00597 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99749 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47201 * 90.00186 * 10 8 6 12 12 H 1.48491 * 109.47275 * 210.00310 * 10 8 6 13 13 H 1.48504 * 109.46990 * 330.00418 * 10 8 6 14 14 C 1.46905 * 110.99527 * 63.41873 * 4 3 2 15 15 C 1.50702 * 109.47280 * 66.04816 * 14 4 3 16 16 C 1.38322 * 119.87377 * 89.99708 * 15 14 4 17 17 C 1.38014 * 120.11838 * 180.02562 * 16 15 14 18 18 C 1.39361 * 119.87832 * 0.02562 * 17 16 15 19 19 C 1.48363 * 120.12234 * 179.97438 * 18 17 16 20 20 C 1.39377 * 120.06581 * 359.71801 * 19 18 17 21 21 C 1.37901 * 119.93553 * 179.72000 * 20 19 18 22 22 C 1.38838 * 120.06087 * 0.55837 * 21 20 19 23 23 O 1.35878 * 119.93206 * 179.69590 * 22 21 20 24 24 C 1.38824 * 120.13183 * 359.72400 * 22 21 20 25 25 C 1.37912 * 120.06731 * 359.97438 * 24 22 21 26 26 C 1.39347 * 119.75347 * 0.25060 * 18 17 16 27 27 C 1.38021 * 119.87769 * 359.47438 * 26 18 17 28 28 H 1.08997 * 109.47439 * 59.99739 * 1 2 3 29 29 H 1.09001 * 109.46999 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47135 * 299.99975 * 1 2 3 31 31 H 1.09001 * 109.46845 * 240.00439 * 2 1 3 32 32 H 1.08998 * 109.46963 * 120.00490 * 2 1 3 33 33 H 1.09000 * 109.46794 * 61.12369 * 3 2 1 34 34 H 1.09008 * 109.47408 * 301.12910 * 3 2 1 35 35 H 1.08996 * 109.47613 * 54.06517 * 5 4 3 36 36 H 1.09007 * 109.46959 * 174.06574 * 5 4 3 37 37 H 0.96996 * 120.00483 * 179.97438 * 9 8 6 38 38 H 1.09000 * 109.47343 * 306.04730 * 14 4 3 39 39 H 1.08996 * 109.47219 * 186.04841 * 14 4 3 40 40 H 1.07996 * 119.94172 * 359.97438 * 16 15 14 41 41 H 1.07997 * 120.06149 * 179.97438 * 17 16 15 42 42 H 1.08009 * 120.03120 * 359.97438 * 20 19 18 43 43 H 1.07999 * 119.97365 * 180.25823 * 21 20 19 44 44 H 0.96696 * 114.00153 * 270.02624 * 23 22 21 45 45 H 1.08001 * 119.96559 * 179.97438 * 24 22 21 46 46 H 1.07999 * 120.03043 * 179.97438 * 25 24 22 47 47 H 1.07997 * 120.06377 * 179.74923 * 26 18 17 48 48 H 1.08000 * 119.94338 * 180.25731 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5088 1.4426 -0.0271 5 6 4.0571 0.7602 1.1525 6 6 3.7190 1.5489 2.3914 7 1 3.2230 2.5043 2.3047 8 6 4.0429 1.0506 3.6355 9 7 4.6473 -0.1126 3.7411 10 14 3.6233 2.0279 5.1712 11 1 2.2686 1.6469 5.6456 12 1 4.6199 1.7347 6.2322 13 1 3.6476 3.4790 4.8565 14 6 4.0124 0.8370 -1.2671 15 6 3.6321 1.7035 -2.4400 16 6 4.4838 2.7102 -2.8577 17 6 4.1403 3.5071 -3.9309 18 6 2.9326 3.2964 -4.5936 19 6 2.5577 4.1503 -5.7475 20 6 3.4102 5.1695 -6.1681 21 6 3.0617 5.9578 -7.2446 22 6 1.8576 5.7444 -7.9020 23 8 1.5140 6.5267 -8.9585 24 6 1.0037 4.7338 -7.4816 25 6 1.3497 3.9382 -6.4096 26 6 2.0758 2.2846 -4.1647 27 6 2.4320 1.4899 -3.0940 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6932 1.9504 0.8999 34 1 1.6603 1.9622 -0.8797 35 1 3.6257 -0.2379 1.2282 36 1 5.1400 0.6817 1.0561 37 1 4.8755 -0.4629 4.6164 38 1 3.5757 -0.1540 -1.3909 39 1 5.0978 0.7518 -1.2152 40 1 5.4189 2.8733 -2.3427 41 1 4.8058 4.2930 -4.2560 42 1 4.3448 5.3391 -5.6540 43 1 3.7238 6.7451 -7.5736 44 1 1.0152 7.3187 -8.7157 45 1 0.0675 4.5704 -7.9947 46 1 0.6848 3.1524 -6.0828 47 1 1.1368 2.1196 -4.6721 48 1 1.7706 0.7027 -2.7633 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237665909.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:26 Heat of formation + Delta-G solvation = 2.686576 kcal Electronic energy + Delta-G solvation = -26409.252412 eV Core-core repulsion = 22814.679101 eV Total energy + Delta-G solvation = -3594.573310 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.24239 -39.19705 -37.51598 -36.53935 -32.90333 -32.78023 -31.67185 -31.50807 -30.55748 -29.05618 -26.89421 -25.97812 -24.07143 -23.69479 -22.48991 -22.11353 -21.61116 -20.72898 -19.23345 -18.73162 -17.16708 -16.27654 -16.02058 -15.81928 -15.35391 -15.16065 -14.93700 -14.54656 -14.31377 -14.06990 -13.95011 -13.81856 -13.56285 -13.17277 -13.08698 -13.01978 -12.39719 -12.31821 -12.10228 -11.90845 -11.62949 -11.36653 -11.28838 -11.09157 -10.92038 -10.89818 -10.79666 -10.66004 -10.50603 -10.41074 -9.93645 -9.72617 -9.45851 -9.28743 -9.18781 -8.77418 -8.43785 -7.88339 -7.15131 -6.02939 -4.03728 0.52536 1.09551 1.56506 1.80081 3.30979 3.35750 3.37608 3.42091 3.90262 4.05998 4.43358 4.52345 4.52863 4.66403 4.96591 5.01127 5.10375 5.12800 5.17154 5.25384 5.32998 5.46276 5.52308 5.53365 5.62585 5.64755 5.72978 5.84875 5.86069 5.89189 6.05647 6.11003 6.14335 6.16099 6.19604 6.25660 6.34887 6.41791 6.46449 6.50291 6.60930 6.69984 6.74553 6.88475 6.97630 7.11864 7.30643 7.33404 7.42046 7.80861 8.08752 8.19430 8.54773 9.04401 9.60372 11.07588 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.020182 B = 0.002323 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.069764 B =12052.804606 C =12470.954040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.164 4.164 3 C 0.064 3.936 4 N -0.528 5.528 5 C 0.189 3.811 6 C -0.503 4.503 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.082 3.918 15 C -0.050 4.050 16 C -0.099 4.099 17 C -0.109 4.109 18 C -0.065 4.065 19 C -0.038 4.038 20 C -0.099 4.099 21 C -0.141 4.141 22 C 0.095 3.905 23 O -0.501 6.501 24 C -0.141 4.141 25 C -0.099 4.099 26 C -0.110 4.110 27 C -0.113 4.113 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.004 0.996 36 H 0.024 0.976 37 H 0.261 0.739 38 H 0.038 0.962 39 H 0.075 0.925 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.389 0.611 45 H 0.128 0.872 46 H 0.130 0.870 47 H 0.120 0.880 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.467 7.975 -21.249 23.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.203 4.203 3 C -0.064 4.064 4 N -0.251 5.251 5 C 0.064 3.936 6 C -0.542 4.542 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.046 4.046 15 C -0.051 4.051 16 C -0.117 4.117 17 C -0.127 4.127 18 C -0.065 4.065 19 C -0.038 4.038 20 C -0.117 4.117 21 C -0.159 4.159 22 C 0.050 3.950 23 O -0.311 6.311 24 C -0.160 4.160 25 C -0.117 4.117 26 C -0.128 4.128 27 C -0.131 4.131 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.021 0.979 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.094 0.906 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.244 0.756 45 H 0.146 0.854 46 H 0.148 0.852 47 H 0.138 0.862 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.910 7.915 -21.404 23.573 hybrid contribution -0.723 -0.045 1.177 1.382 sum -6.633 7.870 -20.226 22.694 Atomic orbital electron populations 1.21654 0.96523 1.00658 1.01217 1.22182 0.95496 1.00466 1.02142 1.22088 0.88385 0.94392 1.01574 1.62395 1.06653 1.54695 1.01367 1.19807 0.94832 0.92971 0.86003 1.21127 1.38066 1.05025 0.89938 0.91968 1.24968 0.95437 0.95083 0.99096 1.69948 1.41538 1.18325 1.24059 0.86539 0.77984 0.80479 0.82681 1.20790 1.21314 1.19801 1.21121 1.00375 0.94169 0.88968 1.20088 0.93761 0.95924 0.95319 1.21006 1.00142 0.94671 0.95884 1.21155 0.95945 0.99517 0.96055 1.18619 0.95488 0.96696 0.95684 1.18888 0.94415 0.95426 0.95087 1.21160 0.99677 0.94632 0.96199 1.21346 0.97351 1.01237 0.96001 1.18534 0.93878 0.93799 0.88748 1.84817 1.76865 1.38724 1.30734 1.21340 1.00107 0.97100 0.97425 1.21145 0.96197 0.99320 0.95063 1.21096 0.99002 0.95474 0.97208 1.21041 0.96528 0.99903 0.95663 0.93570 0.93619 0.92721 0.93127 0.90475 0.90257 0.92633 0.97871 0.95759 0.92984 0.94398 0.90610 0.85601 0.86110 0.85115 0.85344 0.75566 0.85377 0.85203 0.86232 0.86043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.91 37.16 0.37 -1.70 16 2 C -0.16 -2.85 5.17 -26.73 -0.14 -2.99 16 3 C 0.06 1.21 4.79 -3.83 -0.02 1.19 16 4 N -0.53 -10.98 4.69 -237.51 -1.12 -12.09 16 5 C 0.19 4.73 4.48 -4.98 -0.02 4.71 16 6 C -0.50 -13.80 8.41 -34.44 -0.29 -14.09 16 7 H 0.06 1.72 7.29 -52.49 -0.38 1.33 16 8 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.26 13.29 55.43 0.74 -25.53 16 10 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 14 C 0.08 1.42 4.92 -4.97 -0.02 1.40 16 15 C -0.05 -0.76 4.90 -104.56 -0.51 -1.28 16 16 C -0.10 -1.39 9.68 -39.63 -0.38 -1.78 16 17 C -0.11 -1.36 9.43 -39.25 -0.37 -1.73 16 18 C -0.06 -0.80 5.88 -104.90 -0.62 -1.41 16 19 C -0.04 -0.42 5.88 -104.88 -0.62 -1.04 16 20 C -0.10 -0.98 9.42 -39.28 -0.37 -1.35 16 21 C -0.14 -1.30 9.97 -39.48 -0.39 -1.69 16 22 C 0.09 0.89 6.71 -39.14 -0.26 0.62 16 23 O -0.50 -4.07 13.50 -19.36 -0.26 -4.33 16 24 C -0.14 -1.29 9.97 -39.48 -0.39 -1.69 16 25 C -0.10 -0.98 9.42 -39.28 -0.37 -1.35 16 26 C -0.11 -1.35 9.43 -39.25 -0.37 -1.72 16 27 C -0.11 -1.54 7.89 -39.63 -0.31 -1.85 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.82 5.71 -51.93 -0.30 0.53 16 32 H 0.08 1.60 6.35 -51.93 -0.33 1.27 16 33 H 0.08 1.67 6.94 -51.93 -0.36 1.31 16 34 H 0.06 0.96 5.92 -51.92 -0.31 0.65 16 35 H 0.00 0.09 6.04 -51.93 -0.31 -0.22 16 36 H 0.02 0.65 7.93 -51.93 -0.41 0.24 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.04 0.65 6.03 -51.93 -0.31 0.34 16 39 H 0.08 1.32 7.87 -51.93 -0.41 0.91 16 40 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.12 1.23 6.20 -52.49 -0.33 0.91 16 42 H 0.13 1.10 6.20 -52.48 -0.33 0.78 16 43 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 44 H 0.39 1.28 9.06 45.56 0.41 1.70 16 45 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 46 H 0.13 1.08 6.20 -52.49 -0.33 0.75 16 47 H 0.12 1.19 6.20 -52.49 -0.33 0.86 16 48 H 0.12 1.57 7.28 -52.49 -0.38 1.19 16 LS Contribution 382.18 15.07 5.76 5.76 Total: -1.00 -31.14 382.18 -11.16 -42.30 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -6.07 Total: 3.72 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: -5.19 Total: -26.29 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: -0.38 Total: -37.62 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.26 Total: -4.33 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.14 -11.16 -42.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237665909.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.990 kcal (2) G-P(sol) polarization free energy of solvation -31.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds