Wall clock time and date at job start Tue Mar 31 2020 16:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38319 * 119.88379 * 2 1 4 4 C 1.38029 * 120.11507 * 180.02562 * 3 2 1 5 5 C 1.39298 * 119.88165 * 359.97084 * 4 3 2 6 6 C 1.48478 * 120.11200 * 180.02562 * 5 4 3 7 7 C 1.40838 * 126.22547 * 0.02562 * 6 5 4 8 8 N 1.30677 * 108.09851 * 179.71661 * 7 6 5 9 9 N 1.40011 * 108.52276 * 0.43896 * 8 7 6 10 10 C 1.46503 * 125.89359 * 179.81526 * 9 8 7 11 11 N 1.46903 * 109.47103 * 274.69075 * 10 9 8 12 12 C 1.46896 * 110.99924 * 169.99721 * 11 10 9 13 13 C 1.50699 * 109.47638 * 284.09902 * 12 11 10 14 14 H 1.07999 * 119.99806 * 4.77485 * 13 12 11 15 15 C 1.37871 * 120.00118 * 184.78003 * 13 12 11 16 16 N 1.31510 * 120.00358 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99818 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46968 * 90.00327 * 17 15 13 19 19 H 1.48499 * 109.47240 * 209.99645 * 17 15 13 20 20 H 1.48496 * 109.47478 * 329.99861 * 17 15 13 21 21 C 1.46893 * 111.00119 * 293.95532 * 11 10 9 22 22 C 1.53004 * 109.47358 * 163.86359 * 21 11 10 23 23 C 1.53004 * 117.49866 * 245.43172 * 22 21 11 24 24 C 1.52997 * 117.50171 * 176.77537 * 22 21 11 25 25 C 1.34825 * 108.21045 * 359.55436 * 9 8 7 26 26 C 1.39296 * 119.76885 * 0.28458 * 5 4 3 27 27 C 1.38031 * 119.87994 * 359.45873 * 26 5 4 28 28 H 1.08994 * 109.47287 * 90.00064 * 1 2 3 29 29 H 1.09000 * 109.47406 * 210.00546 * 1 2 3 30 30 H 1.09003 * 109.46760 * 330.00175 * 1 2 3 31 31 H 1.07995 * 119.93659 * 359.97438 * 3 2 1 32 32 H 1.08002 * 120.05783 * 179.97438 * 4 3 2 33 33 H 1.07998 * 125.95427 * 359.97438 * 7 6 5 34 34 H 1.08999 * 109.46892 * 34.68931 * 10 9 8 35 35 H 1.08996 * 109.47077 * 154.69457 * 10 9 8 36 36 H 1.09008 * 109.47129 * 44.10104 * 12 11 10 37 37 H 1.09004 * 109.46836 * 164.09574 * 12 11 10 38 38 H 0.97000 * 120.00189 * 180.02562 * 16 15 13 39 39 H 1.09004 * 109.47399 * 283.86478 * 21 11 10 40 40 H 1.08998 * 109.47430 * 43.86334 * 21 11 10 41 41 H 1.08994 * 115.55022 * 31.09889 * 22 21 11 42 42 H 1.08999 * 117.49655 * 0.02562 * 23 22 21 43 43 H 1.09003 * 117.49838 * 145.01641 * 23 22 21 44 44 H 1.09003 * 117.49744 * 214.97733 * 24 22 21 45 45 H 1.08999 * 117.49601 * 359.97438 * 24 22 21 46 46 H 1.08001 * 126.19104 * 180.24679 * 25 9 8 47 47 H 1.08003 * 120.05851 * 179.70356 * 26 5 4 48 48 H 1.07996 * 119.93960 * 180.25588 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1993 0.0000 4 6 3.5764 1.2048 -0.0005 5 6 4.2753 -0.0001 -0.0005 6 6 5.7601 -0.0001 -0.0005 7 6 6.5924 1.1360 0.0000 8 7 7.8343 0.7295 0.0060 9 7 7.8440 -0.6706 -0.0006 10 6 9.0368 -1.5212 -0.0009 11 7 9.5056 -1.7068 -1.3807 12 6 10.8252 -2.3515 -1.4060 13 6 11.8829 -1.3462 -1.0296 14 1 11.5970 -0.3518 -0.7204 15 6 13.2156 -1.6960 -1.0801 16 7 13.5638 -2.9071 -1.4562 17 14 14.5266 -0.4496 -0.6141 18 1 14.8112 -0.5507 0.8399 19 1 15.7674 -0.7260 -1.3817 20 1 14.0435 0.9186 -0.9301 21 6 8.5307 -2.4717 -2.1695 22 6 8.8379 -2.3065 -3.6592 23 6 7.8029 -1.5762 -4.5173 24 6 7.9755 -3.0914 -4.6497 25 6 6.5663 -1.1008 -0.0008 26 6 3.5764 -1.2050 -0.0059 27 6 2.1961 -1.1993 0.0001 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6533 2.1328 -0.0004 32 1 4.1136 2.1418 -0.0010 33 1 6.2618 2.1642 0.0000 34 1 9.8214 -1.0470 0.5887 35 1 8.7918 -2.4906 0.4330 36 1 10.8397 -3.1777 -0.6950 37 1 11.0249 -2.7311 -2.4082 38 1 14.5014 -3.1533 -1.4914 39 1 8.5927 -3.5262 -1.9005 40 1 7.5262 -2.1025 -1.9627 41 1 9.8892 -2.1648 -3.9095 42 1 6.9032 -1.2131 -4.0205 43 1 8.1733 -0.9544 -5.3323 44 1 8.4595 -3.4657 -5.5518 45 1 7.1895 -3.7257 -4.2401 46 1 6.2400 -2.1304 -0.0015 47 1 4.1135 -2.1420 -0.0107 48 1 1.6532 -2.1329 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103459306.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:53 Heat of formation + Delta-G solvation = 129.667017 kcal Electronic energy + Delta-G solvation = -26708.652727 eV Core-core repulsion = 23151.878453 eV Total energy + Delta-G solvation = -3556.774274 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.07589 -39.10993 -37.83698 -35.73316 -33.58532 -32.72423 -31.53440 -30.94293 -29.80985 -27.75519 -27.16378 -25.68260 -23.89630 -22.88289 -22.12403 -21.97961 -21.53236 -20.18619 -20.10574 -19.46190 -17.33097 -16.65494 -15.69902 -15.44814 -15.43450 -15.23371 -15.11191 -14.59662 -14.28933 -13.99879 -13.87804 -13.53533 -13.43643 -13.24846 -13.07570 -12.82309 -12.74206 -12.31038 -12.16927 -12.10882 -11.70101 -11.49826 -11.29628 -11.26184 -10.96706 -10.91324 -10.75981 -10.69484 -10.31282 -10.12192 -9.86182 -9.65144 -9.45124 -9.39558 -9.17847 -8.97990 -8.51595 -7.64510 -7.50238 -6.11086 -4.13206 1.07886 1.38297 2.20423 2.77936 3.00062 3.28772 3.35540 3.41759 3.95734 4.09412 4.37299 4.57122 4.68535 4.73029 4.78689 4.89357 4.95843 5.10230 5.12474 5.20687 5.24733 5.27350 5.32116 5.39386 5.41665 5.46804 5.55089 5.63387 5.74190 5.80688 5.85122 5.86686 5.92972 5.97620 6.04344 6.07919 6.09499 6.16638 6.36441 6.36770 6.53733 6.65326 6.69634 6.78950 6.95637 6.97506 7.02873 7.24687 7.69191 7.85467 7.96808 8.02444 8.34618 8.95219 9.52213 10.99048 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.016475 B = 0.002790 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.178614 B =10032.291757 C =11056.504708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.108 4.108 3 C -0.112 4.112 4 C -0.120 4.120 5 C 0.018 3.982 6 C -0.216 4.216 7 C 0.049 3.951 8 N -0.266 5.266 9 N -0.343 5.343 10 C 0.301 3.699 11 N -0.540 5.540 12 C 0.198 3.802 13 C -0.511 4.511 14 H 0.066 0.934 15 C 0.058 3.942 16 N -0.898 5.898 17 Si 0.898 3.102 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.272 1.272 21 C 0.081 3.919 22 C -0.130 4.130 23 C -0.176 4.176 24 C -0.187 4.187 25 C 0.070 3.930 26 C -0.125 4.125 27 C -0.112 4.112 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.179 0.821 34 H 0.119 0.881 35 H 0.060 0.940 36 H -0.007 1.007 37 H 0.045 0.955 38 H 0.262 0.738 39 H 0.031 0.969 40 H 0.060 0.940 41 H 0.115 0.885 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.168 0.832 47 H 0.118 0.882 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.743 2.153 1.588 22.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.108 4.108 3 C -0.130 4.130 4 C -0.138 4.138 5 C 0.016 3.984 6 C -0.228 4.228 7 C -0.138 4.138 8 N -0.086 5.086 9 N -0.123 5.123 10 C 0.091 3.909 11 N -0.266 5.266 12 C 0.074 3.926 13 C -0.550 4.550 14 H 0.084 0.916 15 C -0.144 4.144 16 N -0.537 5.537 17 Si 0.726 3.274 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.196 1.196 21 C -0.047 4.047 22 C -0.148 4.148 23 C -0.213 4.213 24 C -0.224 4.224 25 C -0.079 4.079 26 C -0.143 4.143 27 C -0.130 4.130 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.196 0.804 34 H 0.137 0.863 35 H 0.077 0.923 36 H 0.011 0.989 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.049 0.951 40 H 0.079 0.921 41 H 0.133 0.867 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.106 0.894 46 H 0.185 0.815 47 H 0.136 0.864 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -21.083 2.742 1.355 21.303 hybrid contribution -0.093 -0.526 0.421 0.680 sum -21.175 2.216 1.776 21.365 Atomic orbital electron populations 1.20747 0.91596 1.02420 1.02008 1.19855 0.95807 0.93275 1.01911 1.20903 0.94007 0.97318 1.00802 1.21069 0.93838 0.97454 1.01437 1.18095 0.90148 0.93024 0.97084 1.18785 0.92344 0.92348 1.19335 1.23876 0.89940 0.99280 1.00720 1.77417 1.20388 0.89354 1.21408 1.48939 1.05380 1.04701 1.53314 1.22215 0.84517 0.90918 0.93205 1.61964 1.04512 1.51222 1.08915 1.19784 0.81772 0.93155 0.97896 1.21166 0.90127 0.98867 1.44807 0.91600 1.24964 0.98687 0.95437 0.95285 1.69942 1.17375 1.18598 1.47785 0.86489 0.80845 0.81751 0.78351 1.20679 1.21252 1.19647 1.21669 0.95635 0.95228 0.92189 1.22245 0.97807 1.03087 0.91659 1.22910 1.01222 0.94073 1.03104 1.22934 1.03416 0.94386 1.01707 1.22472 0.84915 0.99492 1.00972 1.21071 0.93973 0.97296 1.01962 1.20887 0.93964 0.97337 1.00818 0.91515 0.91853 0.91835 0.86338 0.86020 0.80442 0.86319 0.92268 0.98885 0.93674 0.92810 0.95103 0.92140 0.86707 0.89463 0.89303 0.89106 0.89442 0.81492 0.86404 0.86393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.11 -1.03 5.88 -104.56 -0.62 -1.65 16 3 C -0.11 -1.10 9.68 -39.63 -0.38 -1.48 16 4 C -0.12 -1.31 9.58 -39.26 -0.38 -1.68 16 5 C 0.02 0.22 5.88 -104.89 -0.62 -0.40 16 6 C -0.22 -2.98 6.04 -105.34 -0.64 -3.62 16 7 C 0.05 0.73 11.42 -17.06 -0.19 0.53 16 8 N -0.27 -4.80 12.54 30.80 0.39 -4.41 16 9 N -0.34 -5.78 3.50 -64.11 -0.22 -6.01 16 10 C 0.30 5.48 5.99 -63.31 -0.38 5.10 16 11 N -0.54 -11.03 4.52 -239.98 -1.08 -12.12 16 12 C 0.20 4.81 4.55 -4.98 -0.02 4.79 16 13 C -0.51 -13.82 8.62 -34.44 -0.30 -14.11 16 14 H 0.07 1.82 7.67 -52.49 -0.40 1.42 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -25.72 13.29 55.43 0.74 -24.98 16 17 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.08 1.41 5.16 -3.83 -0.02 1.39 16 22 C -0.13 -2.23 5.58 -90.62 -0.51 -2.74 16 23 C -0.18 -2.65 10.18 -26.70 -0.27 -2.92 16 24 C -0.19 -2.62 10.25 -26.70 -0.27 -2.89 16 25 C 0.07 0.99 9.10 -16.89 -0.15 0.84 16 26 C -0.12 -1.37 9.57 -39.26 -0.38 -1.74 16 27 C -0.11 -1.10 9.68 -39.63 -0.38 -1.49 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 31 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.12 1.15 7.05 -52.49 -0.37 0.78 16 33 H 0.18 2.04 7.35 -52.49 -0.39 1.66 16 34 H 0.12 2.38 7.34 -51.93 -0.38 1.99 16 35 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 36 H -0.01 -0.17 8.00 -51.92 -0.42 -0.58 16 37 H 0.05 1.18 6.46 -51.93 -0.34 0.84 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.03 0.52 8.05 -51.93 -0.42 0.11 16 40 H 0.06 0.98 5.59 -51.93 -0.29 0.69 16 41 H 0.11 2.29 6.88 -51.93 -0.36 1.94 16 42 H 0.09 1.29 8.04 -51.93 -0.42 0.88 16 43 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.17 1.86 7.28 -52.49 -0.38 1.48 16 47 H 0.12 1.13 7.02 -52.48 -0.37 0.76 16 48 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 395.30 15.07 5.96 5.96 Total: -1.00 -30.36 395.30 -11.95 -42.31 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -7.46 Total: 3.83 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -5.24 Total: -20.97 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: -0.19 Total: -47.52 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.36 -11.95 -42.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103459306.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.974 kcal (2) G-P(sol) polarization free energy of solvation -30.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds