Wall clock time and date at job start Tue Mar 31 2020 14:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42912 * 1 3 3 C 1.42899 * 113.99947 * 2 1 4 4 C 1.50698 * 109.46782 * 179.97438 * 3 2 1 5 5 C 1.38240 * 120.00018 * 89.99984 * 4 3 2 6 6 C 1.38232 * 119.99531 * 179.97438 * 5 4 3 7 7 C 1.38228 * 120.00650 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.00441 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.46749 * 90.00073 * 8 7 6 10 10 C 1.46908 * 110.99611 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.46973 * 35.00427 * 10 9 8 12 12 C 1.52996 * 109.46833 * 155.00030 * 10 9 8 13 13 C 1.50702 * 109.47159 * 294.99820 * 12 10 9 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 10 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 C 1.50695 * 109.47079 * 275.00057 * 10 9 8 22 22 C 1.38233 * 120.00093 * 319.72855 * 21 10 9 23 23 C 1.38241 * 120.00133 * 179.79073 * 22 21 10 24 24 C 1.38229 * 119.99727 * 0.43877 * 23 22 21 25 25 C 1.38236 * 119.99976 * 359.81143 * 24 23 22 26 26 C 1.38231 * 120.00171 * 359.97438 * 25 24 23 27 27 C 1.38238 * 119.99984 * 0.25359 * 7 6 5 28 28 C 1.38236 * 119.99987 * 269.97745 * 4 3 2 29 29 H 1.09000 * 109.47079 * 300.00134 * 1 2 3 30 30 H 1.09001 * 109.46715 * 60.00027 * 1 2 3 31 31 H 1.08993 * 109.46831 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46921 * 59.99746 * 3 2 1 33 33 H 1.09001 * 109.46985 * 299.99826 * 3 2 1 34 34 H 1.07995 * 119.99953 * 359.97438 * 5 4 3 35 35 H 1.08007 * 119.99513 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.46709 * 330.00202 * 8 7 6 37 37 H 1.08996 * 109.47338 * 210.00215 * 8 7 6 38 38 H 1.00896 * 110.99985 * 303.95743 * 9 8 7 39 39 H 1.09004 * 109.47066 * 175.00023 * 12 10 9 40 40 H 1.08994 * 109.47405 * 54.99853 * 12 10 9 41 41 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 42 42 H 1.08002 * 120.00198 * 359.97438 * 22 21 10 43 43 H 1.07998 * 119.99639 * 180.27390 * 23 22 21 44 44 H 1.07997 * 119.99947 * 179.83467 * 24 23 22 45 45 H 1.08002 * 120.00040 * 179.97438 * 25 24 23 46 46 H 1.08003 * 120.00083 * 180.02562 * 26 25 24 47 47 H 1.07992 * 120.00305 * 179.72321 * 27 7 6 48 48 H 1.08007 * 119.99858 * 0.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.2021 1.1316 -1.1963 6 6 5.5802 1.0229 -1.1956 7 6 6.2687 0.9685 0.0018 8 6 7.7710 0.8494 0.0025 9 7 8.3685 2.1914 0.0025 10 6 9.8356 2.1145 0.0026 11 1 10.1543 1.2548 -0.5869 12 6 10.4133 3.3933 -0.6070 13 6 10.0187 3.4805 -2.0588 14 1 9.4158 2.7019 -2.5023 15 6 10.4222 4.5575 -2.8194 16 7 11.1561 5.5058 -2.2792 17 14 9.9267 4.6694 -4.6169 18 1 8.6337 5.3910 -4.7300 19 1 10.9717 5.4047 -5.3736 20 1 9.7807 3.3016 -5.1763 21 6 10.3306 1.9645 1.4180 22 6 9.7367 2.6841 2.4379 23 6 10.1880 2.5433 3.7370 24 6 11.2391 1.6896 4.0147 25 6 11.8365 0.9739 2.9940 26 6 11.3823 1.1114 1.6957 27 6 5.5788 1.0175 1.1987 28 6 4.2012 1.1325 1.1981 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.6642 1.1736 -2.1318 35 1 6.1189 0.9804 -2.1307 36 1 8.0930 0.3083 -0.8873 37 1 8.0923 0.3086 0.8927 38 1 8.0353 2.7356 -0.7790 39 1 11.5002 3.3754 -0.5263 40 1 10.0235 4.2592 -0.0719 41 1 11.4403 6.2633 -2.8144 42 1 8.9181 3.3542 2.2203 43 1 9.7210 3.1022 4.5344 44 1 11.5935 1.5816 5.0291 45 1 12.6580 0.3072 3.2109 46 1 11.8487 0.5519 0.8983 47 1 6.1163 0.9705 2.1342 48 1 3.6624 1.1753 2.1332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130454643.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:19 Heat of formation + Delta-G solvation = -6.182860 kcal Electronic energy + Delta-G solvation = -26414.854379 eV Core-core repulsion = 22819.896461 eV Total energy + Delta-G solvation = -3594.957918 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 4.01 seconds Orbital eigenvalues (eV) -39.56460 -38.89093 -37.78401 -36.03748 -33.35610 -32.28256 -30.81321 -30.53810 -30.29706 -28.84892 -27.42443 -25.92541 -24.56495 -23.16161 -22.60886 -22.08104 -21.84559 -20.53876 -19.54689 -16.70155 -16.61874 -16.46029 -16.18486 -16.07168 -15.49195 -15.07826 -14.86971 -14.66539 -14.52433 -14.31033 -13.94796 -13.53230 -13.28805 -13.11314 -12.84377 -12.58530 -12.47333 -12.39496 -12.15464 -12.04762 -11.86744 -11.51981 -11.28553 -11.07530 -10.99300 -10.84096 -10.64532 -10.57876 -10.45013 -10.31099 -9.93553 -9.61746 -9.19993 -8.77145 -8.60209 -8.45114 -8.39910 -8.05584 -7.76687 -6.06917 -4.11153 1.33518 1.56147 1.87343 1.92708 3.27062 3.34257 3.35874 3.51602 4.07657 4.30562 4.40514 4.75483 4.78368 4.91883 5.04513 5.07011 5.08799 5.15928 5.20531 5.24619 5.31288 5.34698 5.37936 5.41540 5.50880 5.61689 5.64261 5.70622 5.85667 5.93562 6.03965 6.08761 6.15609 6.20330 6.29338 6.44349 6.51970 6.55912 6.64274 6.71885 6.83921 6.89515 6.92649 6.99112 7.11081 7.20794 7.43712 7.53642 7.58087 7.90588 7.96085 8.17668 8.28811 8.94252 9.53338 11.03598 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.008012 B = 0.003617 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3493.735978 B = 7740.247987 C =10680.838525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.105 3.895 4 C -0.102 4.102 5 C -0.099 4.099 6 C -0.115 4.115 7 C -0.061 4.061 8 C 0.095 3.905 9 N -0.673 5.673 10 C 0.127 3.873 11 H 0.041 0.959 12 C 0.029 3.971 13 C -0.526 4.526 14 H 0.053 0.947 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.890 3.110 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.053 4.053 22 C -0.087 4.087 23 C -0.131 4.131 24 C -0.138 4.138 25 C -0.128 4.128 26 C -0.124 4.124 27 C -0.101 4.101 28 C -0.101 4.101 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.034 0.966 37 H 0.073 0.927 38 H 0.359 0.641 39 H 0.024 0.976 40 H 0.028 0.972 41 H 0.262 0.738 42 H 0.128 0.872 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.115 0.885 47 H 0.124 0.876 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.962 -9.716 8.275 18.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.029 3.971 4 C -0.102 4.102 5 C -0.117 4.117 6 C -0.133 4.133 7 C -0.061 4.061 8 C -0.034 4.034 9 N -0.307 5.307 10 C 0.018 3.982 11 H 0.059 0.941 12 C -0.008 4.008 13 C -0.564 4.564 14 H 0.071 0.929 15 C -0.139 4.139 16 N -0.527 5.527 17 Si 0.718 3.282 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.054 4.054 22 C -0.105 4.105 23 C -0.149 4.149 24 C -0.156 4.156 25 C -0.146 4.146 26 C -0.142 4.142 27 C -0.120 4.120 28 C -0.119 4.119 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.053 0.947 37 H 0.091 0.909 38 H 0.181 0.819 39 H 0.042 0.958 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.146 0.854 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.133 0.867 47 H 0.142 0.858 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.796 -9.625 8.893 19.028 hybrid contribution -0.190 0.167 -1.925 1.942 sum -13.986 -9.457 6.968 18.265 Atomic orbital electron populations 1.22748 0.81259 1.02714 0.99927 1.87991 1.19366 1.27758 1.95384 1.21341 0.90278 0.84805 1.00703 1.19463 0.93494 1.03492 0.93786 1.20943 0.94210 0.99340 0.97196 1.21103 0.94004 1.00228 0.98012 1.19959 0.95711 0.97485 0.92969 1.20928 0.89247 0.92512 1.00714 1.60512 1.06609 1.12151 1.51402 1.20663 0.86690 1.00873 0.90023 0.94065 1.19249 0.96291 0.90460 0.94819 1.21113 1.33497 1.06522 0.95296 0.92899 1.24972 0.94974 0.95669 0.98319 1.69966 1.35929 1.10407 1.36356 0.86633 0.78318 0.78125 0.85164 1.20562 1.21213 1.19954 1.20201 0.94552 0.94389 0.96274 1.21053 0.99413 0.98520 0.91563 1.21125 0.97590 0.99285 0.96874 1.20971 0.97647 0.98456 0.98519 1.20971 1.00120 1.00361 0.93152 1.21045 0.97463 0.99390 0.96335 1.21001 0.93572 0.99474 0.97934 1.20964 0.94315 0.99577 0.97091 0.94104 0.94099 0.89668 0.92567 0.92551 0.86316 0.85912 0.94743 0.90909 0.81870 0.95820 0.95317 0.92866 0.85385 0.86913 0.87128 0.86963 0.86700 0.85846 0.86363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.40 10.69 -35.23 -0.38 -4.77 16 3 C 0.10 1.09 6.06 36.00 0.22 1.31 16 4 C -0.10 -1.29 5.51 -104.62 -0.58 -1.86 16 5 C -0.10 -1.29 9.70 -39.58 -0.38 -1.67 16 6 C -0.11 -1.63 9.70 -39.59 -0.38 -2.01 16 7 C -0.06 -0.89 5.39 -104.62 -0.56 -1.46 16 8 C 0.10 1.49 5.61 -4.97 -0.03 1.46 16 9 N -0.67 -12.29 5.55 -109.22 -0.61 -12.89 16 10 C 0.13 2.54 2.19 -68.86 -0.15 2.39 16 11 H 0.04 0.84 7.66 -51.93 -0.40 0.44 16 12 C 0.03 0.72 4.55 -27.88 -0.13 0.59 16 13 C -0.53 -13.94 8.12 -34.44 -0.28 -14.22 16 14 H 0.05 1.35 7.49 -52.49 -0.39 0.96 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 17 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 21 C -0.05 -0.98 4.71 -104.63 -0.49 -1.47 16 22 C -0.09 -1.52 9.32 -39.58 -0.37 -1.89 16 23 C -0.13 -1.99 10.05 -39.58 -0.40 -2.38 16 24 C -0.14 -1.97 10.05 -39.59 -0.40 -2.37 16 25 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 26 C -0.12 -2.08 9.67 -39.59 -0.38 -2.47 16 27 C -0.10 -1.38 9.70 -39.58 -0.38 -1.76 16 28 C -0.10 -1.28 9.70 -39.58 -0.38 -1.66 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 33 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 36 H 0.03 0.55 8.00 -51.93 -0.42 0.13 16 37 H 0.07 1.12 7.94 -51.93 -0.41 0.71 16 38 H 0.36 7.20 7.20 -39.29 -0.28 6.91 16 39 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 42 H 0.13 2.30 7.73 -52.49 -0.41 1.89 16 43 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 44 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 45 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 46 H 0.11 1.82 8.04 -52.48 -0.42 1.39 16 47 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 48 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 402.57 15.07 6.07 6.07 Total: -1.00 -29.77 402.57 -11.44 -41.21 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -7.78 Total: 8.45 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: -4.47 Total: -28.80 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.13 Total: -38.11 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: -0.38 Total: -4.77 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -29.77 -11.44 -41.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130454643.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.028 kcal (2) G-P(sol) polarization free energy of solvation -29.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.01 seconds