Wall clock time and date at job start Tue Mar 31 2020 14:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42912 * 1 3 3 C 1.42899 * 113.99947 * 2 1 4 4 C 1.50698 * 109.46782 * 179.97438 * 3 2 1 5 5 C 1.38240 * 120.00018 * 89.99984 * 4 3 2 6 6 C 1.38232 * 119.99531 * 179.97438 * 5 4 3 7 7 C 1.38228 * 120.00650 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.00441 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.46749 * 90.00073 * 8 7 6 10 10 C 1.46908 * 110.99611 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.46973 * 35.00427 * 10 9 8 12 12 C 1.52996 * 109.46833 * 155.00030 * 10 9 8 13 13 C 1.50702 * 109.47159 * 294.99820 * 12 10 9 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 10 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 C 1.50695 * 109.47079 * 275.00057 * 10 9 8 22 22 C 1.38233 * 120.00093 * 319.72855 * 21 10 9 23 23 C 1.38241 * 120.00133 * 179.79073 * 22 21 10 24 24 C 1.38229 * 119.99727 * 0.43877 * 23 22 21 25 25 C 1.38236 * 119.99976 * 359.81143 * 24 23 22 26 26 C 1.38231 * 120.00171 * 359.97438 * 25 24 23 27 27 C 1.38238 * 119.99984 * 0.25359 * 7 6 5 28 28 C 1.38236 * 119.99987 * 269.97745 * 4 3 2 29 29 H 1.09000 * 109.47079 * 300.00134 * 1 2 3 30 30 H 1.09001 * 109.46715 * 60.00027 * 1 2 3 31 31 H 1.08993 * 109.46831 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46921 * 59.99746 * 3 2 1 33 33 H 1.09001 * 109.46985 * 299.99826 * 3 2 1 34 34 H 1.07995 * 119.99953 * 359.97438 * 5 4 3 35 35 H 1.08007 * 119.99513 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.46709 * 330.00202 * 8 7 6 37 37 H 1.08996 * 109.47338 * 210.00215 * 8 7 6 38 38 H 1.00896 * 110.99985 * 303.95743 * 9 8 7 39 39 H 1.09004 * 109.47066 * 175.00023 * 12 10 9 40 40 H 1.08994 * 109.47405 * 54.99853 * 12 10 9 41 41 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 42 42 H 1.08002 * 120.00198 * 359.97438 * 22 21 10 43 43 H 1.07998 * 119.99639 * 180.27390 * 23 22 21 44 44 H 1.07997 * 119.99947 * 179.83467 * 24 23 22 45 45 H 1.08002 * 120.00040 * 179.97438 * 25 24 23 46 46 H 1.08003 * 120.00083 * 180.02562 * 26 25 24 47 47 H 1.07992 * 120.00305 * 179.72321 * 27 7 6 48 48 H 1.08007 * 119.99858 * 0.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.2021 1.1316 -1.1963 6 6 5.5802 1.0229 -1.1956 7 6 6.2687 0.9685 0.0018 8 6 7.7710 0.8494 0.0025 9 7 8.3685 2.1914 0.0025 10 6 9.8356 2.1145 0.0026 11 1 10.1543 1.2548 -0.5869 12 6 10.4133 3.3933 -0.6070 13 6 10.0187 3.4805 -2.0588 14 1 9.4158 2.7019 -2.5023 15 6 10.4222 4.5575 -2.8194 16 7 11.1561 5.5058 -2.2792 17 14 9.9267 4.6694 -4.6169 18 1 8.6337 5.3910 -4.7300 19 1 10.9717 5.4047 -5.3736 20 1 9.7807 3.3016 -5.1763 21 6 10.3306 1.9645 1.4180 22 6 9.7367 2.6841 2.4379 23 6 10.1880 2.5433 3.7370 24 6 11.2391 1.6896 4.0147 25 6 11.8365 0.9739 2.9940 26 6 11.3823 1.1114 1.6957 27 6 5.5788 1.0175 1.1987 28 6 4.2012 1.1325 1.1981 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.6642 1.1736 -2.1318 35 1 6.1189 0.9804 -2.1307 36 1 8.0930 0.3083 -0.8873 37 1 8.0923 0.3086 0.8927 38 1 8.0353 2.7356 -0.7790 39 1 11.5002 3.3754 -0.5263 40 1 10.0235 4.2592 -0.0719 41 1 11.4403 6.2633 -2.8144 42 1 8.9181 3.3542 2.2203 43 1 9.7210 3.1022 4.5344 44 1 11.5935 1.5816 5.0291 45 1 12.6580 0.3072 3.2109 46 1 11.8487 0.5519 0.8983 47 1 6.1163 0.9705 2.1342 48 1 3.6624 1.1753 2.1332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130454643.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:15 Heat of formation + Delta-G solvation = -21.049018 kcal Electronic energy + Delta-G solvation = -26415.499024 eV Core-core repulsion = 22819.896461 eV Total energy + Delta-G solvation = -3595.602563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -40.64229 -40.14300 -38.61768 -37.46219 -35.06459 -33.81478 -31.84190 -31.75545 -31.51849 -30.50927 -28.44899 -26.95983 -26.08486 -24.33791 -23.68371 -23.62433 -23.18696 -21.61051 -21.03849 -18.59752 -17.60900 -17.45878 -17.27494 -17.06634 -16.76411 -16.43236 -16.24836 -16.09629 -15.76547 -15.38925 -15.05883 -14.87987 -14.61733 -14.29593 -14.08604 -13.92933 -13.71053 -13.63009 -13.48850 -13.12775 -13.09375 -13.00965 -12.78234 -12.50993 -12.36478 -12.28809 -12.07303 -11.87641 -11.82402 -11.69394 -11.42088 -11.15191 -10.64080 -10.59295 -9.80937 -9.68856 -9.66415 -9.41120 -9.23734 -8.20076 -6.31554 0.29247 0.52330 0.60630 0.66620 1.39699 1.39967 1.50338 2.39228 2.60441 3.03389 3.12019 3.20240 3.55780 3.84815 3.87762 4.02320 4.12580 4.13990 4.15152 4.23405 4.30714 4.42280 4.42470 4.48807 4.53554 4.57366 4.61598 4.64474 4.68625 4.79864 4.82117 4.84215 4.87558 4.90402 5.08095 5.18233 5.22737 5.31496 5.41487 5.45453 5.50767 5.64269 5.68849 5.73957 5.74287 5.80508 5.87847 6.08012 6.16198 6.22168 6.27549 6.36376 6.57581 6.82830 7.37406 8.91232 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.008012 B = 0.003617 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3493.735978 B = 7740.247987 C =10680.838525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.412 6.412 3 C 0.105 3.895 4 C -0.105 4.105 5 C -0.105 4.105 6 C -0.128 4.128 7 C -0.078 4.078 8 C 0.104 3.896 9 N -0.670 5.670 10 C 0.142 3.858 11 H 0.032 0.968 12 C 0.042 3.958 13 C -0.533 4.533 14 H 0.060 0.940 15 C 0.007 3.993 16 N -0.929 5.929 17 Si 0.960 3.040 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.264 1.264 21 C -0.078 4.078 22 C -0.104 4.104 23 C -0.131 4.131 24 C -0.131 4.131 25 C -0.126 4.126 26 C -0.139 4.139 27 C -0.108 4.108 28 C -0.104 4.104 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.135 0.865 35 H 0.121 0.879 36 H 0.030 0.970 37 H 0.075 0.925 38 H 0.347 0.653 39 H -0.009 1.009 40 H -0.002 1.002 41 H 0.263 0.737 42 H 0.113 0.887 43 H 0.139 0.861 44 H 0.147 0.853 45 H 0.143 0.857 46 H 0.117 0.883 47 H 0.129 0.871 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.467 -10.742 9.262 20.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.332 6.332 3 C 0.029 3.971 4 C -0.106 4.106 5 C -0.123 4.123 6 C -0.146 4.146 7 C -0.078 4.078 8 C -0.025 4.025 9 N -0.302 5.302 10 C 0.032 3.968 11 H 0.050 0.950 12 C 0.005 3.995 13 C -0.571 4.571 14 H 0.078 0.922 15 C -0.191 4.191 16 N -0.569 5.569 17 Si 0.785 3.215 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.189 1.189 21 C -0.079 4.079 22 C -0.122 4.122 23 C -0.149 4.149 24 C -0.149 4.149 25 C -0.143 4.143 26 C -0.158 4.158 27 C -0.126 4.126 28 C -0.122 4.122 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.153 0.847 35 H 0.139 0.861 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.167 0.833 39 H 0.009 0.991 40 H 0.016 0.984 41 H 0.072 0.928 42 H 0.131 0.869 43 H 0.156 0.844 44 H 0.165 0.835 45 H 0.161 0.839 46 H 0.135 0.865 47 H 0.147 0.853 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.316 -10.674 9.890 21.127 hybrid contribution 0.245 0.456 -2.136 2.198 sum -15.071 -10.218 7.754 19.791 Atomic orbital electron populations 1.22946 0.79366 1.03794 1.01063 1.87939 1.21484 1.28184 1.95629 1.21379 0.88666 0.84911 1.02106 1.19821 0.95080 1.02163 0.93499 1.21177 0.93791 0.99015 0.98354 1.21201 0.94808 1.00827 0.97811 1.19891 0.94828 0.99249 0.93838 1.20851 0.90228 0.90851 1.00534 1.60530 1.05478 1.13677 1.50510 1.20314 0.87601 0.97640 0.91219 0.94965 1.19002 0.94183 0.91878 0.94451 1.21464 1.32984 1.06540 0.96145 0.92222 1.25871 0.94927 0.95316 1.03029 1.70106 1.37403 1.11179 1.38199 0.85524 0.78016 0.78498 0.79475 1.19743 1.21082 1.18865 1.20098 0.96113 0.96408 0.95297 1.21037 0.99653 0.98768 0.92757 1.21429 0.97750 0.99383 0.96305 1.21415 0.96462 0.96877 1.00123 1.21342 1.00483 1.00363 0.92159 1.21211 0.97245 0.99517 0.97807 1.21130 0.94311 0.99485 0.97710 1.21241 0.93925 0.98782 0.98217 0.92836 0.93062 0.88724 0.90974 0.91364 0.84713 0.86083 0.95166 0.90662 0.83347 0.99114 0.98391 0.92817 0.86864 0.84351 0.83483 0.83914 0.86521 0.85312 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -8.58 10.69 -148.98 -1.59 -10.17 16 3 C 0.11 1.97 6.06 71.24 0.43 2.40 16 4 C -0.11 -2.51 5.51 -19.86 -0.11 -2.62 16 5 C -0.11 -2.67 9.70 22.27 0.22 -2.46 16 6 C -0.13 -3.65 9.70 22.27 0.22 -3.44 16 7 C -0.08 -2.31 5.39 -19.86 -0.11 -2.42 16 8 C 0.10 3.38 5.61 85.56 0.48 3.86 16 9 N -0.67 -25.67 5.55 -499.45 -2.77 -28.44 16 10 C 0.14 5.99 2.19 44.16 0.10 6.09 16 11 H 0.03 1.39 7.66 -2.39 -0.02 1.37 16 12 C 0.04 2.22 4.55 29.85 0.14 2.36 16 13 C -0.53 -29.32 8.12 25.60 0.21 -29.11 16 14 H 0.06 3.13 7.49 -2.91 -0.02 3.11 16 15 C 0.01 0.40 5.46 84.66 0.46 0.86 16 16 N -0.93 -56.18 13.29 21.45 0.28 -55.89 16 17 Si 0.96 43.72 29.54 68.60 2.03 45.74 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 20 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 21 C -0.08 -2.98 4.71 -19.87 -0.09 -3.07 16 22 C -0.10 -3.69 9.32 22.27 0.21 -3.48 16 23 C -0.13 -3.77 10.05 22.27 0.22 -3.54 16 24 C -0.13 -3.36 10.05 22.27 0.22 -3.14 16 25 C -0.13 -3.46 10.05 22.27 0.22 -3.24 16 26 C -0.14 -4.69 9.67 22.27 0.22 -4.48 16 27 C -0.11 -2.90 9.70 22.27 0.22 -2.69 16 28 C -0.10 -2.48 9.70 22.27 0.22 -2.26 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.10 8.08 -2.39 -0.02 1.09 16 33 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 34 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 35 H 0.12 3.38 8.06 -2.91 -0.02 3.36 16 36 H 0.03 1.00 8.00 -2.39 -0.02 0.98 16 37 H 0.07 2.38 7.94 -2.39 -0.02 2.36 16 38 H 0.35 14.61 7.20 -89.70 -0.65 13.97 16 39 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 40 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 41 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 42 H 0.11 4.26 7.73 -2.91 -0.02 4.24 16 43 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 44 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 45 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 46 H 0.12 3.76 8.04 -2.91 -0.02 3.74 16 47 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 48 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -66.35 402.57 2.94 -63.41 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: 0.28 Total: 34.18 kcal Atomic # 6 Polarization: -53.53 SS G_CDS: 4.71 Total: -48.82 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -2.49 Total: -84.34 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -1.59 Total: -10.17 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -66.35 2.94 -63.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130454643.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.364 kcal (2) G-P(sol) polarization free energy of solvation -66.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds