Wall clock time and date at job start Tue Mar 31 2020 15:11:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86792 * 120.00196 * 2 1
4 4 H 1.48504 * 109.46931 * 269.99605 * 3 2 1
5 5 H 1.48498 * 109.47354 * 29.99281 * 3 2 1
6 6 H 1.48494 * 109.47740 * 149.99980 * 3 2 1
7 7 C 1.37877 * 119.99669 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99740 * 179.97438 * 7 2 1
9 9 C 1.50697 * 120.00254 * 0.02562 * 7 2 1
10 10 C 1.53003 * 109.47440 * 179.97438 * 9 7 2
11 11 C 1.52997 * 109.47199 * 179.97438 * 10 9 7
12 12 N 1.46908 * 109.46751 * 180.02562 * 11 10 9
13 13 C 1.46954 * 110.99966 * 46.20485 * 12 11 10
14 14 C 1.53057 * 109.36263 * 183.18687 * 13 12 11
15 15 N 1.46956 * 109.36162 * 301.59585 * 14 13 12
16 16 C 1.38683 * 110.99497 * 183.18903 * 15 14 13
17 17 C 1.40256 * 119.22528 * 179.73377 * 16 15 14
18 18 C 1.36212 * 119.87456 * 179.73885 * 17 16 15
19 19 C 1.41015 * 118.28697 * 0.49770 * 18 17 16
20 20 C 1.40342 * 121.24328 * 179.79005 * 19 18 17
21 21 C 1.36206 * 119.63899 * 179.97438 * 20 19 18
22 22 C 1.39294 * 120.84682 * 0.02562 * 21 20 19
23 23 C 1.36132 * 121.03113 * 359.97438 * 22 21 20
24 24 C 1.40541 * 119.76285 * 0.02562 * 23 22 21
25 25 N 1.31709 * 119.23254 * 0.02562 * 16 15 14
26 26 C 1.46954 * 110.88042 * 59.32472 * 15 14 13
27 27 C 1.46956 * 110.99532 * 170.00080 * 12 11 10
28 28 H 0.96998 * 120.00161 * 0.02562 * 1 2 3
29 29 H 1.08999 * 109.47549 * 59.99608 * 9 7 2
30 30 H 1.09001 * 109.47162 * 299.99405 * 9 7 2
31 31 H 1.09008 * 109.46570 * 59.99717 * 10 9 7
32 32 H 1.08994 * 109.46969 * 300.00418 * 10 9 7
33 33 H 1.08997 * 109.46936 * 60.00273 * 11 10 9
34 34 H 1.09001 * 109.47500 * 299.99901 * 11 10 9
35 35 H 1.08997 * 109.49355 * 63.21813 * 13 12 11
36 36 H 1.09004 * 109.48943 * 303.15264 * 13 12 11
37 37 H 1.09002 * 109.48707 * 181.63135 * 14 13 12
38 38 H 1.09002 * 109.48655 * 61.56567 * 14 13 12
39 39 H 1.08000 * 120.05984 * 359.97438 * 17 16 15
40 40 H 1.08003 * 120.85255 * 180.25990 * 18 17 16
41 41 H 1.08000 * 120.18131 * 359.95317 * 20 19 18
42 42 H 1.08000 * 119.57639 * 180.02562 * 21 20 19
43 43 H 1.07998 * 119.48514 * 179.97438 * 22 21 20
44 44 H 1.07996 * 120.11888 * 180.02562 * 23 22 21
45 45 H 1.08997 * 109.49355 * 60.64341 * 26 15 14
46 46 H 1.09003 * 109.49032 * 180.68883 * 26 15 14
47 47 H 1.09002 * 109.48908 * 56.84799 * 27 12 11
48 48 H 1.09002 * 109.49369 * 296.77670 * 27 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6176 0.0000
4 1 2.4967 2.0462 -1.4001
5 1 1.4466 2.6527 0.6999
6 1 3.5467 1.4402 0.7000
7 6 2.0044 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2509 -2.4992 0.0005
10 6 2.2451 -3.6622 0.0005
11 6 1.4801 -4.9871 0.0012
12 7 2.4347 -6.1037 0.0018
13 6 3.4986 -5.8865 0.9920
14 6 4.5129 -7.0295 0.9061
15 7 3.8281 -8.3076 1.1450
16 6 4.7293 -9.3616 1.1456
17 6 4.2588 -10.6647 1.3643
18 6 5.1317 -11.7104 1.3624
19 6 6.4988 -11.4394 1.1476
20 6 7.4522 -12.4692 1.1375
21 6 8.7642 -12.1704 0.9264
22 6 9.1729 -10.8548 0.7208
23 6 8.2745 -9.8321 0.7243
24 6 6.9119 -10.1013 0.9388
25 7 6.0077 -9.1150 0.9464
26 6 2.7642 -8.5248 0.1547
27 6 1.7499 -7.3818 0.2406
28 1 -0.4850 0.8400 -0.0004
29 1 0.6246 -2.5571 -0.8896
30 1 0.6240 -2.5567 0.8903
31 1 2.8718 -3.6043 0.8906
32 1 2.8718 -3.6044 -0.8894
33 1 0.8532 -5.0451 -0.8886
34 1 0.8537 -5.0446 0.8914
35 1 3.0650 -5.8594 1.9917
36 1 3.9989 -4.9401 0.7866
37 1 5.2875 -6.8856 1.6594
38 1 4.9664 -7.0394 -0.0850
39 1 3.2060 -10.8390 1.5303
40 1 4.7860 -12.7207 1.5250
41 1 7.1472 -13.4930 1.2965
42 1 9.4969 -12.9638 0.9184
43 1 10.2190 -10.6428 0.5559
44 1 8.6076 -8.8176 0.5629
45 1 3.1978 -8.5519 -0.8449
46 1 2.2641 -9.4714 0.3599
47 1 0.9753 -7.5257 -0.5126
48 1 1.2964 -7.3718 1.2318
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000267349523.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:11:58
Heat of formation + Delta-G solvation = 68.825114 kcal
Electronic energy + Delta-G solvation = -26370.112587 eV
Core-core repulsion = 22810.700010 eV
Total energy + Delta-G solvation = -3559.412577 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 325.185 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-41.29603 -39.54558 -37.52841 -35.48302 -33.81579 -33.44218 -31.57863 -31.15668
-30.18657 -29.84871 -27.48083 -25.38240 -24.69427 -23.17817 -23.14737 -22.29001
-22.05209 -20.24850 -19.50724 -18.40673 -17.58653 -17.43622 -16.30402 -15.64777
-15.26037 -15.12748 -15.03908 -14.66785 -14.60773 -14.52976 -14.31885 -14.26342
-14.04668 -13.50308 -13.36031 -13.25098 -12.37819 -12.30275 -11.99231 -11.89537
-11.78858 -11.60920 -11.40243 -11.27226 -11.21248 -10.88905 -10.81915 -10.80635
-10.49553 -10.34456 -9.79285 -9.67859 -9.58266 -9.32483 -9.03264 -8.70485
-8.32448 -8.15249 -8.06977 -5.97824 -3.99785 0.16036 0.58041 1.74594
2.59171 3.32010 3.33841 3.39861 3.43537 3.86495 4.08097 4.09062
4.34000 4.48583 4.51940 4.56413 4.66186 4.82232 4.86555 4.96036
5.00967 5.10966 5.15196 5.24810 5.38038 5.44799 5.47093 5.51042
5.57725 5.67689 5.71137 5.73382 5.77809 5.86693 5.89808 6.06134
6.07107 6.10212 6.15433 6.20295 6.29885 6.45527 6.58818 6.69256
6.76552 6.96308 7.08581 7.32735 7.36445 7.69719 7.78162 7.84429
8.02330 8.45522 9.07245 9.64090 11.13587
Molecular weight = 325.18amu
Principal moments of inertia in cm(-1)
A = 0.022927 B = 0.002056 C = 0.001905
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1220.972110 B =13616.947321 C =14692.228383
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.055 3.945
3 Si 0.892 3.108
4 H -0.281 1.281
5 H -0.287 1.287
6 H -0.274 1.274
7 C -0.518 4.518
8 H 0.055 0.945
9 C 0.022 3.978
10 C -0.112 4.112
11 C 0.057 3.943
12 N -0.542 5.542
13 C 0.047 3.953
14 C 0.072 3.928
15 N -0.479 5.479
16 C 0.349 3.651
17 C -0.177 4.177
18 C -0.042 4.042
19 C -0.130 4.130
20 C -0.087 4.087
21 C -0.133 4.133
22 C -0.096 4.096
23 C -0.102 4.102
24 C 0.159 3.841
25 N -0.518 5.518
26 C 0.065 3.935
27 C 0.055 3.945
28 H 0.260 0.740
29 H 0.016 0.984
30 H 0.014 0.986
31 H 0.050 0.950
32 H 0.056 0.944
33 H 0.072 0.928
34 H 0.030 0.970
35 H 0.040 0.960
36 H 0.098 0.902
37 H 0.088 0.912
38 H 0.060 0.940
39 H 0.139 0.861
40 H 0.140 0.860
41 H 0.127 0.873
42 H 0.124 0.876
43 H 0.127 0.873
44 H 0.134 0.866
45 H 0.056 0.944
46 H 0.085 0.915
47 H 0.085 0.915
48 H 0.043 0.957
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.638 -28.993 2.344 31.715
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.536 5.536
2 C -0.146 4.146
3 Si 0.720 3.280
4 H -0.207 1.207
5 H -0.213 1.213
6 H -0.199 1.199
7 C -0.556 4.556
8 H 0.073 0.927
9 C -0.015 4.015
10 C -0.150 4.150
11 C -0.070 4.070
12 N -0.267 5.267
13 C -0.081 4.081
14 C -0.055 4.055
15 N -0.196 5.196
16 C 0.102 3.898
17 C -0.198 4.198
18 C -0.068 4.068
19 C -0.133 4.133
20 C -0.105 4.105
21 C -0.151 4.151
22 C -0.116 4.116
23 C -0.121 4.121
24 C 0.037 3.963
25 N -0.233 5.233
26 C -0.061 4.061
27 C -0.074 4.074
28 H 0.069 0.931
29 H 0.034 0.966
30 H 0.032 0.968
31 H 0.069 0.931
32 H 0.075 0.925
33 H 0.091 0.909
34 H 0.049 0.951
35 H 0.059 0.941
36 H 0.116 0.884
37 H 0.106 0.894
38 H 0.079 0.921
39 H 0.157 0.843
40 H 0.158 0.842
41 H 0.145 0.855
42 H 0.142 0.858
43 H 0.145 0.855
44 H 0.152 0.848
45 H 0.075 0.925
46 H 0.103 0.897
47 H 0.103 0.897
48 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges 12.785 -27.973 2.190 30.834
hybrid contribution 0.008 0.135 0.395 0.418
sum 12.793 -27.838 2.586 30.746
Atomic orbital electron populations
1.69964 1.06043 1.26536 1.51017 1.25031 0.94860 0.99265 0.95410
0.86595 0.79842 0.83483 0.78091 1.20673 1.21278 1.19888 1.21243
0.93026 0.91038 1.50330 0.92699 1.19068 0.93999 0.91333 0.97146
1.21793 0.99380 0.93055 1.00789 1.22289 0.93925 0.90384 1.00377
1.62307 1.13233 1.02228 1.48891 1.22379 0.93103 0.98541 0.94063
1.22135 0.95647 0.85520 1.02212 1.59163 1.11387 1.02299 1.46749
1.20050 0.88913 0.90130 0.90671 1.21395 1.01619 0.91820 1.05005
1.21335 0.91638 0.99490 0.94297 1.18779 0.94519 0.94595 1.05409
1.20936 0.92870 0.98147 0.98595 1.20857 0.96102 0.96766 1.01365
1.20895 0.99825 0.92558 0.98330 1.20796 0.90492 1.00243 1.00612
1.18664 0.93482 0.87957 0.96216 1.68060 1.01619 1.35006 1.18651
1.22332 0.91521 0.99312 0.92909 1.22160 0.95370 0.89114 1.00758
0.93058 0.96559 0.96776 0.93120 0.92527 0.90950 0.95134 0.94142
0.88438 0.89408 0.92127 0.84285 0.84217 0.85535 0.85772 0.85459
0.84823 0.92541 0.89673 0.89696 0.93866
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16
2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16
3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16
4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16
5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16
7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16
8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16
9 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16
10 C -0.11 -2.33 4.42 -26.73 -0.12 -2.44 16
11 C 0.06 0.99 5.28 -3.82 -0.02 0.97 16
12 N -0.54 -8.17 4.86 -234.46 -1.14 -9.31 16
13 C 0.05 0.70 4.93 -3.77 -0.02 0.68 16
14 C 0.07 0.97 4.77 -3.76 -0.02 0.95 16
15 N -0.48 -5.93 4.72 -172.96 -0.82 -6.75 16
16 C 0.35 4.25 6.40 -155.49 -1.00 3.25 16
17 C -0.18 -1.68 9.11 -39.55 -0.36 -2.04 16
18 C -0.04 -0.35 9.88 -39.26 -0.39 -0.74 16
19 C -0.13 -1.29 5.74 -106.77 -0.61 -1.90 16
20 C -0.09 -0.66 9.77 -39.52 -0.39 -1.04 16
21 C -0.13 -0.93 9.96 -39.92 -0.40 -1.33 16
22 C -0.10 -0.75 9.94 -39.95 -0.40 -1.14 16
23 C -0.10 -1.03 9.98 -39.47 -0.39 -1.42 16
24 C 0.16 1.89 6.60 -84.86 -0.56 1.33 16
25 N -0.52 -6.87 8.61 -10.21 -0.09 -6.96 16
26 C 0.07 0.71 5.36 -3.77 -0.02 0.69 16
27 C 0.05 0.67 5.58 -3.76 -0.02 0.65 16
28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
30 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16
31 H 0.05 1.03 6.26 -51.92 -0.33 0.70 16
32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16
33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16
34 H 0.03 0.54 8.08 -51.93 -0.42 0.12 16
35 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16
36 H 0.10 1.52 5.99 -51.93 -0.31 1.21 16
37 H 0.09 1.20 7.81 -51.93 -0.41 0.80 16
38 H 0.06 0.88 8.04 -51.93 -0.42 0.46 16
39 H 0.14 1.02 7.15 -52.49 -0.38 0.65 16
40 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16
41 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16
42 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16
43 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16
44 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16
45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
46 H 0.08 0.71 6.75 -51.93 -0.35 0.36 16
47 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16
48 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16
LS Contribution 381.14 15.07 5.74 5.74
Total: -1.00 -32.38 381.14 -13.48 -45.87
By element:
Atomic # 1 Polarization: 5.33 SS G_CDS: -7.64 Total: -2.31 kcal
Atomic # 6 Polarization: -11.48 SS G_CDS: -5.26 Total: -16.74 kcal
Atomic # 7 Polarization: -48.14 SS G_CDS: -1.31 Total: -49.45 kcal
Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -32.38 -13.48 -45.87 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000267349523.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 114.692 kcal
(2) G-P(sol) polarization free energy of solvation -32.383 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.309 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.484 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.867 kcal
(6) G-S(sol) free energy of system = (1) + (5) 68.825 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds