Wall clock time and date at job start Tue Mar 31 2020 15:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86810 * 119.99585 * 2 1 4 4 H 1.48503 * 109.46523 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47313 * 299.99838 * 3 2 1 6 6 H 1.48500 * 109.46824 * 60.00580 * 3 2 1 7 7 C 1.37872 * 120.00239 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99948 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00253 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.35042 * 125.92700 * 125.00094 * 10 9 7 12 12 C 1.35080 * 107.97818 * 179.97438 * 11 10 9 13 13 C 1.50700 * 126.07655 * 179.97438 * 12 11 10 14 14 N 1.46897 * 109.46997 * 260.02688 * 13 12 11 15 15 C 1.46904 * 110.99679 * 180.02562 * 14 13 12 16 16 C 1.52995 * 109.47223 * 180.02562 * 15 14 13 17 17 C 1.53003 * 109.47289 * 179.97438 * 16 15 14 18 18 C 1.53001 * 117.51964 * 116.28130 * 17 16 15 19 19 C 1.52999 * 60.00190 * 107.47982 * 18 17 16 20 20 C 1.40850 * 107.84895 * 0.22867 * 12 11 10 21 21 C 1.48420 * 126.03890 * 179.77261 * 20 12 11 22 22 C 1.39322 * 120.11708 * 324.72402 * 21 20 12 23 23 C 1.38026 * 119.87573 * 179.71918 * 22 21 20 24 24 C 1.38322 * 120.11827 * 0.55244 * 23 22 21 25 25 C 1.38319 * 120.24040 * 359.72577 * 24 23 22 26 26 C 1.38018 * 120.12284 * 359.97438 * 25 24 23 27 27 N 1.31625 * 107.92447 * 359.61328 * 20 12 11 28 28 H 0.96996 * 120.00211 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47192 * 59.99566 * 9 7 2 30 30 H 1.09000 * 109.46638 * 300.00345 * 9 7 2 31 31 H 1.08003 * 126.00816 * 359.97438 * 11 10 9 32 32 H 1.09005 * 109.46744 * 140.02470 * 13 12 11 33 33 H 1.08997 * 109.46687 * 20.02968 * 13 12 11 34 34 H 1.00896 * 111.00578 * 56.04955 * 14 13 12 35 35 H 1.08999 * 109.47343 * 59.99625 * 15 14 13 36 36 H 1.09005 * 109.46870 * 299.99866 * 15 14 13 37 37 H 1.08999 * 109.47504 * 59.99434 * 16 15 14 38 38 H 1.09005 * 109.46851 * 299.99588 * 16 15 14 39 39 H 1.09002 * 115.54973 * 330.57913 * 17 16 15 40 40 H 1.09001 * 117.49733 * 214.97413 * 18 17 16 41 41 H 1.08995 * 117.49577 * 359.97438 * 18 17 16 42 42 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 43 43 H 1.09004 * 117.49681 * 107.48417 * 19 18 17 44 44 H 1.07997 * 120.06124 * 359.97438 * 22 21 20 45 45 H 1.07997 * 119.93998 * 180.27650 * 23 22 21 46 46 H 1.07999 * 119.87728 * 179.74019 * 24 23 22 47 47 H 1.08005 * 119.93857 * 180.02562 * 25 24 23 48 48 H 1.07997 * 120.06349 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2032 -3.6126 -0.0027 11 6 2.2414 -4.6233 0.8922 12 6 3.2577 -5.4448 0.5501 13 6 3.6646 -6.7021 1.2743 14 7 4.8227 -6.4198 2.1328 15 6 5.2485 -7.6257 2.8556 16 6 6.4536 -7.2927 3.7376 17 6 6.8967 -8.5485 4.4910 18 6 8.2907 -9.1008 4.1862 19 6 8.0210 -8.3966 5.5175 20 6 3.8732 -4.9142 -0.6003 21 6 5.0375 -5.4951 -1.3144 22 6 6.0468 -6.1367 -0.5998 23 6 7.1244 -6.6803 -1.2695 24 6 7.2090 -6.5788 -2.6464 25 6 6.2126 -5.9378 -3.3601 26 6 5.1275 -5.3961 -2.7012 27 7 3.2314 -3.8140 -0.9323 28 1 -0.4850 0.8400 0.0004 29 1 0.6248 -2.5563 -0.8919 30 1 0.6241 -2.5574 0.8880 31 1 1.5764 -4.7520 1.7334 32 1 3.9295 -7.4703 0.5477 33 1 2.8345 -7.0529 1.8876 34 1 4.6232 -5.6658 2.7728 35 1 5.5245 -8.4000 2.1398 36 1 4.4296 -7.9832 3.4799 37 1 6.1772 -6.5186 4.4534 38 1 7.2726 -6.9349 3.1136 39 1 6.1077 -9.2675 4.7114 40 1 8.4187 -10.1830 4.2061 41 1 8.8922 -8.5696 3.4486 42 1 8.4452 -7.4021 5.6559 43 1 7.9716 -9.0158 6.4133 44 1 5.9841 -6.2123 0.4757 45 1 7.9052 -7.1818 -0.7170 46 1 8.0560 -7.0018 -3.1660 47 1 6.2833 -5.8617 -4.4352 48 1 4.3499 -4.8961 -3.2595 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174606157.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:21 Heat of formation + Delta-G solvation = 100.039294 kcal Electronic energy + Delta-G solvation = -26478.907357 eV Core-core repulsion = 22920.848329 eV Total energy + Delta-G solvation = -3558.059029 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 6.17 seconds Orbital eigenvalues (eV) -42.07109 -39.62867 -38.72040 -36.99129 -35.68753 -33.94608 -32.50423 -31.63936 -31.43622 -30.03103 -28.64895 -25.85314 -25.10515 -23.39435 -23.33442 -23.09262 -22.93878 -21.36424 -21.12528 -20.51821 -18.68047 -17.98304 -17.39036 -16.84476 -16.39034 -16.25487 -16.11228 -15.78990 -15.53672 -15.46509 -15.10511 -14.68797 -14.47504 -14.41623 -14.07996 -14.05401 -13.80711 -13.62121 -13.37159 -13.10289 -12.80083 -12.61567 -12.52957 -12.41777 -12.32470 -12.18169 -12.06409 -11.96726 -11.84332 -11.69891 -11.28427 -11.02198 -10.77863 -10.67443 -10.49248 -9.71288 -9.53509 -9.23492 -9.00147 -8.37532 -6.51645 0.28530 0.64387 1.20867 1.32994 1.35385 1.48380 1.87995 1.96855 2.31686 2.93831 2.97978 3.07797 3.38967 3.71950 3.89043 4.01554 4.10006 4.12577 4.19057 4.25517 4.29228 4.36357 4.39678 4.48779 4.50258 4.63611 4.72109 4.73694 4.83624 4.85102 4.86492 4.89958 4.90785 5.11501 5.12644 5.14240 5.15011 5.25695 5.28591 5.34557 5.39371 5.52916 5.53500 5.58091 5.73913 5.76536 5.87821 5.93985 6.16825 6.25374 6.29482 6.52433 6.61366 7.02667 7.18737 8.70309 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.009802 B = 0.003119 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.738594 B = 8974.114154 C =10586.314113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.020 3.980 3 Si 0.970 3.030 4 H -0.277 1.277 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.048 0.952 9 C 0.272 3.728 10 N -0.350 5.350 11 C 0.049 3.951 12 C -0.240 4.240 13 C 0.156 3.844 14 N -0.691 5.691 15 C 0.066 3.934 16 C -0.082 4.082 17 C -0.154 4.154 18 C -0.180 4.180 19 C -0.186 4.186 20 C 0.095 3.905 21 C -0.030 4.030 22 C -0.108 4.108 23 C -0.126 4.126 24 C -0.116 4.116 25 C -0.132 4.132 26 C -0.121 4.121 27 N -0.326 5.326 28 H 0.273 0.727 29 H 0.017 0.983 30 H 0.057 0.943 31 H 0.194 0.806 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.342 0.658 35 H 0.076 0.924 36 H 0.036 0.964 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.170 0.830 45 H 0.150 0.850 46 H 0.151 0.849 47 H 0.140 0.860 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.636 -20.259 6.554 25.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.181 4.181 3 Si 0.794 3.206 4 H -0.202 1.202 5 H -0.198 1.198 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.066 0.934 9 C 0.154 3.846 10 N -0.130 5.130 11 C -0.099 4.099 12 C -0.252 4.252 13 C 0.027 3.973 14 N -0.322 5.322 15 C -0.063 4.063 16 C -0.120 4.120 17 C -0.173 4.173 18 C -0.217 4.217 19 C -0.223 4.223 20 C -0.069 4.069 21 C -0.032 4.032 22 C -0.128 4.128 23 C -0.144 4.144 24 C -0.134 4.134 25 C -0.149 4.149 26 C -0.141 4.141 27 N -0.149 5.149 28 H 0.082 0.918 29 H 0.035 0.965 30 H 0.075 0.925 31 H 0.211 0.789 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.161 0.839 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.125 0.875 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.109 0.891 43 H 0.117 0.883 44 H 0.187 0.813 45 H 0.167 0.833 46 H 0.169 0.831 47 H 0.158 0.842 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 14.673 -19.100 5.241 24.649 hybrid contribution -1.055 0.740 0.913 1.579 sum 13.619 -18.359 6.154 23.673 Atomic orbital electron populations 1.69991 1.07151 1.28744 1.49982 1.25723 0.95851 1.02684 0.93832 0.85323 0.78326 0.78443 0.78484 1.20165 1.19824 1.19076 1.21385 0.93175 0.91063 1.52776 0.93374 1.19266 0.85821 0.81781 0.97777 1.49083 1.24100 1.19929 1.19898 1.22852 1.01016 0.89307 0.96762 1.20042 1.01109 1.03263 1.00825 1.19935 0.91297 0.91607 0.94507 1.60363 1.36845 1.09108 1.25876 1.21939 0.96329 0.92119 0.95868 1.21077 0.97839 0.95791 0.97311 1.22269 0.92419 0.99896 1.02685 1.23095 0.98680 1.00721 0.99182 1.23024 1.03218 1.02358 0.93733 1.21078 0.96420 0.93224 0.96174 1.18063 0.92817 0.99701 0.92594 1.22280 0.92007 0.94994 1.03476 1.21437 0.98182 1.00039 0.94712 1.21577 0.98851 0.98347 0.94621 1.21266 0.93902 0.98927 1.00845 1.21302 0.99128 0.99790 0.93875 1.77572 1.02504 1.18947 1.15917 0.91776 0.96538 0.92549 0.78927 0.90518 0.93217 0.83944 0.90568 0.94589 0.92099 0.91536 0.87456 0.88249 0.88747 0.89068 0.88285 0.81268 0.83258 0.83105 0.84250 0.88188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.92 13.29 21.44 0.28 -52.63 16 2 C 0.02 1.10 5.46 84.65 0.46 1.56 16 3 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 4 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 7 C -0.55 -31.69 9.23 25.60 0.24 -31.45 16 8 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 9 C 0.27 14.47 6.26 85.63 0.54 15.01 16 10 N -0.35 -16.68 3.67 -351.91 -1.29 -17.97 16 11 C 0.05 1.84 11.33 83.47 0.95 2.78 16 12 C -0.24 -8.25 5.58 -19.95 -0.11 -8.36 16 13 C 0.16 3.80 5.10 85.56 0.44 4.24 16 14 N -0.69 -14.64 4.01 -517.93 -2.08 -16.71 16 15 C 0.07 1.05 5.64 86.30 0.49 1.54 16 16 C -0.08 -1.23 5.76 30.59 0.18 -1.05 16 17 C -0.15 -2.01 5.73 -10.79 -0.06 -2.07 16 18 C -0.18 -2.18 10.18 30.59 0.31 -1.87 16 19 C -0.19 -2.33 10.25 30.60 0.31 -2.02 16 20 C 0.09 3.86 6.74 42.53 0.29 4.14 16 21 C -0.03 -1.05 5.80 -20.04 -0.12 -1.16 16 22 C -0.11 -3.07 8.79 22.48 0.20 -2.87 16 23 C -0.13 -2.81 10.03 22.24 0.22 -2.58 16 24 C -0.12 -2.46 10.04 22.31 0.22 -2.24 16 25 C -0.13 -3.38 10.03 22.24 0.22 -3.15 16 26 C -0.12 -4.08 9.75 22.48 0.22 -3.86 16 27 N -0.33 -16.01 12.40 -48.15 -0.60 -16.61 16 28 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 29 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 2.91 8.07 -2.39 -0.02 2.89 16 31 H 0.19 5.70 8.06 -2.91 -0.02 5.68 16 32 H 0.08 1.87 7.79 -2.38 -0.02 1.85 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.34 7.59 8.72 -89.70 -0.78 6.81 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.04 0.53 8.14 -2.38 -0.02 0.51 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.07 1.09 7.88 -2.38 -0.02 1.07 16 39 H 0.11 1.29 8.08 -2.39 -0.02 1.27 16 40 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.09 1.16 8.03 -2.39 -0.02 1.14 16 42 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 44 H 0.17 4.55 4.70 -2.91 -0.01 4.54 16 45 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 46 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 47 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 48 H 0.10 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -67.90 400.76 3.50 -64.41 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.16 Total: 26.21 kcal Atomic # 6 Polarization: -38.42 SS G_CDS: 4.99 Total: -33.43 kcal Atomic # 7 Polarization: -100.25 SS G_CDS: -3.68 Total: -103.93 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -67.90 3.50 -64.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174606157.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.446 kcal (2) G-P(sol) polarization free energy of solvation -67.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.17 seconds