Wall clock time and date at job start Tue Mar 31 2020 16:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38118 * 120.40070 * 2 1 4 4 C 1.39627 * 118.33215 * 179.97438 * 3 2 1 5 5 N 1.38545 * 120.53024 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99849 * 0.02562 * 5 4 3 7 7 H 1.08990 * 109.47400 * 34.99993 * 6 5 4 8 8 C 1.52997 * 109.46833 * 155.00364 * 6 5 4 9 9 C 1.50703 * 109.47134 * 294.99543 * 8 6 5 10 10 H 1.08003 * 119.99961 * 359.97438 * 9 8 6 11 11 C 1.37874 * 120.00012 * 180.02562 * 9 8 6 12 12 N 1.31514 * 120.00403 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99871 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47317 * 59.99777 * 13 11 9 15 15 H 1.48497 * 109.47168 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47287 * 299.99753 * 13 11 9 17 17 C 1.50707 * 109.46902 * 274.99646 * 6 5 4 18 18 C 1.38232 * 119.99934 * 319.73103 * 17 6 5 19 19 C 1.38240 * 119.99614 * 179.80603 * 18 17 6 20 20 C 1.38234 * 119.99975 * 0.40141 * 19 18 17 21 21 C 1.38235 * 120.00170 * 359.85326 * 20 19 18 22 22 C 1.38233 * 119.99687 * 140.00214 * 17 6 5 23 23 N 1.32996 * 118.93706 * 0.25123 * 4 3 2 24 24 C 1.31753 * 120.68606 * 359.48596 * 23 4 3 25 25 C 1.50701 * 119.08222 * 180.26031 * 24 23 4 26 26 C 1.52997 * 109.46666 * 120.25792 * 25 24 23 27 27 C 1.52996 * 109.47195 * 240.25711 * 25 24 23 28 28 N 1.31788 * 121.82813 * 0.53073 * 24 23 4 29 29 H 1.09008 * 109.46724 * 90.00276 * 1 2 3 30 30 H 1.09001 * 109.47325 * 209.99878 * 1 2 3 31 31 H 1.08999 * 109.47230 * 330.00686 * 1 2 3 32 32 H 1.07991 * 120.83555 * 359.97438 * 3 2 1 33 33 H 0.97005 * 119.99890 * 179.97438 * 5 4 3 34 34 H 1.08991 * 109.47642 * 54.99647 * 8 6 5 35 35 H 1.09005 * 109.47281 * 174.99715 * 8 6 5 36 36 H 0.96996 * 119.99885 * 180.02562 * 12 11 9 37 37 H 1.07997 * 120.00425 * 359.97438 * 18 17 6 38 38 H 1.07997 * 119.99792 * 180.23112 * 19 18 17 39 39 H 1.07998 * 119.99749 * 179.83559 * 20 19 18 40 40 H 1.08000 * 120.00135 * 179.97438 * 21 20 19 41 41 H 1.07998 * 119.99885 * 359.97438 * 22 17 6 42 42 H 1.08995 * 109.47048 * 0.26466 * 25 24 23 43 43 H 1.08998 * 109.47195 * 180.02562 * 26 25 24 44 44 H 1.09002 * 109.47495 * 300.00439 * 26 25 24 45 45 H 1.09002 * 109.47122 * 59.99942 * 26 25 24 46 46 H 1.09001 * 109.47020 * 60.00492 * 27 25 24 47 47 H 1.08998 * 109.46815 * 180.02562 * 27 25 24 48 48 H 1.08995 * 109.47286 * 300.00049 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1913 0.0000 4 6 3.6013 1.1409 0.0005 5 7 4.3477 2.3081 0.0000 6 6 3.6735 3.6087 -0.0005 7 1 2.7590 3.5441 0.5889 8 6 4.5995 4.6634 0.6086 9 6 4.8419 4.3407 2.0605 10 1 4.3812 3.4706 2.5046 11 6 5.6510 5.1568 2.8223 12 7 6.2116 6.2166 2.2818 13 14 5.9521 4.7564 4.6219 14 1 6.5868 3.4183 4.7319 15 1 6.8508 5.7801 5.2131 16 1 4.6586 4.7520 5.3512 17 6 3.3324 3.9971 -1.4162 18 6 4.2332 3.7530 -2.4359 19 6 3.9186 4.1056 -3.7350 20 6 2.7068 4.7098 -4.0131 21 6 1.8082 4.9586 -2.9925 22 6 2.1211 4.6024 -1.6940 23 7 4.2024 -0.0455 -0.0041 24 6 3.4955 -1.1574 0.0011 25 6 4.2140 -2.4821 0.0016 26 6 3.8227 -3.2739 1.2509 27 6 3.8236 -3.2745 -1.2476 28 7 2.1777 -1.1432 0.0006 29 1 -0.3633 0.0000 -1.0278 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 1.6863 2.1379 -0.0004 33 1 5.3168 2.2641 0.0008 34 1 5.5490 4.6658 0.0735 35 1 4.1342 5.6458 0.5275 36 1 6.7811 6.7904 2.8177 37 1 5.1815 3.2844 -2.2182 38 1 4.6208 3.9116 -4.5323 39 1 2.4622 4.9877 -5.0276 40 1 0.8616 5.4310 -3.2097 41 1 1.4191 4.7966 -0.8967 42 1 5.2905 -2.3115 0.0020 43 1 4.3426 -4.2319 1.2515 44 1 4.1007 -2.7093 2.1409 45 1 2.7461 -3.4444 1.2505 46 1 4.1024 -2.7103 -2.1376 47 1 4.3429 -4.2328 -1.2469 48 1 2.7471 -3.4451 -1.2479 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164307860.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:30 Heat of formation + Delta-G solvation = 50.505631 kcal Electronic energy + Delta-G solvation = -27464.436866 eV Core-core repulsion = 23904.229897 eV Total energy + Delta-G solvation = -3560.206969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.73528 -39.17948 -36.69187 -35.35771 -33.93571 -32.72823 -31.45087 -30.66535 -29.90912 -28.78440 -27.77657 -27.11047 -25.22411 -23.98429 -22.49443 -22.05371 -21.70386 -20.62690 -19.74107 -17.63502 -16.75774 -16.51471 -16.20913 -15.24716 -14.99448 -14.89474 -14.75476 -14.68709 -14.51379 -14.07709 -13.60064 -13.35434 -13.26856 -13.08473 -12.96800 -12.67859 -12.52679 -12.20808 -12.18048 -12.12072 -11.73366 -11.52429 -11.29180 -11.22533 -11.02915 -10.85875 -10.83478 -10.79755 -10.61403 -10.43751 -10.10276 -9.80007 -9.39654 -9.18028 -8.79624 -8.65146 -8.51070 -8.33597 -7.62129 -6.13878 -4.17877 1.42460 1.63467 1.67940 1.82144 3.26705 3.31495 3.34802 3.48760 4.09301 4.20169 4.23675 4.36256 4.58132 5.00969 5.08323 5.13634 5.16538 5.22193 5.23156 5.24827 5.36915 5.40398 5.48615 5.55803 5.61754 5.66816 5.71964 5.78994 5.80770 5.86046 5.89832 5.92270 5.95309 6.09584 6.11004 6.21048 6.27146 6.28634 6.38119 6.41660 6.67075 6.71488 6.74657 6.93194 7.15514 7.27300 7.39977 7.45997 7.81187 7.82853 8.13070 8.17734 8.73363 8.86999 9.47760 10.96522 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.007702 B = 0.004894 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3634.653511 B = 5720.322177 C = 8084.770904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.195 3.805 3 C -0.297 4.297 4 C 0.451 3.549 5 N -0.676 5.676 6 C 0.190 3.810 7 H 0.082 0.918 8 C 0.025 3.975 9 C -0.523 4.523 10 H 0.057 0.943 11 C 0.063 3.937 12 N -0.891 5.891 13 Si 0.892 3.108 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.082 4.082 18 C -0.101 4.101 19 C -0.123 4.123 20 C -0.132 4.132 21 C -0.122 4.122 22 C -0.114 4.114 23 N -0.586 5.586 24 C 0.365 3.635 25 C -0.024 4.024 26 C -0.138 4.138 27 C -0.137 4.137 28 N -0.568 5.568 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.137 0.863 33 H 0.409 0.591 34 H 0.026 0.974 35 H 0.037 0.963 36 H 0.263 0.737 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.091 0.909 43 H 0.060 0.940 44 H 0.052 0.948 45 H 0.066 0.934 46 H 0.051 0.949 47 H 0.060 0.940 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.783 -11.099 -9.327 16.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.053 3.947 3 C -0.326 4.326 4 C 0.206 3.794 5 N -0.303 5.303 6 C 0.085 3.915 7 H 0.100 0.900 8 C -0.012 4.012 9 C -0.561 4.561 10 H 0.075 0.925 11 C -0.139 4.139 12 N -0.530 5.530 13 Si 0.720 3.280 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.083 4.083 18 C -0.119 4.119 19 C -0.141 4.141 20 C -0.150 4.150 21 C -0.140 4.140 22 C -0.132 4.132 23 N -0.311 5.311 24 C 0.095 3.905 25 C -0.045 4.045 26 C -0.196 4.196 27 C -0.195 4.195 28 N -0.290 5.290 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.155 0.845 33 H 0.246 0.754 34 H 0.044 0.956 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.070 0.930 47 H 0.079 0.921 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.307 -11.523 -9.274 16.964 hybrid contribution 0.313 0.983 0.999 1.437 sum -7.994 -10.539 -8.274 15.603 Atomic orbital electron populations 1.20678 0.88754 1.03372 1.02963 1.21216 0.96712 0.87818 0.88948 1.21922 0.93910 1.00484 1.16244 1.18607 0.88485 0.86634 0.85643 1.44731 1.09086 1.01537 1.74986 1.20378 0.98063 0.82879 0.90184 0.89971 1.19381 0.93827 0.92378 0.95613 1.21049 1.29802 1.10608 0.94633 0.92507 1.24962 0.95587 0.94894 0.98502 1.69939 1.31789 1.14696 1.36535 0.86651 0.78233 0.78124 0.85007 1.20198 1.21212 1.20206 1.20614 0.93832 0.97345 0.96527 1.20941 0.99209 0.99390 0.92377 1.21082 0.96955 0.99516 0.96562 1.21030 0.94661 1.00473 0.98814 1.21036 0.99368 1.00577 0.93016 1.20998 0.96457 0.99195 0.96589 1.67764 1.41455 0.97414 1.24509 1.22586 0.86519 0.92913 0.88496 1.19874 0.99341 0.88441 0.96826 1.21752 1.02442 0.99135 0.96241 1.21746 1.02462 0.99109 0.96149 1.67914 1.09160 1.29711 1.22186 0.90358 0.90464 0.90606 0.84530 0.75367 0.95557 0.94463 0.92730 0.86447 0.86641 0.86726 0.86482 0.86130 0.89059 0.92120 0.92851 0.91542 0.93010 0.92125 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.12 10.21 36.01 0.37 -0.75 16 2 C 0.19 2.99 6.82 -82.33 -0.56 2.43 16 3 C -0.30 -4.96 8.92 -39.11 -0.35 -5.31 16 4 C 0.45 8.31 7.68 -154.77 -1.19 7.12 16 5 N -0.68 -12.60 4.19 -54.91 -0.23 -12.83 16 6 C 0.19 3.58 1.82 -69.08 -0.13 3.45 16 7 H 0.08 1.55 6.37 -51.93 -0.33 1.22 16 8 C 0.03 0.59 4.49 -27.88 -0.13 0.46 16 9 C -0.52 -13.69 8.84 -34.44 -0.30 -14.00 16 10 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -25.43 13.29 55.43 0.74 -24.70 16 13 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 C -0.08 -1.38 4.83 -104.62 -0.51 -1.89 16 18 C -0.10 -1.65 9.32 -39.58 -0.37 -2.02 16 19 C -0.12 -1.76 10.05 -39.58 -0.40 -2.16 16 20 C -0.13 -1.74 10.05 -39.58 -0.40 -2.14 16 21 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 22 C -0.11 -1.72 9.67 -39.58 -0.38 -2.10 16 23 N -0.59 -10.79 10.34 -9.96 -0.10 -10.89 16 24 C 0.36 6.02 6.34 -157.24 -1.00 5.03 16 25 C -0.02 -0.32 3.25 -91.77 -0.30 -0.62 16 26 C -0.14 -1.58 9.09 37.16 0.34 -1.25 16 27 C -0.14 -1.51 9.09 37.16 0.34 -1.17 16 28 N -0.57 -9.16 9.74 -7.07 -0.07 -9.23 16 29 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 32 H 0.14 2.13 6.34 -52.49 -0.33 1.80 16 33 H 0.41 7.87 8.73 -40.82 -0.36 7.51 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.12 1.93 7.73 -52.49 -0.41 1.52 16 38 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 39 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.12 1.64 8.04 -52.49 -0.42 1.22 16 42 H 0.09 1.19 8.09 -51.93 -0.42 0.77 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.78 8.01 -51.93 -0.42 0.37 16 46 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.07 0.76 8.01 -51.93 -0.42 0.34 16 LS Contribution 399.16 15.07 6.02 6.02 Total: -1.00 -29.81 399.16 -11.84 -41.64 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -7.71 Total: 9.13 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -5.45 Total: -15.32 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 0.33 Total: -57.65 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.81 -11.84 -41.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164307860.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.150 kcal (2) G-P(sol) polarization free energy of solvation -29.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds