Wall clock time and date at job start Tue Mar 31 2020 16:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38278 * 119.53368 * 2 1 4 4 C 1.38501 * 119.24227 * 180.02562 * 3 2 1 5 5 C 1.39312 * 118.35470 * 0.02562 * 4 3 2 6 6 N 1.39710 * 120.48734 * 179.97438 * 5 4 3 7 7 C 1.46496 * 120.00256 * 0.03095 * 6 5 4 8 8 C 1.50702 * 109.47151 * 179.97438 * 7 6 5 9 9 C 1.38283 * 119.92231 * 269.72595 * 8 7 6 10 10 C 1.38112 * 120.06924 * 179.72592 * 9 8 7 11 11 C 1.38907 * 119.92442 * 0.54375 * 10 9 8 12 12 N 1.39674 * 120.07359 * 179.74586 * 11 10 9 13 13 C 1.46505 * 120.00201 * 179.97438 * 12 11 10 14 14 C 1.46498 * 120.00101 * 359.97438 * 12 11 10 15 15 C 1.50709 * 109.47033 * 89.99700 * 14 12 11 16 16 H 1.07992 * 119.99831 * 0.02562 * 15 14 12 17 17 C 1.37884 * 119.99890 * 180.02562 * 15 14 12 18 18 N 1.31512 * 119.99851 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99881 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47271 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47261 * 119.99529 * 19 17 15 22 22 H 1.48502 * 109.47151 * 239.99757 * 19 17 15 23 23 C 1.38917 * 119.85245 * 359.73046 * 11 10 9 24 24 C 1.38096 * 119.92232 * 359.97438 * 23 11 10 25 25 C 1.38885 * 119.01909 * 0.02562 * 5 4 3 26 26 C 1.50697 * 119.67468 * 179.97438 * 25 5 4 27 27 N 1.31824 * 120.65642 * 359.96959 * 25 5 4 28 28 H 1.08998 * 109.46851 * 269.97199 * 1 2 3 29 29 H 1.08997 * 109.47584 * 29.97162 * 1 2 3 30 30 H 1.09003 * 109.47274 * 149.97705 * 1 2 3 31 31 H 1.07996 * 120.38052 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.82126 * 180.02562 * 4 3 2 33 33 H 0.97003 * 119.99729 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.46507 * 299.99748 * 7 6 5 35 35 H 1.08993 * 109.47099 * 59.99343 * 7 6 5 36 36 H 1.07997 * 119.96350 * 359.97438 * 9 8 7 37 37 H 1.07996 * 120.03365 * 180.27343 * 10 9 8 38 38 H 1.08994 * 109.46619 * 90.00099 * 13 12 11 39 39 H 1.09000 * 109.47360 * 210.00450 * 13 12 11 40 40 H 1.09002 * 109.46988 * 330.00464 * 13 12 11 41 41 H 1.08993 * 109.47692 * 209.99506 * 14 12 11 42 42 H 1.08999 * 109.47188 * 329.99898 * 14 12 11 43 43 H 0.97002 * 119.99963 * 180.02562 * 18 17 15 44 44 H 1.08001 * 120.03524 * 179.97438 * 23 11 10 45 45 H 1.08002 * 119.96002 * 179.97438 * 24 23 11 46 46 H 1.08999 * 109.46990 * 269.97594 * 26 25 5 47 47 H 1.09001 * 109.46888 * 29.97650 * 26 25 5 48 48 H 1.08999 * 109.47328 * 149.97663 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1886 1.2031 0.0000 4 6 3.5736 1.1961 -0.0005 5 6 4.2289 -0.0333 -0.0016 6 7 5.6248 -0.0924 -0.0027 7 6 6.4103 1.1442 -0.0021 8 6 7.8790 0.8063 -0.0029 9 6 8.5530 0.6564 1.1952 10 6 9.8976 0.3412 1.1980 11 6 10.5755 0.1860 -0.0044 12 7 11.9366 -0.1275 -0.0052 13 6 12.6499 -0.2915 -1.2743 14 6 12.6510 -0.2925 1.2631 15 6 12.5770 -1.7337 1.6976 16 1 12.0508 -2.4546 1.0896 17 6 13.1811 -2.1318 2.8714 18 7 13.8222 -1.2539 3.6115 19 14 13.0887 -3.9179 3.4103 20 1 12.3155 -4.6973 2.4104 21 1 14.4614 -4.4741 3.5181 22 1 12.4153 -4.0022 4.7312 23 6 9.8966 0.3429 -1.2062 24 6 8.5507 0.6521 -1.2018 25 6 3.4742 -1.1991 -0.0026 26 6 4.1679 -2.5370 -0.0044 27 7 2.1570 -1.1471 -0.0020 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6472 2.1376 0.0004 32 1 4.1316 2.1207 -0.0001 33 1 6.0738 -0.9522 -0.0039 34 1 6.1707 1.7272 -0.8914 35 1 6.1721 1.7255 0.8885 36 1 8.0264 0.7819 2.1297 37 1 10.4224 0.2199 2.1341 38 1 13.0574 0.6693 -1.5887 39 1 13.4627 -1.0061 -1.1447 40 1 11.9601 -0.6596 -2.0339 41 1 13.6944 -0.0056 1.1325 42 1 12.1927 0.3401 2.0232 43 1 14.2475 -1.5340 4.4371 44 1 10.4209 0.2233 -2.1428 45 1 8.0224 0.7747 -2.1358 46 1 4.3344 -2.8585 -1.0325 47 1 5.1256 -2.4503 0.5088 48 1 3.5455 -3.2697 0.5092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119055400.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:11 Heat of formation + Delta-G solvation = 60.530995 kcal Electronic energy + Delta-G solvation = -26125.887218 eV Core-core repulsion = 22566.114981 eV Total energy + Delta-G solvation = -3559.772237 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.46350 -39.19094 -36.83690 -35.40829 -33.40840 -32.81769 -31.80009 -30.61033 -29.93044 -28.86764 -27.91316 -26.67432 -25.35194 -24.34428 -22.78919 -21.95881 -21.64854 -21.26835 -19.76990 -17.78726 -16.78528 -16.64488 -16.46057 -15.48603 -15.23350 -14.94341 -14.82672 -14.48454 -14.37866 -13.87757 -13.83002 -13.63694 -13.55888 -13.29676 -13.04186 -12.93592 -12.68797 -12.36491 -12.24476 -12.21057 -12.00249 -11.95497 -11.81553 -11.51840 -11.34783 -11.05926 -10.90591 -10.78586 -10.47338 -10.31674 -9.99795 -9.88144 -9.49135 -9.44016 -8.99254 -8.58928 -8.45241 -7.41338 -6.62383 -6.11990 -4.25871 1.18031 1.42095 1.93673 1.95092 3.20043 3.28660 3.32814 3.48997 3.77767 4.01497 4.27484 4.33331 4.42672 4.70058 4.72755 4.91719 5.05535 5.13700 5.17098 5.25003 5.41332 5.42109 5.45754 5.47885 5.49865 5.53173 5.57435 5.61281 5.70327 5.81865 5.88142 5.96419 5.99787 6.04695 6.14320 6.19014 6.24404 6.28721 6.47366 6.57344 6.78102 6.86758 7.03213 7.10350 7.17190 7.23834 7.42614 7.64727 7.72617 8.05279 8.10456 8.13149 8.33480 8.82925 9.41414 10.87649 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.015527 B = 0.002424 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.854938 B =11550.695016 C =12578.260994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.055 3.945 3 C -0.125 4.125 4 C -0.158 4.158 5 C 0.172 3.828 6 N -0.730 5.730 7 C 0.180 3.820 8 C -0.202 4.202 9 C -0.052 4.052 10 C -0.189 4.189 11 C 0.249 3.751 12 N -0.611 5.611 13 C 0.096 3.904 14 C 0.247 3.753 15 C -0.533 4.533 16 H 0.060 0.940 17 C 0.062 3.938 18 N -0.894 5.894 19 Si 0.896 3.104 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.282 1.282 23 C -0.224 4.224 24 C -0.052 4.052 25 C 0.057 3.943 26 C -0.097 4.097 27 N -0.447 5.447 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.404 0.596 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.112 0.888 37 H 0.134 0.866 38 H 0.038 0.962 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.032 0.968 42 H 0.037 0.963 43 H 0.264 0.736 44 H 0.116 0.884 45 H 0.110 0.890 46 H 0.072 0.928 47 H 0.068 0.932 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.300 5.461 -8.877 21.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 C -0.146 4.146 4 C -0.189 4.189 5 C 0.065 3.935 6 N -0.360 5.360 7 C 0.057 3.943 8 C -0.205 4.205 9 C -0.072 4.072 10 C -0.212 4.212 11 C 0.141 3.859 12 N -0.315 5.315 13 C -0.048 4.048 14 C 0.127 3.873 15 C -0.571 4.571 16 H 0.078 0.922 17 C -0.141 4.141 18 N -0.532 5.532 19 Si 0.724 3.276 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.208 1.208 23 C -0.247 4.247 24 C -0.071 4.071 25 C -0.088 4.088 26 C -0.154 4.154 27 N -0.156 5.156 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.241 0.759 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.130 0.870 37 H 0.152 0.848 38 H 0.056 0.944 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.133 0.867 45 H 0.128 0.872 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.276 4.846 -8.701 20.814 hybrid contribution 0.885 -0.456 0.426 1.083 sum -17.391 4.391 -8.275 19.753 Atomic orbital electron populations 1.20521 0.89409 1.02659 1.02302 1.20856 0.96528 0.88172 1.02863 1.21660 0.93981 0.98872 1.00058 1.21050 0.94493 0.96594 1.06749 1.18707 0.85166 0.94348 0.95315 1.45153 1.01332 1.09225 1.80297 1.20034 0.87623 0.85997 1.00628 1.19203 0.94101 1.13546 0.93683 1.20704 0.93721 0.96140 0.96630 1.20905 0.94587 1.07882 0.97819 1.18025 0.84509 0.89910 0.93480 1.47188 1.05581 1.71286 1.07491 1.21514 0.96993 1.00099 0.86183 1.19338 0.91787 0.96830 0.79333 1.21583 1.34448 0.94418 1.06695 0.92188 1.24971 0.94959 0.97903 0.96255 1.69934 1.34995 1.33960 1.14354 0.86459 0.77836 0.84631 0.78667 1.19708 1.20890 1.20796 1.20576 0.95108 1.12611 0.96424 1.20551 0.93501 0.96582 0.96514 1.20726 0.89158 0.94155 1.04741 1.20541 0.99449 0.92810 1.02642 1.67108 1.08462 1.29563 1.10511 0.91347 0.91419 0.91165 0.85340 0.85038 0.75888 0.92281 0.92191 0.86956 0.84832 0.94397 0.91271 0.92581 0.95047 0.94539 0.92616 0.86656 0.87234 0.90934 0.91281 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 10.16 36.00 0.37 -0.39 16 2 C 0.06 0.63 6.78 -82.57 -0.56 0.07 16 3 C -0.13 -1.29 9.73 -39.47 -0.38 -1.67 16 4 C -0.16 -1.74 9.42 -39.08 -0.37 -2.11 16 5 C 0.17 2.08 6.65 -83.63 -0.56 1.52 16 6 N -0.73 -8.43 5.63 -59.70 -0.34 -8.76 16 7 C 0.18 2.04 5.07 -5.19 -0.03 2.02 16 8 C -0.20 -2.78 5.25 -104.59 -0.55 -3.33 16 9 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16 10 C -0.19 -3.57 9.21 -39.38 -0.36 -3.94 16 11 C 0.25 4.72 6.55 -83.79 -0.55 4.17 16 12 N -0.61 -12.42 2.99 -181.00 -0.54 -12.97 16 13 C 0.10 1.60 10.19 59.85 0.61 2.20 16 14 C 0.25 5.96 4.91 -5.19 -0.03 5.93 16 15 C -0.53 -14.08 9.39 -34.43 -0.32 -14.41 16 16 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -25.05 13.29 55.43 0.74 -24.31 16 19 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 23 C -0.22 -3.59 9.21 -39.38 -0.36 -3.95 16 24 C -0.05 -0.73 9.69 -39.62 -0.38 -1.12 16 25 C 0.06 0.72 6.80 -82.36 -0.56 0.16 16 26 C -0.10 -1.03 9.74 36.00 0.35 -0.68 16 27 N -0.45 -5.93 10.18 -5.58 -0.06 -5.99 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.13 1.23 6.89 -52.49 -0.36 0.87 16 33 H 0.40 4.70 6.48 -40.82 -0.26 4.44 16 34 H 0.06 0.62 7.93 -51.93 -0.41 0.20 16 35 H 0.06 0.65 7.93 -51.93 -0.41 0.24 16 36 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 37 H 0.13 2.82 6.14 -52.49 -0.32 2.50 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 40 H 0.06 0.82 6.20 -51.93 -0.32 0.49 16 41 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 42 H 0.04 0.93 6.20 -51.93 -0.32 0.61 16 43 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.12 1.67 6.14 -52.49 -0.32 1.35 16 45 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.07 0.69 6.54 -51.93 -0.34 0.35 16 48 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 392.51 15.07 5.92 5.92 Total: -1.00 -29.13 392.51 -10.73 -39.86 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -7.26 Total: 5.55 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -4.16 Total: -15.15 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -0.20 Total: -52.03 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.13 -10.73 -39.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119055400.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.396 kcal (2) G-P(sol) polarization free energy of solvation -29.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds