Wall clock time and date at job start Tue Mar 31 2020 14:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35902 * 116.99388 * 2 1 4 4 C 1.38736 * 120.05201 * 179.97438 * 3 2 1 5 5 C 1.38150 * 119.94438 * 179.97438 * 4 3 2 6 6 C 1.38265 * 120.05229 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94292 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47060 * 339.99815 * 7 6 5 9 9 N 1.46901 * 109.46921 * 219.99634 * 7 6 5 10 10 C 1.46900 * 110.99890 * 154.99793 * 9 7 6 11 11 C 1.52996 * 109.47450 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47493 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47255 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99871 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00089 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99870 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99938 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47361 * 59.99877 * 17 15 13 19 19 H 1.48503 * 109.46755 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47193 * 299.99294 * 17 15 13 21 21 C 1.50699 * 109.47269 * 99.99668 * 7 6 5 22 22 C 1.38238 * 119.99878 * 79.72917 * 21 7 6 23 23 C 1.38235 * 120.00075 * 179.79104 * 22 21 7 24 24 C 1.38242 * 119.99732 * 0.43751 * 23 22 21 25 25 C 1.38238 * 119.99926 * 359.81296 * 24 23 22 26 26 C 1.38228 * 120.00161 * 260.00106 * 21 7 6 27 27 C 1.38262 * 120.11410 * 0.26790 * 6 5 4 28 28 C 1.38151 * 120.05717 * 359.45944 * 27 6 5 29 29 H 1.08998 * 109.47291 * 299.99550 * 1 2 3 30 30 H 1.09004 * 109.47202 * 60.00313 * 1 2 3 31 31 H 1.09003 * 109.46597 * 179.97438 * 1 2 3 32 32 H 1.07996 * 120.02833 * 359.95544 * 4 3 2 33 33 H 1.07992 * 119.97482 * 180.02562 * 5 4 3 34 34 H 1.00898 * 111.00476 * 278.95183 * 9 7 6 35 35 H 1.09002 * 109.47391 * 300.00224 * 10 9 7 36 36 H 1.09005 * 109.47266 * 59.99895 * 10 9 7 37 37 H 1.09004 * 109.47258 * 300.00035 * 11 10 9 38 38 H 1.08994 * 109.47532 * 59.99762 * 11 10 9 39 39 H 1.08995 * 109.46568 * 300.00030 * 12 11 10 40 40 H 1.09003 * 109.46678 * 59.99669 * 12 11 10 41 41 H 0.96996 * 119.99546 * 180.02562 * 16 15 13 42 42 H 1.08001 * 120.00036 * 359.97438 * 22 21 7 43 43 H 1.07996 * 120.00253 * 180.27384 * 23 22 21 44 44 H 1.08000 * 119.99736 * 179.84001 * 24 23 22 45 45 H 1.07994 * 119.99606 * 180.02562 * 25 24 23 46 46 H 1.08004 * 120.00247 * 359.97438 * 26 21 7 47 47 H 1.08003 * 119.97269 * 179.70728 * 27 6 5 48 48 H 1.08001 * 120.03117 * 180.27447 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2850 0.0005 5 6 4.0560 2.5171 0.0000 6 6 3.3017 3.6759 -0.0005 7 6 3.9858 5.0187 -0.0017 8 1 5.0113 4.9044 0.3495 9 7 3.2629 5.9373 0.8881 10 6 4.1506 6.9975 1.3839 11 6 3.3642 7.9317 2.3055 12 6 4.2886 9.0365 2.8214 13 6 3.5137 9.9570 3.7287 14 1 2.4665 9.7728 3.9181 15 6 4.1414 11.0349 4.3161 16 7 5.4165 11.2594 4.0850 17 14 3.1810 12.1755 5.4414 18 1 2.6459 11.4020 6.5905 19 1 4.0783 13.2477 5.9419 20 1 2.0558 12.7833 4.6867 21 6 3.9936 5.5774 -1.4013 22 6 2.8611 6.1865 -1.9087 23 6 2.8696 6.7028 -3.1910 24 6 4.0077 6.6018 -3.9692 25 6 5.1384 5.9880 -3.4636 26 6 5.1312 5.4756 -2.1798 27 6 1.9209 3.6048 0.0051 28 6 1.2913 2.3751 -0.0001 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 4.0208 0.3801 0.0017 33 1 5.1344 2.5753 0.0000 34 1 2.4558 6.3282 0.4259 35 1 4.9759 6.5508 1.9384 36 1 4.5446 7.5653 0.5409 37 1 2.5387 8.3786 1.7514 38 1 2.9705 7.3639 3.1485 39 1 5.1142 8.5899 3.3754 40 1 4.6818 9.6043 1.9781 41 1 5.8581 12.0176 4.4986 42 1 1.9707 6.2618 -1.3021 43 1 1.9863 7.1827 -3.5858 44 1 4.0134 7.0029 -4.9719 45 1 6.0276 5.9096 -4.0715 46 1 6.0148 4.9961 -1.7849 47 1 1.3340 4.5115 0.0094 48 1 0.2127 2.3201 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182382315.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:07 Heat of formation + Delta-G solvation = 2.142768 kcal Electronic energy + Delta-G solvation = -26410.366476 eV Core-core repulsion = 22815.769585 eV Total energy + Delta-G solvation = -3594.596892 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.48455 -39.57781 -37.76226 -36.18287 -33.85504 -32.18074 -31.28630 -30.91543 -30.10114 -29.98748 -27.67788 -26.26903 -24.78982 -23.20300 -22.41425 -22.16780 -21.86756 -20.48240 -19.98952 -18.31291 -17.26709 -16.50986 -16.17179 -15.92730 -15.72618 -15.54569 -15.12280 -14.84717 -14.51910 -14.39335 -14.01698 -13.79533 -13.70225 -13.40337 -13.26923 -12.89231 -12.79945 -12.49237 -12.22363 -12.15030 -11.85323 -11.67286 -11.49375 -11.28007 -11.03304 -10.99045 -10.85931 -10.78323 -10.55524 -10.50180 -9.68374 -9.34656 -9.06575 -9.06055 -8.98869 -8.81633 -8.31609 -8.25214 -8.13397 -5.96844 -3.98879 1.18048 1.28628 1.34206 1.44243 3.09459 3.35346 3.39392 3.42117 3.63407 3.74982 4.30677 4.49921 4.64055 4.71842 4.76661 4.79619 4.88937 4.89616 4.91317 5.03384 5.03587 5.19371 5.26202 5.31834 5.38832 5.39417 5.43841 5.52373 5.61621 5.82535 5.87207 5.93158 5.95332 5.97569 6.15858 6.28101 6.34284 6.37951 6.41822 6.45099 6.54038 6.65583 6.74448 6.81764 6.91955 7.15829 7.23825 7.32668 7.56186 7.71311 7.86862 8.03711 8.46811 9.08094 9.64835 11.14600 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.010559 B = 0.002773 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.129946 B =10094.319139 C =11801.572985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.119 3.881 4 C -0.152 4.152 5 C -0.074 4.074 6 C -0.092 4.092 7 C 0.166 3.834 8 H 0.093 0.907 9 N -0.677 5.677 10 C 0.059 3.941 11 C -0.106 4.106 12 C 0.023 3.977 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.100 4.100 22 C -0.114 4.114 23 C -0.116 4.116 24 C -0.125 4.125 25 C -0.118 4.118 26 C -0.110 4.110 27 C -0.054 4.054 28 C -0.208 4.208 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.337 0.663 35 H 0.068 0.932 36 H 0.027 0.973 37 H 0.044 0.956 38 H 0.056 0.944 39 H 0.016 0.984 40 H 0.013 0.987 41 H 0.260 0.740 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.023 -20.293 -15.904 26.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.074 3.926 4 C -0.170 4.170 5 C -0.093 4.093 6 C -0.092 4.092 7 C 0.056 3.944 8 H 0.111 0.889 9 N -0.308 5.308 10 C -0.069 4.069 11 C -0.144 4.144 12 C -0.014 4.014 13 C -0.557 4.557 14 H 0.072 0.928 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.102 4.102 22 C -0.132 4.132 23 C -0.134 4.134 24 C -0.143 4.143 25 C -0.136 4.136 26 C -0.129 4.129 27 C -0.072 4.072 28 C -0.226 4.226 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.116 0.884 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.157 0.843 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.032 0.968 41 H 0.070 0.930 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.141 0.859 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.724 -20.742 -15.267 26.383 hybrid contribution -0.633 1.471 -0.184 1.612 sum -6.357 -19.271 -15.451 25.505 Atomic orbital electron populations 1.23028 0.78567 1.03706 1.01410 1.86046 1.21262 1.27206 1.88974 1.19013 0.92376 0.84010 0.97219 1.20321 0.91306 0.98406 1.07007 1.20781 0.99716 0.90915 0.97875 1.19557 0.93613 0.93785 1.02288 1.19391 0.98148 0.89826 0.87062 0.88868 1.60832 1.09899 1.20848 1.39172 1.22171 0.95728 0.91355 0.97657 1.21613 0.98727 0.96530 0.97530 1.19048 0.94498 0.92079 0.95811 1.21217 0.96403 1.10250 1.27838 0.92759 1.25027 0.94908 0.97786 0.96789 1.69960 1.09773 1.29507 1.44366 0.86662 0.79780 0.80439 0.81145 1.20222 1.21321 1.20294 1.20619 0.94120 0.98351 0.97095 1.20923 0.97839 0.98619 0.95815 1.21104 0.98364 0.99554 0.94335 1.21135 0.93499 0.99823 0.99833 1.21131 0.98240 0.98517 0.95748 1.21032 0.97752 0.99868 0.94247 1.20688 0.94025 0.96775 0.95749 1.21196 0.99856 0.92346 1.09231 0.92587 0.92760 0.88443 0.85427 0.85491 0.84261 0.91333 0.95443 0.93770 0.92533 0.96584 0.96837 0.93003 0.86211 0.86112 0.86285 0.86172 0.86095 0.85898 0.85700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.43 10.50 -19.43 -0.20 -3.64 16 3 C 0.12 1.36 6.69 -39.22 -0.26 1.10 16 4 C -0.15 -1.69 9.99 -39.43 -0.39 -2.08 16 5 C -0.07 -0.82 9.66 -39.60 -0.38 -1.21 16 6 C -0.09 -1.10 4.94 -104.60 -0.52 -1.62 16 7 C 0.17 2.08 2.43 -70.02 -0.17 1.91 16 8 H 0.09 1.17 7.52 -51.93 -0.39 0.78 16 9 N -0.68 -9.76 5.68 -109.18 -0.62 -10.38 16 10 C 0.06 1.03 5.48 -3.83 -0.02 1.00 16 11 C -0.11 -2.21 5.41 -26.73 -0.14 -2.36 16 12 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 13 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 14 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 17 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 21 C -0.10 -1.22 4.70 -104.63 -0.49 -1.71 16 22 C -0.11 -1.34 8.90 -39.58 -0.35 -1.69 16 23 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 24 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 25 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 26 C -0.11 -1.26 9.67 -39.59 -0.38 -1.64 16 27 C -0.05 -0.63 9.11 -39.60 -0.36 -0.99 16 28 C -0.21 -2.27 9.04 -39.43 -0.36 -2.62 16 29 H 0.06 0.35 7.66 -51.93 -0.40 -0.04 16 30 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 31 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 33 H 0.13 1.15 8.03 -52.49 -0.42 0.73 16 34 H 0.34 4.57 5.70 -39.29 -0.22 4.35 16 35 H 0.07 1.21 8.06 -51.93 -0.42 0.79 16 36 H 0.03 0.49 8.00 -51.93 -0.42 0.07 16 37 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.12 1.29 6.07 -52.49 -0.32 0.98 16 43 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 46 H 0.12 1.18 8.04 -52.48 -0.42 0.76 16 47 H 0.12 1.34 6.77 -52.48 -0.36 0.98 16 48 H 0.13 1.10 6.30 -52.49 -0.33 0.77 16 LS Contribution 394.63 15.07 5.95 5.95 Total: -1.00 -32.48 394.63 -11.19 -43.66 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -7.44 Total: 3.05 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: -4.59 Total: -28.98 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.12 Total: -36.97 kcal Atomic # 8 Polarization: -3.43 SS G_CDS: -0.20 Total: -3.64 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.48 -11.19 -43.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182382315.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.806 kcal (2) G-P(sol) polarization free energy of solvation -32.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds