Wall clock time and date at job start Tue Mar 31 2020 14:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 113.99808 * 2 1 4 4 C 1.50706 * 109.47193 * 179.97438 * 3 2 1 5 5 C 1.38250 * 120.00131 * 270.02036 * 4 3 2 6 6 C 1.38215 * 120.00253 * 179.97438 * 5 4 3 7 7 C 1.38262 * 119.99809 * 359.81185 * 6 5 4 8 8 C 1.38215 * 119.99907 * 0.41845 * 7 6 5 9 9 C 1.50693 * 119.99990 * 179.80956 * 8 7 6 10 10 N 1.46894 * 109.47337 * 269.72671 * 9 8 7 11 11 C 1.46901 * 111.00318 * 179.97438 * 10 9 8 12 12 H 1.09003 * 109.46903 * 325.00630 * 11 10 9 13 13 C 1.52993 * 109.47489 * 205.00440 * 11 10 9 14 14 C 1.50699 * 109.47311 * 64.99713 * 13 11 10 15 15 H 1.07996 * 119.99974 * 0.02562 * 14 13 11 16 16 C 1.37886 * 120.00057 * 180.02562 * 14 13 11 17 17 N 1.31510 * 119.99707 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99861 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46958 * 90.00042 * 18 16 14 20 20 H 1.48496 * 109.47274 * 209.99767 * 18 16 14 21 21 H 1.48500 * 109.47289 * 330.00175 * 18 16 14 22 22 C 1.50702 * 109.47175 * 84.99790 * 11 10 9 23 23 C 1.38234 * 120.00271 * 220.00039 * 22 11 10 24 24 C 1.38230 * 119.99880 * 179.97438 * 23 22 11 25 25 C 1.38235 * 120.00326 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99814 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99485 * 39.98167 * 22 11 10 28 28 C 1.38219 * 119.99585 * 90.00023 * 4 3 2 29 29 H 1.08992 * 109.47510 * 300.00116 * 1 2 3 30 30 H 1.08997 * 109.47096 * 60.00544 * 1 2 3 31 31 H 1.09004 * 109.46850 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47266 * 59.99871 * 3 2 1 33 33 H 1.09006 * 109.47121 * 299.99236 * 3 2 1 34 34 H 1.08000 * 120.00017 * 359.97438 * 5 4 3 35 35 H 1.07997 * 120.00261 * 180.02562 * 6 5 4 36 36 H 1.07996 * 120.00199 * 180.23399 * 7 6 5 37 37 H 1.09004 * 109.46917 * 149.72884 * 9 8 7 38 38 H 1.09003 * 109.47009 * 29.73092 * 9 8 7 39 39 H 1.00898 * 110.99760 * 56.04756 * 10 9 8 40 40 H 1.08999 * 109.47670 * 184.99898 * 13 11 10 41 41 H 1.09010 * 109.47007 * 304.99987 * 13 11 10 42 42 H 0.97004 * 120.00100 * 179.97438 * 17 16 14 43 43 H 1.08001 * 119.99769 * 359.97438 * 23 22 11 44 44 H 1.08000 * 120.00376 * 180.02562 * 24 23 22 45 45 H 1.08000 * 120.00616 * 179.72578 * 25 24 23 46 46 H 1.08001 * 120.00299 * 179.97438 * 26 25 24 47 47 H 1.07997 * 120.00489 * 0.02562 * 27 22 11 48 48 H 1.07999 * 120.00456 * 359.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2011 1.1318 1.1982 6 6 5.5789 1.0222 1.1988 7 6 6.2682 0.9634 0.0017 8 6 5.5802 1.0229 -1.1955 9 6 6.3318 0.9632 -2.5003 10 7 6.6849 2.3244 -2.9248 11 6 7.4210 2.3052 -4.1959 12 1 8.0568 1.4206 -4.2343 13 6 8.2879 3.5613 -4.3024 14 6 9.3452 3.5345 -3.2290 15 1 9.3943 2.7043 -2.5400 16 6 10.2500 4.5699 -3.1265 17 7 10.1899 5.5811 -3.9651 18 14 11.5602 4.5369 -1.7955 19 1 12.7746 3.8566 -2.3130 20 1 11.9016 5.9276 -1.4023 21 1 11.0462 3.8002 -0.6130 22 6 6.4432 2.2709 -5.3422 23 6 6.7004 1.4805 -6.4467 24 6 5.8032 1.4487 -7.4978 25 6 4.6485 2.2068 -7.4442 26 6 4.3908 2.9963 -6.3392 27 6 5.2889 3.0295 -5.2887 28 6 4.2018 1.1318 -1.1961 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6885 1.8464 0.8899 33 1 1.6886 1.8464 -0.8901 34 1 3.6624 1.1747 2.1333 35 1 6.1168 0.9790 2.1343 36 1 7.3444 0.8739 0.0021 37 1 5.7044 0.4969 -3.2600 38 1 7.2408 0.3760 -2.3694 39 1 7.2127 2.8009 -2.2089 40 1 8.7652 3.5916 -5.2819 41 1 7.6633 4.4457 -4.1751 42 1 10.8262 6.3097 -3.8928 43 1 7.6024 0.8879 -6.4884 44 1 6.0039 0.8310 -8.3607 45 1 3.9497 2.1854 -8.2673 46 1 3.4889 3.5890 -6.2974 47 1 5.0879 3.6471 -4.4259 48 1 3.6639 1.1738 -2.1317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178755778.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:01 Heat of formation + Delta-G solvation = -20.970285 kcal Electronic energy + Delta-G solvation = -26687.170718 eV Core-core repulsion = 23091.571569 eV Total energy + Delta-G solvation = -3595.599149 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 4.14 seconds Orbital eigenvalues (eV) -40.65247 -40.14241 -38.58847 -37.47282 -35.03711 -33.69314 -32.63381 -31.66329 -31.14797 -30.29956 -28.15922 -26.88608 -26.20085 -25.33736 -23.69188 -23.21444 -22.94747 -21.43226 -21.03883 -18.59551 -17.65589 -17.46446 -17.27954 -17.08072 -16.70632 -16.44226 -16.38069 -16.10633 -15.83654 -15.54910 -15.03236 -14.77949 -14.65747 -14.19214 -14.07992 -13.71633 -13.67350 -13.54742 -13.51095 -13.26858 -13.11005 -13.07490 -12.76478 -12.55539 -12.35169 -12.31249 -12.08895 -11.85005 -11.81071 -11.69923 -11.42671 -11.15284 -10.63901 -10.59409 -9.75528 -9.71530 -9.67833 -9.41605 -9.24183 -8.19901 -6.31443 0.33642 0.48150 0.60413 0.66050 1.39767 1.40166 1.50837 2.39427 2.61973 3.02705 3.11898 3.19266 3.55314 3.80350 3.89933 4.02373 4.11636 4.17825 4.22984 4.29276 4.30632 4.35398 4.41708 4.46013 4.53215 4.57270 4.59127 4.62779 4.67611 4.78964 4.82054 4.83116 4.87613 4.89816 5.10778 5.16709 5.22222 5.30767 5.41551 5.48450 5.54826 5.62733 5.68206 5.72423 5.73190 5.80325 5.87309 6.08424 6.16255 6.22295 6.26952 6.36206 6.57798 6.82887 7.37512 8.91401 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.008245 B = 0.003967 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3395.275408 B = 7055.955469 C = 9824.339002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.412 6.412 3 C 0.106 3.894 4 C -0.105 4.105 5 C -0.105 4.105 6 C -0.124 4.124 7 C -0.119 4.119 8 C -0.088 4.088 9 C 0.106 3.894 10 N -0.670 5.670 11 C 0.141 3.859 12 H 0.033 0.967 13 C 0.043 3.957 14 C -0.533 4.533 15 H 0.060 0.940 16 C 0.007 3.993 17 N -0.929 5.929 18 Si 0.960 3.040 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.260 1.260 22 C -0.077 4.077 23 C -0.140 4.140 24 C -0.125 4.125 25 C -0.131 4.131 26 C -0.131 4.131 27 C -0.105 4.105 28 C -0.088 4.088 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.121 0.879 37 H 0.071 0.929 38 H 0.031 0.969 39 H 0.347 0.653 40 H -0.010 1.010 41 H -0.003 1.003 42 H 0.263 0.737 43 H 0.117 0.883 44 H 0.143 0.857 45 H 0.147 0.853 46 H 0.138 0.862 47 H 0.113 0.887 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.732 -10.596 5.401 21.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.332 6.332 3 C 0.030 3.970 4 C -0.105 4.105 5 C -0.123 4.123 6 C -0.142 4.142 7 C -0.138 4.138 8 C -0.088 4.088 9 C -0.023 4.023 10 N -0.302 5.302 11 C 0.031 3.969 12 H 0.051 0.949 13 C 0.006 3.994 14 C -0.571 4.571 15 H 0.078 0.922 16 C -0.192 4.192 17 N -0.569 5.569 18 Si 0.785 3.215 19 H -0.202 1.202 20 H -0.210 1.210 21 H -0.184 1.184 22 C -0.078 4.078 23 C -0.158 4.158 24 C -0.143 4.143 25 C -0.149 4.149 26 C -0.149 4.149 27 C -0.123 4.123 28 C -0.106 4.106 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.139 0.861 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.167 0.833 40 H 0.008 0.992 41 H 0.016 0.984 42 H 0.072 0.928 43 H 0.135 0.865 44 H 0.161 0.839 45 H 0.165 0.835 46 H 0.156 0.844 47 H 0.131 0.869 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.146 -10.481 5.061 21.558 hybrid contribution 1.876 0.324 0.633 2.006 sum -16.270 -10.158 5.694 20.008 Atomic orbital electron populations 1.22943 0.79377 1.03811 1.01037 1.87931 1.21488 1.28124 1.95618 1.21369 0.88783 0.84918 1.01959 1.19797 0.95027 1.02234 0.93430 1.21285 0.94357 0.98705 0.97952 1.21356 0.94552 1.00008 0.98282 1.21300 1.00236 0.99696 0.92569 1.19811 0.94081 1.00432 0.94496 1.20815 0.97457 0.90393 0.93616 1.60522 1.48555 1.15862 1.05242 1.20326 0.90829 0.97784 0.87925 0.94944 1.18991 0.93062 0.92064 0.95300 1.21464 1.14430 1.05796 1.15434 0.92177 1.25876 0.99997 0.95018 0.98271 1.70103 1.37856 1.10251 1.38692 0.85523 0.79090 0.77370 0.79536 1.20180 1.21021 1.18439 1.20092 0.95605 0.96559 0.95525 1.21214 1.00112 1.00034 0.94478 1.21339 0.94454 1.00091 0.98428 1.21412 0.97872 0.96988 0.98624 1.21424 0.99812 0.99761 0.93859 1.21037 0.93968 0.98522 0.98768 1.20954 0.93428 0.98338 0.97917 0.92688 0.93277 0.88656 0.90677 0.91941 0.83894 0.83750 0.86066 0.91010 0.95067 0.83312 0.99168 0.98414 0.92823 0.86517 0.83911 0.83484 0.84386 0.86895 0.86277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -9.03 10.69 -148.98 -1.59 -10.62 16 3 C 0.11 2.13 6.06 71.24 0.43 2.56 16 4 C -0.10 -2.60 5.51 -19.86 -0.11 -2.71 16 5 C -0.10 -2.38 9.70 22.27 0.22 -2.16 16 6 C -0.12 -2.95 10.05 22.27 0.22 -2.73 16 7 C -0.12 -3.36 9.70 22.27 0.22 -3.14 16 8 C -0.09 -2.66 5.39 -19.87 -0.11 -2.77 16 9 C 0.11 3.50 5.61 85.56 0.48 3.98 16 10 N -0.67 -25.85 5.54 -499.48 -2.77 -28.62 16 11 C 0.14 5.98 2.19 44.17 0.10 6.08 16 12 H 0.03 1.41 7.66 -2.39 -0.02 1.39 16 13 C 0.04 2.28 4.55 29.85 0.14 2.41 16 14 C -0.53 -29.30 8.12 25.60 0.21 -29.09 16 15 H 0.06 3.15 7.49 -2.91 -0.02 3.12 16 16 C 0.01 0.39 5.46 84.66 0.46 0.85 16 17 N -0.93 -56.20 13.29 21.45 0.28 -55.92 16 18 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 22 C -0.08 -2.95 4.71 -19.87 -0.09 -3.04 16 23 C -0.14 -4.75 9.67 22.27 0.22 -4.53 16 24 C -0.13 -3.48 10.05 22.27 0.22 -3.26 16 25 C -0.13 -3.40 10.05 22.27 0.22 -3.18 16 26 C -0.13 -3.80 10.05 22.27 0.22 -3.58 16 27 C -0.10 -3.75 9.32 22.27 0.21 -3.54 16 28 C -0.09 -2.49 9.36 22.27 0.21 -2.28 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.20 8.08 -2.39 -0.02 1.18 16 33 H 0.06 1.18 8.09 -2.38 -0.02 1.16 16 34 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 35 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.12 3.32 8.06 -2.91 -0.02 3.30 16 37 H 0.07 2.35 7.94 -2.38 -0.02 2.33 16 38 H 0.03 1.04 8.00 -2.39 -0.02 1.02 16 39 H 0.35 14.69 7.20 -89.70 -0.65 14.04 16 40 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 41 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 42 H 0.26 15.01 8.31 -92.71 -0.77 14.23 16 43 H 0.12 3.79 8.04 -2.91 -0.02 3.77 16 44 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 45 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 46 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 47 H 0.11 4.29 7.72 -2.91 -0.02 4.26 16 48 H 0.12 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -66.51 402.56 2.94 -63.56 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: 0.28 Total: 34.47 kcal Atomic # 6 Polarization: -53.26 SS G_CDS: 4.71 Total: -48.55 kcal Atomic # 7 Polarization: -82.05 SS G_CDS: -2.48 Total: -84.53 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -1.59 Total: -10.62 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -66.51 2.94 -63.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178755778.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.592 kcal (2) G-P(sol) polarization free energy of solvation -66.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.14 seconds