Wall clock time and date at job start Tue Mar 31 2020 14:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 113.99808 * 2 1 4 4 C 1.50706 * 109.47193 * 179.97438 * 3 2 1 5 5 C 1.38250 * 120.00131 * 270.02036 * 4 3 2 6 6 C 1.38215 * 120.00253 * 179.97438 * 5 4 3 7 7 C 1.38262 * 119.99809 * 359.81185 * 6 5 4 8 8 C 1.38215 * 119.99907 * 0.41845 * 7 6 5 9 9 C 1.50693 * 119.99990 * 179.80956 * 8 7 6 10 10 N 1.46894 * 109.47337 * 269.72671 * 9 8 7 11 11 C 1.46901 * 111.00318 * 179.97438 * 10 9 8 12 12 H 1.09003 * 109.46903 * 325.00630 * 11 10 9 13 13 C 1.52993 * 109.47489 * 205.00440 * 11 10 9 14 14 C 1.50699 * 109.47311 * 64.99713 * 13 11 10 15 15 H 1.07996 * 119.99974 * 0.02562 * 14 13 11 16 16 C 1.37886 * 120.00057 * 180.02562 * 14 13 11 17 17 N 1.31510 * 119.99707 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99861 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46958 * 90.00042 * 18 16 14 20 20 H 1.48496 * 109.47274 * 209.99767 * 18 16 14 21 21 H 1.48500 * 109.47289 * 330.00175 * 18 16 14 22 22 C 1.50702 * 109.47175 * 84.99790 * 11 10 9 23 23 C 1.38234 * 120.00271 * 220.00039 * 22 11 10 24 24 C 1.38230 * 119.99880 * 179.97438 * 23 22 11 25 25 C 1.38235 * 120.00326 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99814 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99485 * 39.98167 * 22 11 10 28 28 C 1.38219 * 119.99585 * 90.00023 * 4 3 2 29 29 H 1.08992 * 109.47510 * 300.00116 * 1 2 3 30 30 H 1.08997 * 109.47096 * 60.00544 * 1 2 3 31 31 H 1.09004 * 109.46850 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47266 * 59.99871 * 3 2 1 33 33 H 1.09006 * 109.47121 * 299.99236 * 3 2 1 34 34 H 1.08000 * 120.00017 * 359.97438 * 5 4 3 35 35 H 1.07997 * 120.00261 * 180.02562 * 6 5 4 36 36 H 1.07996 * 120.00199 * 180.23399 * 7 6 5 37 37 H 1.09004 * 109.46917 * 149.72884 * 9 8 7 38 38 H 1.09003 * 109.47009 * 29.73092 * 9 8 7 39 39 H 1.00898 * 110.99760 * 56.04756 * 10 9 8 40 40 H 1.08999 * 109.47670 * 184.99898 * 13 11 10 41 41 H 1.09010 * 109.47007 * 304.99987 * 13 11 10 42 42 H 0.97004 * 120.00100 * 179.97438 * 17 16 14 43 43 H 1.08001 * 119.99769 * 359.97438 * 23 22 11 44 44 H 1.08000 * 120.00376 * 180.02562 * 24 23 22 45 45 H 1.08000 * 120.00616 * 179.72578 * 25 24 23 46 46 H 1.08001 * 120.00299 * 179.97438 * 26 25 24 47 47 H 1.07997 * 120.00489 * 0.02562 * 27 22 11 48 48 H 1.07999 * 120.00456 * 359.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2011 1.1318 1.1982 6 6 5.5789 1.0222 1.1988 7 6 6.2682 0.9634 0.0017 8 6 5.5802 1.0229 -1.1955 9 6 6.3318 0.9632 -2.5003 10 7 6.6849 2.3244 -2.9248 11 6 7.4210 2.3052 -4.1959 12 1 8.0568 1.4206 -4.2343 13 6 8.2879 3.5613 -4.3024 14 6 9.3452 3.5345 -3.2290 15 1 9.3943 2.7043 -2.5400 16 6 10.2500 4.5699 -3.1265 17 7 10.1899 5.5811 -3.9651 18 14 11.5602 4.5369 -1.7955 19 1 12.7746 3.8566 -2.3130 20 1 11.9016 5.9276 -1.4023 21 1 11.0462 3.8002 -0.6130 22 6 6.4432 2.2709 -5.3422 23 6 6.7004 1.4805 -6.4467 24 6 5.8032 1.4487 -7.4978 25 6 4.6485 2.2068 -7.4442 26 6 4.3908 2.9963 -6.3392 27 6 5.2889 3.0295 -5.2887 28 6 4.2018 1.1318 -1.1961 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6885 1.8464 0.8899 33 1 1.6886 1.8464 -0.8901 34 1 3.6624 1.1747 2.1333 35 1 6.1168 0.9790 2.1343 36 1 7.3444 0.8739 0.0021 37 1 5.7044 0.4969 -3.2600 38 1 7.2408 0.3760 -2.3694 39 1 7.2127 2.8009 -2.2089 40 1 8.7652 3.5916 -5.2819 41 1 7.6633 4.4457 -4.1751 42 1 10.8262 6.3097 -3.8928 43 1 7.6024 0.8879 -6.4884 44 1 6.0039 0.8310 -8.3607 45 1 3.9497 2.1854 -8.2673 46 1 3.4889 3.5890 -6.2974 47 1 5.0879 3.6471 -4.4259 48 1 3.6639 1.1738 -2.1317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178755778.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:05 Heat of formation + Delta-G solvation = -6.115751 kcal Electronic energy + Delta-G solvation = -26686.526577 eV Core-core repulsion = 23091.571569 eV Total energy + Delta-G solvation = -3594.955008 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.56705 -38.88237 -37.73266 -36.03286 -33.25678 -32.22120 -31.58661 -30.41253 -29.90706 -28.54105 -27.39603 -25.40933 -25.25155 -23.85587 -22.14646 -21.93543 -21.81117 -20.34453 -19.53983 -16.69981 -16.60014 -16.45415 -16.15362 -16.06971 -15.53533 -15.21510 -14.86893 -14.71129 -14.62958 -14.27119 -13.86055 -13.51721 -13.29299 -12.85380 -12.72333 -12.59979 -12.47712 -12.42398 -12.18558 -12.04476 -11.84532 -11.63664 -11.26267 -11.05737 -10.97513 -10.83768 -10.63272 -10.59480 -10.45236 -10.30515 -9.89153 -9.61654 -9.19793 -8.72796 -8.62888 -8.45188 -8.39922 -8.05382 -7.76151 -6.06811 -4.11040 1.36831 1.53181 1.87558 1.92878 3.27084 3.34368 3.35845 3.54226 4.08512 4.30714 4.40601 4.77583 4.78187 4.92621 5.08749 5.09613 5.11517 5.22573 5.23418 5.30845 5.31950 5.34749 5.41399 5.41820 5.50027 5.58310 5.62624 5.69729 5.81880 5.95227 6.04061 6.08523 6.17310 6.20546 6.29777 6.44808 6.55763 6.57424 6.63084 6.72073 6.82012 6.92756 6.93626 6.99077 7.11087 7.21075 7.44039 7.53792 7.58216 7.90766 7.96479 8.18388 8.29025 8.94369 9.53428 11.03701 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.008245 B = 0.003967 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3395.275408 B = 7055.955469 C = 9824.339002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.105 3.895 4 C -0.099 4.099 5 C -0.105 4.105 6 C -0.124 4.124 7 C -0.104 4.104 8 C -0.072 4.072 9 C 0.097 3.903 10 N -0.673 5.673 11 C 0.126 3.874 12 H 0.041 0.959 13 C 0.029 3.971 14 C -0.526 4.526 15 H 0.053 0.947 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.052 4.052 23 C -0.124 4.124 24 C -0.128 4.128 25 C -0.138 4.138 26 C -0.131 4.131 27 C -0.088 4.088 28 C -0.075 4.075 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.072 0.928 38 H 0.034 0.966 39 H 0.360 0.640 40 H 0.023 0.977 41 H 0.028 0.972 42 H 0.262 0.738 43 H 0.115 0.885 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.112 0.888 47 H 0.128 0.872 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.097 -9.557 4.594 19.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.029 3.971 4 C -0.099 4.099 5 C -0.123 4.123 6 C -0.142 4.142 7 C -0.123 4.123 8 C -0.072 4.072 9 C -0.032 4.032 10 N -0.307 5.307 11 C 0.017 3.983 12 H 0.059 0.941 13 C -0.008 4.008 14 C -0.564 4.564 15 H 0.071 0.929 16 C -0.139 4.139 17 N -0.527 5.527 18 Si 0.718 3.282 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.053 4.053 23 C -0.142 4.142 24 C -0.146 4.146 25 C -0.156 4.156 26 C -0.149 4.149 27 C -0.106 4.106 28 C -0.094 4.094 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.090 0.910 38 H 0.052 0.948 39 H 0.181 0.819 40 H 0.041 0.959 41 H 0.047 0.953 42 H 0.071 0.929 43 H 0.133 0.867 44 H 0.130 0.870 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.146 0.854 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.491 -9.418 4.255 19.462 hybrid contribution 1.479 0.025 0.929 1.747 sum -15.012 -9.393 5.184 18.452 Atomic orbital electron populations 1.22743 0.81249 1.02695 0.99945 1.87981 1.19381 1.27736 1.95391 1.21344 0.90184 0.84822 1.00786 1.19484 0.93584 1.03135 0.93692 1.20931 0.94317 0.99944 0.97108 1.21056 0.94114 1.01053 0.97977 1.21176 1.00038 0.98959 0.92099 1.19884 0.93661 0.98767 0.94930 1.20900 0.97509 0.92082 0.92733 1.60508 1.49630 1.14232 1.06325 1.20666 0.90703 1.00910 0.86009 0.94073 1.19245 0.93218 0.90840 0.97477 1.21113 1.14282 1.05758 1.15268 0.92896 1.24972 0.97582 0.95422 0.95958 1.69962 1.36656 1.09377 1.36663 0.86629 0.82101 0.77303 0.82178 1.20738 1.21181 1.19847 1.20197 0.95202 0.94541 0.95386 1.21045 0.99217 0.99838 0.94148 1.20967 0.95001 1.00194 0.98411 1.20968 0.97758 0.98601 0.98272 1.21120 0.99610 0.99663 0.94470 1.21051 0.93314 0.98203 0.98018 1.20885 0.93652 0.97656 0.97219 0.94177 0.94003 0.89689 0.92637 0.92334 0.86490 0.86146 0.86001 0.90961 0.94754 0.81863 0.95851 0.95324 0.92866 0.86705 0.86972 0.87142 0.86951 0.85400 0.86013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.54 10.69 -35.23 -0.38 -4.92 16 3 C 0.10 1.14 6.06 36.01 0.22 1.36 16 4 C -0.10 -1.28 5.51 -104.62 -0.58 -1.86 16 5 C -0.10 -1.29 9.70 -39.59 -0.38 -1.67 16 6 C -0.12 -1.57 10.05 -39.58 -0.40 -1.96 16 7 C -0.10 -1.47 9.70 -39.58 -0.38 -1.85 16 8 C -0.07 -1.07 5.39 -104.62 -0.56 -1.63 16 9 C 0.10 1.53 5.61 -4.98 -0.03 1.51 16 10 N -0.67 -12.32 5.54 -109.23 -0.61 -12.93 16 11 C 0.13 2.53 2.19 -68.87 -0.15 2.38 16 12 H 0.04 0.84 7.66 -51.93 -0.40 0.44 16 13 C 0.03 0.73 4.55 -27.89 -0.13 0.60 16 14 C -0.53 -13.93 8.12 -34.44 -0.28 -14.21 16 15 H 0.05 1.35 7.49 -52.49 -0.39 0.96 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -25.95 13.29 55.43 0.74 -25.22 16 18 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 22 C -0.05 -0.96 4.71 -104.62 -0.49 -1.46 16 23 C -0.12 -2.09 9.67 -39.59 -0.38 -2.47 16 24 C -0.13 -1.90 10.05 -39.59 -0.40 -2.30 16 25 C -0.14 -1.98 10.05 -39.58 -0.40 -2.38 16 26 C -0.13 -1.99 10.05 -39.58 -0.40 -2.38 16 27 C -0.09 -1.53 9.32 -39.58 -0.37 -1.90 16 28 C -0.08 -1.07 9.36 -39.58 -0.37 -1.44 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 33 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 34 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.07 1.13 7.94 -51.93 -0.41 0.72 16 38 H 0.03 0.55 8.00 -51.93 -0.42 0.13 16 39 H 0.36 7.22 7.20 -39.29 -0.28 6.94 16 40 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.03 0.77 8.14 -51.92 -0.42 0.35 16 42 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.11 1.82 8.04 -52.49 -0.42 1.40 16 44 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 45 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 46 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 47 H 0.13 2.29 7.72 -52.49 -0.41 1.89 16 48 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 402.56 15.07 6.07 6.07 Total: -1.00 -29.72 402.56 -11.44 -41.16 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -7.78 Total: 8.55 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: -4.47 Total: -28.67 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.13 Total: -38.14 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.38 Total: -4.92 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -29.72 -11.44 -41.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178755778.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.043 kcal (2) G-P(sol) polarization free energy of solvation -29.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds