Wall clock time and date at job start Tue Mar 31 2020 16:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38278 * 119.53368 * 2 1 4 4 C 1.38501 * 119.24227 * 180.02562 * 3 2 1 5 5 C 1.39312 * 118.35470 * 0.02562 * 4 3 2 6 6 N 1.39710 * 120.48734 * 179.97438 * 5 4 3 7 7 C 1.46496 * 120.00256 * 0.03095 * 6 5 4 8 8 C 1.50702 * 109.47151 * 179.97438 * 7 6 5 9 9 C 1.38283 * 119.92231 * 269.72595 * 8 7 6 10 10 C 1.38112 * 120.06924 * 179.72592 * 9 8 7 11 11 C 1.38907 * 119.92442 * 0.54375 * 10 9 8 12 12 N 1.39674 * 120.07359 * 179.74586 * 11 10 9 13 13 C 1.46505 * 120.00201 * 179.97438 * 12 11 10 14 14 C 1.46498 * 120.00101 * 359.97438 * 12 11 10 15 15 C 1.50709 * 109.47033 * 89.99700 * 14 12 11 16 16 H 1.07992 * 119.99831 * 0.02562 * 15 14 12 17 17 C 1.37884 * 119.99890 * 180.02562 * 15 14 12 18 18 N 1.31512 * 119.99851 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99881 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47271 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47261 * 119.99529 * 19 17 15 22 22 H 1.48502 * 109.47151 * 239.99757 * 19 17 15 23 23 C 1.38917 * 119.85245 * 359.73046 * 11 10 9 24 24 C 1.38096 * 119.92232 * 359.97438 * 23 11 10 25 25 C 1.38885 * 119.01909 * 0.02562 * 5 4 3 26 26 C 1.50697 * 119.67468 * 179.97438 * 25 5 4 27 27 N 1.31824 * 120.65642 * 359.96959 * 25 5 4 28 28 H 1.08998 * 109.46851 * 269.97199 * 1 2 3 29 29 H 1.08997 * 109.47584 * 29.97162 * 1 2 3 30 30 H 1.09003 * 109.47274 * 149.97705 * 1 2 3 31 31 H 1.07996 * 120.38052 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.82126 * 180.02562 * 4 3 2 33 33 H 0.97003 * 119.99729 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.46507 * 299.99748 * 7 6 5 35 35 H 1.08993 * 109.47099 * 59.99343 * 7 6 5 36 36 H 1.07997 * 119.96350 * 359.97438 * 9 8 7 37 37 H 1.07996 * 120.03365 * 180.27343 * 10 9 8 38 38 H 1.08994 * 109.46619 * 90.00099 * 13 12 11 39 39 H 1.09000 * 109.47360 * 210.00450 * 13 12 11 40 40 H 1.09002 * 109.46988 * 330.00464 * 13 12 11 41 41 H 1.08993 * 109.47692 * 209.99506 * 14 12 11 42 42 H 1.08999 * 109.47188 * 329.99898 * 14 12 11 43 43 H 0.97002 * 119.99963 * 180.02562 * 18 17 15 44 44 H 1.08001 * 120.03524 * 179.97438 * 23 11 10 45 45 H 1.08002 * 119.96002 * 179.97438 * 24 23 11 46 46 H 1.08999 * 109.46990 * 269.97594 * 26 25 5 47 47 H 1.09001 * 109.46888 * 29.97650 * 26 25 5 48 48 H 1.08999 * 109.47328 * 149.97663 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1886 1.2031 0.0000 4 6 3.5736 1.1961 -0.0005 5 6 4.2289 -0.0333 -0.0016 6 7 5.6248 -0.0924 -0.0027 7 6 6.4103 1.1442 -0.0021 8 6 7.8790 0.8063 -0.0029 9 6 8.5530 0.6564 1.1952 10 6 9.8976 0.3412 1.1980 11 6 10.5755 0.1860 -0.0044 12 7 11.9366 -0.1275 -0.0052 13 6 12.6499 -0.2915 -1.2743 14 6 12.6510 -0.2925 1.2631 15 6 12.5770 -1.7337 1.6976 16 1 12.0508 -2.4546 1.0896 17 6 13.1811 -2.1318 2.8714 18 7 13.8222 -1.2539 3.6115 19 14 13.0887 -3.9179 3.4103 20 1 12.3155 -4.6973 2.4104 21 1 14.4614 -4.4741 3.5181 22 1 12.4153 -4.0022 4.7312 23 6 9.8966 0.3429 -1.2062 24 6 8.5507 0.6521 -1.2018 25 6 3.4742 -1.1991 -0.0026 26 6 4.1679 -2.5370 -0.0044 27 7 2.1570 -1.1471 -0.0020 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6472 2.1376 0.0004 32 1 4.1316 2.1207 -0.0001 33 1 6.0738 -0.9522 -0.0039 34 1 6.1707 1.7272 -0.8914 35 1 6.1721 1.7255 0.8885 36 1 8.0264 0.7819 2.1297 37 1 10.4224 0.2199 2.1341 38 1 13.0574 0.6693 -1.5887 39 1 13.4627 -1.0061 -1.1447 40 1 11.9601 -0.6596 -2.0339 41 1 13.6944 -0.0056 1.1325 42 1 12.1927 0.3401 2.0232 43 1 14.2475 -1.5340 4.4371 44 1 10.4209 0.2233 -2.1428 45 1 8.0224 0.7747 -2.1358 46 1 4.3344 -2.8585 -1.0325 47 1 5.1256 -2.4503 0.5088 48 1 3.5455 -3.2697 0.5092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119055400.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:10 Heat of formation + Delta-G solvation = 45.912427 kcal Electronic energy + Delta-G solvation = -26126.521127 eV Core-core repulsion = 22566.114981 eV Total energy + Delta-G solvation = -3560.406146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.30952 -40.48065 -38.00024 -36.61676 -34.81299 -34.19004 -32.78031 -31.94359 -30.96958 -29.79430 -29.59002 -27.75882 -26.50303 -25.67901 -24.15384 -23.08713 -22.86665 -22.13141 -21.08921 -18.73974 -18.65654 -17.98631 -17.51584 -16.95357 -16.34319 -16.01227 -15.87802 -15.77101 -15.47190 -15.34505 -14.89040 -14.83087 -14.44566 -14.37020 -14.17383 -14.06366 -13.80605 -13.75502 -13.28136 -13.18580 -13.16529 -13.04021 -12.88682 -12.75535 -12.68545 -12.61031 -12.57664 -12.27539 -12.02507 -11.75314 -11.52021 -11.21808 -10.66984 -10.55844 -10.28358 -10.25337 -9.72919 -8.39838 -8.26733 -7.87388 -6.39484 0.35642 0.57802 0.65660 0.69617 1.34572 1.36833 1.48312 2.31811 2.52969 2.59598 2.94213 3.04313 3.17193 3.51137 3.89497 3.91465 3.98967 4.01906 4.18838 4.25150 4.38932 4.45353 4.46863 4.61534 4.63623 4.69166 4.69648 4.73580 4.74751 4.83822 4.85287 4.88423 4.91159 4.99102 5.06683 5.14917 5.18543 5.19865 5.27694 5.28024 5.39929 5.54832 5.60011 5.67196 5.79315 5.84812 6.04455 6.13147 6.32660 6.46017 6.74251 6.79830 6.88660 7.26555 7.32393 8.81072 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.015527 B = 0.002424 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.854938 B =11550.695016 C =12578.260994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.040 3.960 3 C -0.125 4.125 4 C -0.162 4.162 5 C 0.161 3.839 6 N -0.731 5.731 7 C 0.186 3.814 8 C -0.182 4.182 9 C -0.053 4.053 10 C -0.218 4.218 11 C 0.220 3.780 12 N -0.629 5.629 13 C 0.096 3.904 14 C 0.264 3.736 15 C -0.539 4.539 16 H 0.050 0.950 17 C 0.012 3.988 18 N -0.926 5.926 19 Si 0.960 3.040 20 H -0.270 1.270 21 H -0.275 1.275 22 H -0.278 1.278 23 C -0.218 4.218 24 C -0.045 4.045 25 C 0.035 3.965 26 C -0.094 4.094 27 N -0.475 5.475 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.159 0.841 32 H 0.150 0.850 33 H 0.402 0.598 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.124 0.876 37 H 0.096 0.904 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.010 0.990 42 H 0.013 0.987 43 H 0.267 0.733 44 H 0.134 0.866 45 H 0.144 0.856 46 H 0.078 0.922 47 H 0.071 0.929 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.703 6.031 -10.548 24.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 C -0.145 4.145 4 C -0.193 4.193 5 C 0.054 3.946 6 N -0.361 5.361 7 C 0.063 3.937 8 C -0.185 4.185 9 C -0.072 4.072 10 C -0.241 4.241 11 C 0.114 3.886 12 N -0.335 5.335 13 C -0.047 4.047 14 C 0.143 3.857 15 C -0.578 4.578 16 H 0.068 0.932 17 C -0.187 4.187 18 N -0.566 5.566 19 Si 0.786 3.214 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.204 1.204 23 C -0.241 4.241 24 C -0.064 4.064 25 C -0.109 4.109 26 C -0.151 4.151 27 N -0.185 5.185 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.176 0.824 32 H 0.168 0.832 33 H 0.239 0.761 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.142 0.858 37 H 0.114 0.886 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.028 0.972 42 H 0.031 0.969 43 H 0.076 0.924 44 H 0.152 0.848 45 H 0.162 0.838 46 H 0.096 0.904 47 H 0.090 0.910 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.711 5.424 -10.399 23.801 hybrid contribution 1.449 -0.543 0.912 1.796 sum -19.261 4.882 -9.487 22.019 Atomic orbital electron populations 1.20590 0.87540 1.03544 1.03007 1.21450 0.98027 0.88267 1.02262 1.22005 0.93965 0.99697 0.98792 1.21369 0.95066 0.96838 1.05999 1.18781 0.85174 0.94711 0.95918 1.45029 1.01236 1.09090 1.80764 1.20039 0.85537 0.86119 1.02039 1.19452 0.95435 1.10888 0.92754 1.20840 0.92483 0.95612 0.98260 1.20784 0.96075 1.10548 0.96664 1.18297 0.84077 0.91565 0.94651 1.47017 1.06405 1.73136 1.06989 1.21635 0.97021 1.00829 0.85196 1.18807 0.90706 0.95190 0.81025 1.21782 1.33953 0.95321 1.06720 0.93212 1.25772 0.94658 1.01937 0.96351 1.70037 1.35870 1.35838 1.14818 0.85466 0.78064 0.79767 0.78145 1.19431 1.20050 1.20395 1.20814 0.95911 1.11566 0.95819 1.20933 0.92737 0.94816 0.97934 1.20990 0.89376 0.95051 1.05464 1.20532 0.99353 0.92260 1.02994 1.67136 1.08924 1.30842 1.11590 0.90646 0.89078 0.91762 0.82366 0.83229 0.76115 0.90280 0.91423 0.85847 0.88578 0.92771 0.92504 0.90173 0.97203 0.96948 0.92399 0.84788 0.83847 0.90359 0.90985 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.29 10.16 71.23 0.72 -0.56 16 2 C 0.04 0.83 6.78 42.56 0.29 1.12 16 3 C -0.12 -2.18 9.73 22.34 0.22 -1.97 16 4 C -0.16 -3.08 9.42 22.59 0.21 -2.86 16 5 C 0.16 3.55 6.65 38.30 0.25 3.81 16 6 N -0.73 -15.04 5.63 -342.79 -1.93 -16.96 16 7 C 0.19 3.56 5.07 85.63 0.43 3.99 16 8 C -0.18 -4.55 5.25 -19.84 -0.10 -4.65 16 9 C -0.05 -1.62 9.69 22.25 0.22 -1.41 16 10 C -0.22 -8.54 9.21 22.40 0.21 -8.34 16 11 C 0.22 8.41 6.55 38.21 0.25 8.66 16 12 N -0.63 -26.33 2.99 -726.55 -2.17 -28.51 16 13 C 0.10 3.17 10.19 127.77 1.30 4.47 16 14 C 0.26 13.53 4.91 85.64 0.42 13.95 16 15 C -0.54 -29.65 9.39 25.60 0.24 -29.41 16 16 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 17 C 0.01 0.67 5.46 84.66 0.46 1.13 16 18 N -0.93 -53.65 13.29 21.45 0.28 -53.37 16 19 Si 0.96 43.58 29.54 68.60 2.03 45.60 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 21 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 C -0.22 -6.54 9.21 22.40 0.21 -6.34 16 24 C -0.05 -1.12 9.69 22.25 0.22 -0.90 16 25 C 0.03 0.84 6.80 42.71 0.29 1.13 16 26 C -0.09 -1.94 9.74 71.24 0.69 -1.24 16 27 N -0.47 -12.14 10.18 -171.56 -1.75 -13.89 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 0.85 8.08 -2.39 -0.02 0.83 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 32 H 0.15 2.20 6.89 -2.91 -0.02 2.18 16 33 H 0.40 8.57 6.48 -92.71 -0.60 7.97 16 34 H 0.08 1.27 7.93 -2.39 -0.02 1.25 16 35 H 0.07 1.24 7.93 -2.39 -0.02 1.22 16 36 H 0.12 3.43 8.06 -2.91 -0.02 3.41 16 37 H 0.10 4.43 6.14 -2.91 -0.02 4.41 16 38 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.06 1.97 8.07 -2.39 -0.02 1.95 16 40 H 0.08 2.20 6.20 -2.39 -0.01 2.19 16 41 H 0.01 0.54 8.07 -2.39 -0.02 0.52 16 42 H 0.01 0.69 6.20 -2.39 -0.01 0.68 16 43 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 44 H 0.13 3.46 6.14 -2.91 -0.02 3.45 16 45 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 46 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.07 1.39 6.54 -2.39 -0.02 1.38 16 48 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -65.50 392.51 3.36 -62.14 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.36 Total: 24.39 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 6.53 Total: -19.41 kcal Atomic # 7 Polarization: -107.17 SS G_CDS: -5.56 Total: -112.73 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -65.50 3.36 -62.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119055400.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.055 kcal (2) G-P(sol) polarization free energy of solvation -65.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds