Wall clock time and date at job start Tue Mar 31 2020 14:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35902 * 116.99388 * 2 1 4 4 C 1.38736 * 120.05201 * 179.97438 * 3 2 1 5 5 C 1.38150 * 119.94438 * 179.97438 * 4 3 2 6 6 C 1.38265 * 120.05229 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94292 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47060 * 339.99815 * 7 6 5 9 9 N 1.46901 * 109.46921 * 219.99634 * 7 6 5 10 10 C 1.46900 * 110.99890 * 154.99793 * 9 7 6 11 11 C 1.52996 * 109.47450 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47493 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47255 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99871 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00089 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99870 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99938 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47361 * 59.99877 * 17 15 13 19 19 H 1.48503 * 109.46755 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47193 * 299.99294 * 17 15 13 21 21 C 1.50699 * 109.47269 * 99.99668 * 7 6 5 22 22 C 1.38238 * 119.99878 * 79.72917 * 21 7 6 23 23 C 1.38235 * 120.00075 * 179.79104 * 22 21 7 24 24 C 1.38242 * 119.99732 * 0.43751 * 23 22 21 25 25 C 1.38238 * 119.99926 * 359.81296 * 24 23 22 26 26 C 1.38228 * 120.00161 * 260.00106 * 21 7 6 27 27 C 1.38262 * 120.11410 * 0.26790 * 6 5 4 28 28 C 1.38151 * 120.05717 * 359.45944 * 27 6 5 29 29 H 1.08998 * 109.47291 * 299.99550 * 1 2 3 30 30 H 1.09004 * 109.47202 * 60.00313 * 1 2 3 31 31 H 1.09003 * 109.46597 * 179.97438 * 1 2 3 32 32 H 1.07996 * 120.02833 * 359.95544 * 4 3 2 33 33 H 1.07992 * 119.97482 * 180.02562 * 5 4 3 34 34 H 1.00898 * 111.00476 * 278.95183 * 9 7 6 35 35 H 1.09002 * 109.47391 * 300.00224 * 10 9 7 36 36 H 1.09005 * 109.47266 * 59.99895 * 10 9 7 37 37 H 1.09004 * 109.47258 * 300.00035 * 11 10 9 38 38 H 1.08994 * 109.47532 * 59.99762 * 11 10 9 39 39 H 1.08995 * 109.46568 * 300.00030 * 12 11 10 40 40 H 1.09003 * 109.46678 * 59.99669 * 12 11 10 41 41 H 0.96996 * 119.99546 * 180.02562 * 16 15 13 42 42 H 1.08001 * 120.00036 * 359.97438 * 22 21 7 43 43 H 1.07996 * 120.00253 * 180.27384 * 23 22 21 44 44 H 1.08000 * 119.99736 * 179.84001 * 24 23 22 45 45 H 1.07994 * 119.99606 * 180.02562 * 25 24 23 46 46 H 1.08004 * 120.00247 * 359.97438 * 26 21 7 47 47 H 1.08003 * 119.97269 * 179.70728 * 27 6 5 48 48 H 1.08001 * 120.03117 * 180.27447 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2850 0.0005 5 6 4.0560 2.5171 0.0000 6 6 3.3017 3.6759 -0.0005 7 6 3.9858 5.0187 -0.0017 8 1 5.0113 4.9044 0.3495 9 7 3.2629 5.9373 0.8881 10 6 4.1506 6.9975 1.3839 11 6 3.3642 7.9317 2.3055 12 6 4.2886 9.0365 2.8214 13 6 3.5137 9.9570 3.7287 14 1 2.4665 9.7728 3.9181 15 6 4.1414 11.0349 4.3161 16 7 5.4165 11.2594 4.0850 17 14 3.1810 12.1755 5.4414 18 1 2.6459 11.4020 6.5905 19 1 4.0783 13.2477 5.9419 20 1 2.0558 12.7833 4.6867 21 6 3.9936 5.5774 -1.4013 22 6 2.8611 6.1865 -1.9087 23 6 2.8696 6.7028 -3.1910 24 6 4.0077 6.6018 -3.9692 25 6 5.1384 5.9880 -3.4636 26 6 5.1312 5.4756 -2.1798 27 6 1.9209 3.6048 0.0051 28 6 1.2913 2.3751 -0.0001 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 4.0208 0.3801 0.0017 33 1 5.1344 2.5753 0.0000 34 1 2.4558 6.3282 0.4259 35 1 4.9759 6.5508 1.9384 36 1 4.5446 7.5653 0.5409 37 1 2.5387 8.3786 1.7514 38 1 2.9705 7.3639 3.1485 39 1 5.1142 8.5899 3.3754 40 1 4.6818 9.6043 1.9781 41 1 5.8581 12.0176 4.4986 42 1 1.9707 6.2618 -1.3021 43 1 1.9863 7.1827 -3.5858 44 1 4.0134 7.0029 -4.9719 45 1 6.0276 5.9096 -4.0715 46 1 6.0148 4.9961 -1.7849 47 1 1.3340 4.5115 0.0094 48 1 0.2127 2.3201 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182382315.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:04 Heat of formation + Delta-G solvation = -14.571199 kcal Electronic energy + Delta-G solvation = -26411.091248 eV Core-core repulsion = 22815.769585 eV Total energy + Delta-G solvation = -3595.321664 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 2.77 seconds Orbital eigenvalues (eV) -41.33137 -40.40602 -38.59133 -37.40830 -35.62909 -33.86032 -32.13286 -31.78538 -31.44125 -30.88149 -28.53558 -27.75582 -25.95134 -24.53802 -23.38742 -23.20620 -22.81790 -21.93862 -21.19711 -19.08885 -18.50452 -18.12936 -17.22077 -16.76445 -16.60467 -16.55673 -16.45900 -15.99567 -15.91862 -15.53054 -15.08338 -14.79016 -14.57161 -14.39662 -14.23850 -14.16225 -13.87348 -13.72139 -13.46399 -13.32005 -13.21254 -12.82691 -12.72570 -12.54248 -12.46491 -12.26490 -12.15028 -11.88058 -11.79352 -11.65049 -11.51748 -11.38547 -11.11376 -10.54490 -9.90698 -9.83271 -9.71919 -9.42242 -8.98756 -8.19542 -6.30636 0.32579 0.44515 0.50390 0.58584 1.39843 1.43237 1.51079 2.41179 2.41739 2.76849 2.90080 3.13418 3.19248 3.79081 3.85152 3.96786 4.02196 4.05784 4.15015 4.23063 4.27566 4.33490 4.40097 4.40669 4.41480 4.51702 4.59882 4.64040 4.68792 4.72775 4.74992 4.79840 4.98028 5.06968 5.08061 5.13333 5.14449 5.24872 5.31774 5.42985 5.50948 5.55397 5.58611 5.61443 5.68240 5.75788 5.84100 5.86341 6.07828 6.10953 6.27271 6.40221 6.48258 6.86106 7.38451 8.92247 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.010559 B = 0.002773 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.129946 B =10094.319139 C =11801.572985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.110 3.890 4 C -0.162 4.162 5 C -0.079 4.079 6 C -0.104 4.104 7 C 0.172 3.828 8 H 0.090 0.910 9 N -0.675 5.675 10 C 0.076 3.924 11 C -0.091 4.091 12 C 0.027 3.973 13 C -0.543 4.543 14 H 0.060 0.940 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.965 3.035 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.266 1.266 21 C -0.113 4.113 22 C -0.129 4.129 23 C -0.126 4.126 24 C -0.131 4.131 25 C -0.125 4.125 26 C -0.125 4.125 27 C -0.065 4.065 28 C -0.211 4.211 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.119 0.881 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.343 0.657 35 H 0.063 0.937 36 H 0.020 0.980 37 H 0.049 0.951 38 H 0.053 0.947 39 H -0.009 1.009 40 H -0.011 1.011 41 H 0.264 0.736 42 H 0.124 0.876 43 H 0.138 0.862 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.132 0.868 47 H 0.127 0.873 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.343 -20.782 -16.439 27.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.065 3.935 4 C -0.180 4.180 5 C -0.097 4.097 6 C -0.104 4.104 7 C 0.062 3.938 8 H 0.108 0.892 9 N -0.306 5.306 10 C -0.053 4.053 11 C -0.129 4.129 12 C -0.010 4.010 13 C -0.581 4.581 14 H 0.078 0.922 15 C -0.199 4.199 16 N -0.574 5.574 17 Si 0.789 3.211 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.191 1.191 21 C -0.115 4.115 22 C -0.147 4.147 23 C -0.143 4.143 24 C -0.149 4.149 25 C -0.143 4.143 26 C -0.143 4.143 27 C -0.083 4.083 28 C -0.230 4.230 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.137 0.863 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.164 0.836 35 H 0.082 0.918 36 H 0.038 0.962 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.009 0.991 40 H 0.007 0.993 41 H 0.072 0.928 42 H 0.142 0.858 43 H 0.156 0.844 44 H 0.159 0.841 45 H 0.159 0.841 46 H 0.150 0.850 47 H 0.145 0.855 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.063 -21.254 -15.815 27.417 hybrid contribution -0.231 1.556 -0.075 1.575 sum -7.294 -19.698 -15.889 26.338 Atomic orbital electron populations 1.23306 0.76713 1.05442 1.02060 1.86029 1.23258 1.26887 1.88844 1.19214 0.92754 0.84529 0.97049 1.20560 0.91657 0.98897 1.06897 1.20984 1.00605 0.90665 0.97465 1.19571 0.93954 0.93614 1.03306 1.19314 0.97758 0.89632 0.87054 0.89152 1.60743 1.09681 1.19776 1.40364 1.21819 0.95405 0.91417 0.96662 1.21354 0.97954 0.95494 0.98056 1.18942 0.94557 0.93111 0.94424 1.21670 0.96942 1.11059 1.28453 0.92220 1.25996 0.95928 0.99583 0.98409 1.70097 1.11544 1.30276 1.45502 0.85502 0.78419 0.78110 0.79038 1.19171 1.20794 1.19108 1.20623 0.94777 0.99102 0.96970 1.21091 0.97996 0.99093 0.96518 1.21402 0.99366 0.99451 0.94129 1.21485 0.93201 0.99352 1.00830 1.21452 0.99198 0.97988 0.95663 1.21280 0.97980 1.00235 0.94812 1.20822 0.94071 0.97332 0.96069 1.21395 1.00890 0.91903 1.08775 0.92102 0.91884 0.86294 0.84226 0.83959 0.83619 0.91801 0.96181 0.93224 0.92781 0.99062 0.99287 0.92778 0.85819 0.84403 0.84065 0.84086 0.85002 0.85548 0.83880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -6.78 10.50 -92.44 -0.97 -7.75 16 3 C 0.11 2.41 6.69 22.51 0.15 2.56 16 4 C -0.16 -3.46 9.99 22.37 0.22 -3.24 16 5 C -0.08 -1.69 9.66 22.26 0.22 -1.48 16 6 C -0.10 -2.44 4.94 -19.85 -0.10 -2.54 16 7 C 0.17 4.28 2.43 43.42 0.11 4.39 16 8 H 0.09 2.26 7.52 -2.39 -0.02 2.24 16 9 N -0.67 -19.30 5.68 -499.35 -2.84 -22.14 16 10 C 0.08 2.66 5.48 86.30 0.47 3.14 16 11 C -0.09 -3.82 5.41 30.59 0.17 -3.65 16 12 C 0.03 1.48 4.97 29.85 0.15 1.62 16 13 C -0.54 -31.60 9.11 25.60 0.23 -31.37 16 14 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 15 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 16 N -0.93 -57.80 13.29 21.45 0.28 -57.51 16 17 Si 0.97 44.87 29.54 68.60 2.03 46.89 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 C -0.11 -2.71 4.70 -19.87 -0.09 -2.81 16 22 C -0.13 -2.97 8.90 22.27 0.20 -2.77 16 23 C -0.13 -2.60 10.05 22.27 0.22 -2.38 16 24 C -0.13 -2.53 10.05 22.27 0.22 -2.30 16 25 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 26 C -0.12 -2.76 9.67 22.27 0.22 -2.54 16 27 C -0.06 -1.47 9.11 22.25 0.20 -1.26 16 28 C -0.21 -4.39 9.04 22.37 0.20 -4.19 16 29 H 0.06 0.67 7.66 -2.39 -0.02 0.65 16 30 H 0.06 0.64 7.66 -2.39 -0.02 0.62 16 31 H 0.12 0.87 8.14 -2.39 -0.02 0.86 16 32 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 33 H 0.14 2.48 8.03 -2.91 -0.02 2.45 16 34 H 0.34 9.16 5.70 -89.70 -0.51 8.65 16 35 H 0.06 2.29 8.06 -2.39 -0.02 2.27 16 36 H 0.02 0.73 8.00 -2.38 -0.02 0.71 16 37 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 39 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 40 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 41 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 42 H 0.12 2.62 6.07 -2.91 -0.02 2.60 16 43 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 44 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 45 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 46 H 0.13 2.49 8.04 -2.91 -0.02 2.46 16 47 H 0.13 2.68 6.77 -2.91 -0.02 2.66 16 48 H 0.14 2.31 6.30 -2.91 -0.02 2.29 16 Total: -1.00 -69.67 394.63 3.52 -66.15 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.43 Total: 23.72 kcal Atomic # 6 Polarization: -53.95 SS G_CDS: 4.59 Total: -49.36 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -2.55 Total: -79.65 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.97 Total: -7.75 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -69.67 3.52 -66.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182382315.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.578 kcal (2) G-P(sol) polarization free energy of solvation -69.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.77 seconds