Wall clock time and date at job start Tue Mar 31 2020 16:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38150 * 119.97244 * 2 1 4 4 C 1.38796 * 119.93591 * 179.97438 * 3 2 1 5 5 N 1.40228 * 120.06369 * 180.02562 * 4 3 2 6 6 C 1.37103 * 126.47641 * 179.97438 * 5 4 3 7 7 C 1.34653 * 106.83699 * 180.02562 * 6 5 4 8 8 N 1.34125 * 108.19520 * 359.97438 * 7 6 5 9 9 C 1.30523 * 109.35340 * 359.72525 * 8 7 6 10 10 C 1.38837 * 119.87248 * 359.97438 * 4 3 2 11 11 C 1.38104 * 119.93477 * 359.72485 * 10 4 3 12 12 C 1.38255 * 119.96922 * 179.97438 * 2 1 3 13 13 C 1.50704 * 119.92952 * 0.02663 * 12 2 1 14 14 N 1.46502 * 109.46985 * 186.33281 * 13 12 2 15 15 C 1.36938 * 120.00030 * 268.60554 * 14 13 12 16 16 H 1.07998 * 120.00405 * 142.64316 * 15 14 13 17 17 C 1.38810 * 119.99626 * 322.64211 * 15 14 13 18 18 N 1.31621 * 119.99790 * 157.72048 * 17 15 14 19 19 Si 1.86805 * 120.00272 * 337.72268 * 17 15 14 20 20 H 1.48498 * 109.46930 * 95.33492 * 19 17 15 21 21 H 1.48498 * 109.46919 * 215.33574 * 19 17 15 22 22 H 1.48495 * 109.47034 * 335.33685 * 19 17 15 23 23 C 1.46502 * 120.00304 * 88.60307 * 14 13 12 24 24 C 1.54963 * 110.92438 * 122.12912 * 23 14 13 25 25 C 1.54264 * 104.16171 * 156.30052 * 24 23 14 26 26 C 1.53877 * 106.63888 * 336.44325 * 25 24 23 27 27 C 1.54268 * 106.59651 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47357 * 273.26127 * 1 2 3 29 29 H 1.09002 * 109.47099 * 33.25395 * 1 2 3 30 30 H 1.08994 * 109.47386 * 153.25395 * 1 2 3 31 31 H 1.07999 * 120.03125 * 359.97438 * 3 2 1 32 32 H 1.08006 * 126.57953 * 359.97438 * 6 5 4 33 33 H 1.07997 * 125.90301 * 180.02562 * 7 6 5 34 34 H 1.07996 * 125.72034 * 180.26672 * 9 8 7 35 35 H 1.08001 * 120.03535 * 179.97438 * 10 4 3 36 36 H 1.07998 * 119.97335 * 180.27910 * 11 10 4 37 37 H 1.08993 * 109.47648 * 66.33458 * 13 12 2 38 38 H 1.09002 * 109.47481 * 306.32785 * 13 12 2 39 39 H 0.97005 * 119.99891 * 179.97438 * 18 17 15 40 40 H 1.09003 * 110.67150 * 358.82496 * 23 14 13 41 41 H 1.08999 * 110.47687 * 37.64073 * 24 23 14 42 42 H 1.09008 * 110.53156 * 274.97680 * 24 23 14 43 43 H 1.09004 * 110.03349 * 217.13887 * 25 24 23 44 44 H 1.08993 * 110.03746 * 95.75396 * 25 24 23 45 45 H 1.08996 * 110.03065 * 119.26264 * 26 25 24 46 46 H 1.08994 * 110.03315 * 240.64737 * 26 25 24 47 47 H 1.09005 * 110.48301 * 142.28909 * 27 26 25 48 48 H 1.09004 * 110.48794 * 264.79796 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1971 1.1967 0.0000 4 6 3.5850 1.1959 0.0005 5 7 4.2883 2.4090 0.0011 6 6 5.6509 2.5613 0.0021 7 6 5.8953 3.8854 0.0029 8 7 4.7184 4.5286 0.0018 9 6 3.7483 3.6554 -0.0056 10 6 4.2758 -0.0085 0.0016 11 6 3.5805 -1.2017 0.0079 12 6 2.1975 -1.1977 0.0005 13 6 1.4417 -2.5015 0.0005 14 7 2.3844 -3.6124 0.1535 15 6 2.9167 -4.2162 -0.9544 16 1 3.9444 -4.5483 -0.9472 17 6 2.1354 -4.4015 -2.0866 18 7 2.7067 -4.5596 -3.2618 19 14 0.2731 -4.4262 -1.9426 20 1 -0.2640 -3.0730 -2.2349 21 1 -0.2855 -5.4010 -2.9137 22 1 -0.1116 -4.8244 -0.5647 23 6 2.7578 -4.0774 1.4916 24 6 2.4241 -5.5803 1.6684 25 6 3.3761 -6.0492 2.7880 26 6 4.5654 -5.0727 2.7927 27 6 4.2954 -4.0441 1.6752 28 1 -0.3634 0.0585 1.0260 29 1 -0.3633 0.8594 -0.5635 30 1 -0.3634 -0.9177 -0.4625 31 1 1.6572 2.1321 -0.0004 32 1 6.3868 1.7708 0.0031 33 1 6.8706 4.3494 0.0034 34 1 2.6931 3.8853 -0.0123 35 1 5.3558 -0.0122 0.0016 36 1 4.1172 -2.1389 0.0133 37 1 0.9030 -2.6092 -0.9408 38 1 0.7324 -2.5104 0.8281 39 1 2.1607 -4.6894 -4.0530 40 1 2.2642 -3.4800 2.2582 41 1 2.6220 -6.1260 0.7458 42 1 1.3852 -5.7080 1.9728 43 1 3.7249 -7.0612 2.5821 44 1 2.8647 -6.0193 3.7500 45 1 4.6304 -4.5683 3.7568 46 1 5.4912 -5.6109 2.5900 47 1 4.6213 -3.0509 1.9841 48 1 4.7981 -4.3403 0.7545 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192034558.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:52 Heat of formation + Delta-G solvation = 107.389538 kcal Electronic energy + Delta-G solvation = -28026.032196 eV Core-core repulsion = 24468.291898 eV Total energy + Delta-G solvation = -3557.740298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.22614 -39.41622 -37.83103 -35.25040 -33.90236 -32.19068 -31.62453 -30.12948 -29.26485 -28.09467 -27.34521 -26.70509 -25.64181 -23.28521 -22.26169 -22.04418 -20.43854 -20.06025 -19.65702 -19.35702 -18.03441 -16.78998 -15.74119 -15.61477 -15.39752 -15.19109 -14.97299 -14.57627 -14.39016 -13.93884 -13.75692 -13.52581 -13.42765 -13.27216 -12.79548 -12.74265 -12.67175 -12.45721 -12.17976 -12.07604 -11.66016 -11.39740 -10.99383 -10.95189 -10.77543 -10.63644 -10.57425 -10.49418 -10.42293 -10.09066 -10.04695 -9.92347 -9.84314 -9.50122 -8.67249 -8.61039 -8.55159 -7.80694 -6.96288 -6.10364 -3.53878 1.09694 1.58958 2.44224 2.76851 3.11178 3.17947 3.37922 3.40502 4.01909 4.39952 4.59251 4.67773 4.75734 4.89305 5.04199 5.13620 5.21472 5.24893 5.31206 5.36439 5.39413 5.49131 5.51072 5.60976 5.71044 5.73296 5.92351 5.95542 5.99421 6.05179 6.07877 6.11611 6.17705 6.25765 6.26324 6.30833 6.37720 6.43603 6.44223 6.55917 6.58505 6.70164 6.74361 6.88404 6.91371 7.03325 7.10369 7.17724 7.39868 7.94705 7.98499 8.27890 8.86901 9.59466 9.98080 11.04519 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.012393 B = 0.004121 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.847526 B = 6792.991278 C = 7815.997258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.072 4.072 3 C -0.138 4.138 4 C 0.108 3.892 5 N -0.399 5.399 6 C -0.050 4.050 7 C -0.033 4.033 8 N -0.493 5.493 9 C 0.182 3.818 10 C -0.140 4.140 11 C -0.055 4.055 12 C -0.083 4.083 13 C 0.168 3.832 14 N -0.595 5.595 15 C -0.268 4.268 16 H 0.085 0.915 17 C 0.041 3.959 18 N -0.894 5.894 19 Si 0.866 3.134 20 H -0.286 1.286 21 H -0.300 1.300 22 H -0.265 1.265 23 C 0.173 3.827 24 C -0.135 4.135 25 C -0.121 4.121 26 C -0.120 4.120 27 C -0.137 4.137 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.122 0.878 32 H 0.176 0.824 33 H 0.171 0.829 34 H 0.205 0.795 35 H 0.122 0.878 36 H 0.156 0.844 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.264 0.736 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.048 0.952 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.051 0.949 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.084 7.348 9.815 12.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.073 4.073 3 C -0.157 4.157 4 C 0.016 3.984 5 N -0.076 5.076 6 C -0.182 4.182 7 C -0.179 4.179 8 N -0.210 5.210 9 C -0.099 4.099 10 C -0.160 4.160 11 C -0.073 4.073 12 C -0.086 4.086 13 C 0.042 3.958 14 N -0.314 5.314 15 C -0.396 4.396 16 H 0.102 0.898 17 C -0.160 4.160 18 N -0.534 5.534 19 Si 0.696 3.304 20 H -0.214 1.214 21 H -0.228 1.228 22 H -0.190 1.190 23 C 0.066 3.934 24 C -0.175 4.175 25 C -0.159 4.159 26 C -0.159 4.159 27 C -0.176 4.176 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.140 0.860 32 H 0.193 0.807 33 H 0.189 0.811 34 H 0.221 0.779 35 H 0.140 0.860 36 H 0.173 0.827 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.100 0.900 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.065 8.069 9.626 12.561 hybrid contribution -0.872 -0.883 -0.210 1.259 sum -0.937 7.186 9.416 11.881 Atomic orbital electron populations 1.20805 0.91137 1.03107 1.02188 1.19579 0.95984 0.91916 0.99815 1.20444 0.91048 0.98391 1.05850 1.17748 0.91376 0.83572 1.05672 1.43217 1.06497 1.06154 1.51713 1.22787 0.84227 0.99759 1.11407 1.22281 0.97239 0.90235 1.08190 1.70287 0.98659 1.32632 1.19463 1.25144 1.00270 0.78618 1.05917 1.20890 0.99763 0.90870 1.04437 1.21329 0.94089 0.97895 0.93984 1.21115 0.94945 0.95941 0.96648 1.20295 0.91439 0.84003 1.00021 1.44149 1.52188 1.33073 1.02024 1.18627 0.95713 1.35776 0.89461 0.89787 1.25447 0.97268 0.97736 0.95544 1.69853 1.35454 1.50187 0.97925 0.87096 0.88525 0.76695 0.78067 1.21381 1.22824 1.19004 1.21413 0.92941 0.92728 0.86347 1.22755 0.97295 0.98793 0.98627 1.22050 0.96660 0.98611 0.98617 1.22041 0.97928 0.97329 0.98560 1.22786 0.98968 0.97338 0.98537 0.91062 0.91636 0.91083 0.86008 0.80709 0.81150 0.77891 0.85999 0.82683 0.90946 0.92617 0.92630 0.92478 0.89964 0.93292 0.92704 0.93040 0.92967 0.92684 0.92983 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 9.54 36.00 0.34 -1.13 16 2 C -0.07 -1.10 5.88 -104.65 -0.62 -1.71 16 3 C -0.14 -1.95 9.13 -39.41 -0.36 -2.31 16 4 C 0.11 1.62 6.63 -83.59 -0.55 1.06 16 5 N -0.40 -5.64 2.99 -62.10 -0.19 -5.83 16 6 C -0.05 -0.65 10.86 -16.46 -0.18 -0.83 16 7 C -0.03 -0.43 11.85 -17.82 -0.21 -0.64 16 8 N -0.49 -7.27 11.24 -14.48 -0.16 -7.43 16 9 C 0.18 2.45 11.92 -89.63 -1.07 1.38 16 10 C -0.14 -2.20 9.47 -39.41 -0.37 -2.57 16 11 C -0.05 -0.96 9.18 -39.61 -0.36 -1.33 16 12 C -0.08 -1.48 5.88 -104.59 -0.61 -2.09 16 13 C 0.17 3.24 3.39 -5.19 -0.02 3.22 16 14 N -0.59 -12.14 1.06 -164.71 -0.17 -12.31 16 15 C -0.27 -6.52 7.54 -15.06 -0.11 -6.63 16 16 H 0.08 2.23 6.65 -52.49 -0.35 1.88 16 17 C 0.04 1.09 5.30 -17.43 -0.09 0.99 16 18 N -0.89 -25.52 13.97 55.49 0.78 -24.74 16 19 Si 0.87 20.39 25.03 -169.99 -4.26 16.14 16 20 H -0.29 -6.53 6.67 56.52 0.38 -6.15 16 21 H -0.30 -7.37 7.11 56.52 0.40 -6.96 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 C 0.17 3.03 3.34 -65.90 -0.22 2.81 16 24 C -0.14 -2.33 6.39 -25.03 -0.16 -2.49 16 25 C -0.12 -1.72 6.80 -25.61 -0.17 -1.90 16 26 C -0.12 -1.67 6.80 -25.61 -0.17 -1.85 16 27 C -0.14 -2.21 5.07 -25.07 -0.13 -2.34 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 30 H 0.07 0.99 6.69 -51.93 -0.35 0.65 16 31 H 0.12 1.39 6.77 -52.49 -0.36 1.04 16 32 H 0.18 1.84 7.15 -52.48 -0.38 1.46 16 33 H 0.17 1.72 8.06 -52.49 -0.42 1.29 16 34 H 0.20 2.07 7.07 -52.49 -0.37 1.70 16 35 H 0.12 1.68 6.82 -52.49 -0.36 1.32 16 36 H 0.16 2.96 4.66 -52.49 -0.24 2.72 16 37 H 0.07 1.56 2.96 -51.93 -0.15 1.41 16 38 H 0.06 0.96 7.81 -51.93 -0.41 0.56 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.06 0.94 7.90 -51.93 -0.41 0.53 16 41 H 0.08 1.64 7.24 -51.93 -0.38 1.26 16 42 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.05 0.79 7.87 -51.93 -0.41 0.39 16 48 H 0.08 1.44 6.38 -51.93 -0.33 1.11 16 LS Contribution 369.46 15.07 5.57 5.57 Total: -1.00 -28.83 369.46 -10.54 -39.36 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -7.03 Total: 7.59 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -5.08 Total: -18.34 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 0.25 Total: -50.32 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.26 Total: 16.14 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.83 -10.54 -39.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192034558.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.754 kcal (2) G-P(sol) polarization free energy of solvation -28.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds