Wall clock time and date at job start Tue Mar 31 2020 15:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86810 * 119.99585 * 2 1 4 4 H 1.48503 * 109.46523 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47313 * 299.99838 * 3 2 1 6 6 H 1.48500 * 109.46824 * 60.00580 * 3 2 1 7 7 C 1.37872 * 120.00239 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99948 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00253 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.35042 * 125.92700 * 125.00094 * 10 9 7 12 12 C 1.35080 * 107.97818 * 179.97438 * 11 10 9 13 13 C 1.50700 * 126.07655 * 179.97438 * 12 11 10 14 14 N 1.46897 * 109.46997 * 260.02688 * 13 12 11 15 15 C 1.46904 * 110.99679 * 180.02562 * 14 13 12 16 16 C 1.52995 * 109.47223 * 180.02562 * 15 14 13 17 17 C 1.53003 * 109.47289 * 179.97438 * 16 15 14 18 18 C 1.53001 * 117.51964 * 116.28130 * 17 16 15 19 19 C 1.52999 * 60.00190 * 107.47982 * 18 17 16 20 20 C 1.40850 * 107.84895 * 0.22867 * 12 11 10 21 21 C 1.48420 * 126.03890 * 179.77261 * 20 12 11 22 22 C 1.39322 * 120.11708 * 324.72402 * 21 20 12 23 23 C 1.38026 * 119.87573 * 179.71918 * 22 21 20 24 24 C 1.38322 * 120.11827 * 0.55244 * 23 22 21 25 25 C 1.38319 * 120.24040 * 359.72577 * 24 23 22 26 26 C 1.38018 * 120.12284 * 359.97438 * 25 24 23 27 27 N 1.31625 * 107.92447 * 359.61328 * 20 12 11 28 28 H 0.96996 * 120.00211 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47192 * 59.99566 * 9 7 2 30 30 H 1.09000 * 109.46638 * 300.00345 * 9 7 2 31 31 H 1.08003 * 126.00816 * 359.97438 * 11 10 9 32 32 H 1.09005 * 109.46744 * 140.02470 * 13 12 11 33 33 H 1.08997 * 109.46687 * 20.02968 * 13 12 11 34 34 H 1.00896 * 111.00578 * 56.04955 * 14 13 12 35 35 H 1.08999 * 109.47343 * 59.99625 * 15 14 13 36 36 H 1.09005 * 109.46870 * 299.99866 * 15 14 13 37 37 H 1.08999 * 109.47504 * 59.99434 * 16 15 14 38 38 H 1.09005 * 109.46851 * 299.99588 * 16 15 14 39 39 H 1.09002 * 115.54973 * 330.57913 * 17 16 15 40 40 H 1.09001 * 117.49733 * 214.97413 * 18 17 16 41 41 H 1.08995 * 117.49577 * 359.97438 * 18 17 16 42 42 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 43 43 H 1.09004 * 117.49681 * 107.48417 * 19 18 17 44 44 H 1.07997 * 120.06124 * 359.97438 * 22 21 20 45 45 H 1.07997 * 119.93998 * 180.27650 * 23 22 21 46 46 H 1.07999 * 119.87728 * 179.74019 * 24 23 22 47 47 H 1.08005 * 119.93857 * 180.02562 * 25 24 23 48 48 H 1.07997 * 120.06349 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2032 -3.6126 -0.0027 11 6 2.2414 -4.6233 0.8922 12 6 3.2577 -5.4448 0.5501 13 6 3.6646 -6.7021 1.2743 14 7 4.8227 -6.4198 2.1328 15 6 5.2485 -7.6257 2.8556 16 6 6.4536 -7.2927 3.7376 17 6 6.8967 -8.5485 4.4910 18 6 8.2907 -9.1008 4.1862 19 6 8.0210 -8.3966 5.5175 20 6 3.8732 -4.9142 -0.6003 21 6 5.0375 -5.4951 -1.3144 22 6 6.0468 -6.1367 -0.5998 23 6 7.1244 -6.6803 -1.2695 24 6 7.2090 -6.5788 -2.6464 25 6 6.2126 -5.9378 -3.3601 26 6 5.1275 -5.3961 -2.7012 27 7 3.2314 -3.8140 -0.9323 28 1 -0.4850 0.8400 0.0004 29 1 0.6248 -2.5563 -0.8919 30 1 0.6241 -2.5574 0.8880 31 1 1.5764 -4.7520 1.7334 32 1 3.9295 -7.4703 0.5477 33 1 2.8345 -7.0529 1.8876 34 1 4.6232 -5.6658 2.7728 35 1 5.5245 -8.4000 2.1398 36 1 4.4296 -7.9832 3.4799 37 1 6.1772 -6.5186 4.4534 38 1 7.2726 -6.9349 3.1136 39 1 6.1077 -9.2675 4.7114 40 1 8.4187 -10.1830 4.2061 41 1 8.8922 -8.5696 3.4486 42 1 8.4452 -7.4021 5.6559 43 1 7.9716 -9.0158 6.4133 44 1 5.9841 -6.2123 0.4757 45 1 7.9052 -7.1818 -0.7170 46 1 8.0560 -7.0018 -3.1660 47 1 6.2833 -5.8617 -4.4352 48 1 4.3499 -4.8961 -3.2595 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174606157.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:27 Heat of formation + Delta-G solvation = 114.333113 kcal Electronic energy + Delta-G solvation = -26478.287531 eV Core-core repulsion = 22920.848329 eV Total energy + Delta-G solvation = -3557.439202 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.57803 -38.47539 -38.08216 -36.07406 -33.81615 -32.30476 -31.40801 -30.48762 -30.01154 -28.83529 -26.99607 -24.47891 -23.60261 -22.70260 -22.30301 -22.19350 -21.64383 -20.63672 -19.77311 -19.14429 -16.69154 -16.64234 -16.28057 -15.69805 -15.36217 -15.15371 -14.79250 -14.50498 -14.44644 -14.15573 -14.02051 -13.60319 -13.38109 -13.11438 -12.90858 -12.65162 -12.28088 -12.21566 -11.97861 -11.84149 -11.73576 -11.61759 -11.47045 -11.36166 -10.96072 -10.91048 -10.81007 -10.70367 -10.44103 -10.26937 -10.08364 -9.85739 -9.72308 -9.01243 -8.65611 -8.59857 -8.36484 -8.07188 -7.55196 -6.27527 -4.32465 1.47607 1.75808 2.70974 3.21314 3.29007 3.29773 3.35636 3.51813 3.54740 4.14642 4.29609 4.32238 4.66383 4.69184 4.71129 5.00773 5.03136 5.08974 5.14335 5.20686 5.23079 5.32294 5.37817 5.40191 5.46432 5.52916 5.54560 5.66222 5.69193 5.78564 5.84032 5.85777 5.89581 5.95599 6.00164 6.15514 6.20577 6.29423 6.44835 6.56715 6.71689 6.83010 6.84393 6.98930 7.06672 7.10528 7.30045 7.38481 7.46136 7.67663 7.83671 7.96365 8.55964 8.77354 9.33756 10.81451 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.009802 B = 0.003119 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.738594 B = 8974.114154 C =10586.314113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.070 0.930 9 C 0.256 3.744 10 N -0.321 5.321 11 C 0.054 3.946 12 C -0.251 4.251 13 C 0.146 3.854 14 N -0.686 5.686 15 C 0.060 3.940 16 C -0.089 4.089 17 C -0.150 4.150 18 C -0.180 4.180 19 C -0.184 4.184 20 C 0.094 3.906 21 C 0.003 3.997 22 C -0.106 4.106 23 C -0.131 4.131 24 C -0.127 4.127 25 C -0.131 4.131 26 C -0.099 4.099 27 N -0.266 5.266 28 H 0.267 0.733 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.163 0.837 32 H 0.074 0.926 33 H 0.031 0.969 34 H 0.344 0.656 35 H 0.072 0.928 36 H 0.028 0.972 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.166 0.834 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.117 0.883 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.299 -18.418 5.658 22.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.140 4.140 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.566 4.566 8 H 0.088 0.912 9 C 0.139 3.861 10 N -0.101 5.101 11 C -0.096 4.096 12 C -0.264 4.264 13 C 0.017 3.983 14 N -0.317 5.317 15 C -0.069 4.069 16 C -0.126 4.126 17 C -0.169 4.169 18 C -0.217 4.217 19 C -0.221 4.221 20 C -0.070 4.070 21 C 0.001 3.999 22 C -0.125 4.125 23 C -0.149 4.149 24 C -0.145 4.145 25 C -0.149 4.149 26 C -0.118 4.118 27 N -0.090 5.090 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.180 0.820 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.163 0.837 35 H 0.091 0.909 36 H 0.046 0.954 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.120 0.880 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.183 0.817 45 H 0.134 0.866 46 H 0.132 0.868 47 H 0.135 0.865 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 12.336 -17.232 4.332 21.630 hybrid contribution -0.446 0.309 1.228 1.343 sum 11.890 -16.922 5.560 21.416 Atomic orbital electron populations 1.69922 1.06064 1.27575 1.49819 1.24940 0.94977 0.99591 0.94524 0.86278 0.80178 0.82395 0.77741 1.19444 1.20641 1.20746 1.21280 0.94058 0.89253 1.52002 0.91183 1.19758 0.85735 0.81417 0.99232 1.49380 1.23461 1.19059 1.18158 1.22219 1.00265 0.90398 0.96757 1.19589 1.02497 1.02524 1.01743 1.19989 0.90044 0.93985 0.94273 1.60447 1.37700 1.08058 1.25516 1.21944 0.95922 0.93225 0.95853 1.21163 0.98441 0.95421 0.97604 1.22288 0.92016 1.00153 1.02407 1.23035 0.99195 1.00186 0.99330 1.22962 1.03520 1.02247 0.93332 1.20455 0.96460 0.94329 0.95712 1.17899 0.92303 0.97645 0.92060 1.22161 0.91987 0.95212 1.03179 1.21042 0.98502 1.01136 0.94207 1.21130 0.98680 1.00105 0.94598 1.20981 0.94705 0.99643 0.99541 1.21295 0.98158 0.98455 0.93889 1.77658 1.00890 1.16402 1.14091 0.92357 0.93663 0.92751 0.81994 0.90782 0.95065 0.83745 0.90936 0.95415 0.91684 0.90830 0.88001 0.89113 0.88654 0.88794 0.89075 0.81708 0.86558 0.86836 0.86497 0.85979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.26 13.29 55.43 0.74 -24.53 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.91 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -14.64 9.23 -34.44 -0.32 -14.96 16 8 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 9 C 0.26 6.42 6.26 -5.19 -0.03 6.39 16 10 N -0.32 -7.26 3.67 -62.58 -0.23 -7.49 16 11 C 0.05 0.99 11.33 -17.26 -0.20 0.80 16 12 C -0.25 -4.29 5.58 -104.76 -0.59 -4.87 16 13 C 0.15 1.89 5.10 -4.98 -0.03 1.87 16 14 N -0.69 -7.84 4.01 -115.06 -0.46 -8.31 16 15 C 0.06 0.55 5.64 -3.82 -0.02 0.52 16 16 C -0.09 -0.75 5.76 -26.73 -0.15 -0.90 16 17 C -0.15 -1.14 5.73 -90.61 -0.52 -1.66 16 18 C -0.18 -1.30 10.18 -26.73 -0.27 -1.57 16 19 C -0.18 -1.32 10.25 -26.73 -0.27 -1.60 16 20 C 0.09 1.84 6.74 -82.77 -0.56 1.28 16 21 C 0.00 0.05 5.80 -104.89 -0.61 -0.56 16 22 C -0.11 -1.58 8.79 -39.26 -0.35 -1.93 16 23 C -0.13 -1.68 10.03 -39.63 -0.40 -2.08 16 24 C -0.13 -1.57 10.04 -39.52 -0.40 -1.97 16 25 C -0.13 -1.78 10.03 -39.63 -0.40 -2.18 16 26 C -0.10 -1.62 9.75 -39.26 -0.38 -2.00 16 27 N -0.27 -6.16 12.40 33.43 0.41 -5.74 16 28 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.05 1.34 8.07 -51.93 -0.42 0.92 16 31 H 0.16 2.44 8.06 -52.48 -0.42 2.01 16 32 H 0.07 0.97 7.79 -51.93 -0.40 0.56 16 33 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.34 4.04 8.72 -39.29 -0.34 3.70 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.67 7.88 -51.93 -0.41 0.26 16 39 H 0.10 0.74 8.08 -51.93 -0.42 0.32 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.10 0.69 8.03 -51.93 -0.42 0.27 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.17 2.35 4.70 -52.49 -0.25 2.10 16 45 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 46 H 0.11 1.11 8.06 -52.49 -0.42 0.68 16 47 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 48 H 0.12 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 400.76 15.07 6.04 6.04 Total: -1.00 -29.84 400.76 -11.80 -41.64 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -7.70 Total: 5.74 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -5.58 Total: -23.79 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.46 Total: -46.06 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.84 -11.80 -41.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174606157.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.972 kcal (2) G-P(sol) polarization free energy of solvation -29.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds