Wall clock time and date at job start Tue Mar 31 2020 15:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 120.00196 * 2 1 4 4 H 1.48504 * 109.46931 * 269.99605 * 3 2 1 5 5 H 1.48498 * 109.47354 * 29.99281 * 3 2 1 6 6 H 1.48494 * 109.47740 * 149.99980 * 3 2 1 7 7 C 1.37877 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99740 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00254 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47440 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47199 * 179.97438 * 10 9 7 12 12 N 1.46908 * 109.46751 * 180.02562 * 11 10 9 13 13 C 1.46954 * 110.99966 * 46.20485 * 12 11 10 14 14 C 1.53057 * 109.36263 * 183.18687 * 13 12 11 15 15 N 1.46956 * 109.36162 * 301.59585 * 14 13 12 16 16 C 1.38683 * 110.99497 * 183.18903 * 15 14 13 17 17 C 1.40256 * 119.22528 * 179.73377 * 16 15 14 18 18 C 1.36212 * 119.87456 * 179.73885 * 17 16 15 19 19 C 1.41015 * 118.28697 * 0.49770 * 18 17 16 20 20 C 1.40342 * 121.24328 * 179.79005 * 19 18 17 21 21 C 1.36206 * 119.63899 * 179.97438 * 20 19 18 22 22 C 1.39294 * 120.84682 * 0.02562 * 21 20 19 23 23 C 1.36132 * 121.03113 * 359.97438 * 22 21 20 24 24 C 1.40541 * 119.76285 * 0.02562 * 23 22 21 25 25 N 1.31709 * 119.23254 * 0.02562 * 16 15 14 26 26 C 1.46954 * 110.88042 * 59.32472 * 15 14 13 27 27 C 1.46956 * 110.99532 * 170.00080 * 12 11 10 28 28 H 0.96998 * 120.00161 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47549 * 59.99608 * 9 7 2 30 30 H 1.09001 * 109.47162 * 299.99405 * 9 7 2 31 31 H 1.09008 * 109.46570 * 59.99717 * 10 9 7 32 32 H 1.08994 * 109.46969 * 300.00418 * 10 9 7 33 33 H 1.08997 * 109.46936 * 60.00273 * 11 10 9 34 34 H 1.09001 * 109.47500 * 299.99901 * 11 10 9 35 35 H 1.08997 * 109.49355 * 63.21813 * 13 12 11 36 36 H 1.09004 * 109.48943 * 303.15264 * 13 12 11 37 37 H 1.09002 * 109.48707 * 181.63135 * 14 13 12 38 38 H 1.09002 * 109.48655 * 61.56567 * 14 13 12 39 39 H 1.08000 * 120.05984 * 359.97438 * 17 16 15 40 40 H 1.08003 * 120.85255 * 180.25990 * 18 17 16 41 41 H 1.08000 * 120.18131 * 359.95317 * 20 19 18 42 42 H 1.08000 * 119.57639 * 180.02562 * 21 20 19 43 43 H 1.07998 * 119.48514 * 179.97438 * 22 21 20 44 44 H 1.07996 * 120.11888 * 180.02562 * 23 22 21 45 45 H 1.08997 * 109.49355 * 60.64341 * 26 15 14 46 46 H 1.09003 * 109.49032 * 180.68883 * 26 15 14 47 47 H 1.09002 * 109.48908 * 56.84799 * 27 12 11 48 48 H 1.09002 * 109.49369 * 296.77670 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4347 -6.1037 0.0018 13 6 3.4986 -5.8865 0.9920 14 6 4.5129 -7.0295 0.9061 15 7 3.8281 -8.3076 1.1450 16 6 4.7293 -9.3616 1.1456 17 6 4.2588 -10.6647 1.3643 18 6 5.1317 -11.7104 1.3624 19 6 6.4988 -11.4394 1.1476 20 6 7.4522 -12.4692 1.1375 21 6 8.7642 -12.1704 0.9264 22 6 9.1729 -10.8548 0.7208 23 6 8.2745 -9.8321 0.7243 24 6 6.9119 -10.1013 0.9388 25 7 6.0077 -9.1150 0.9464 26 6 2.7642 -8.5248 0.1547 27 6 1.7499 -7.3818 0.2406 28 1 -0.4850 0.8400 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 2.8718 -3.6043 0.8906 32 1 2.8718 -3.6044 -0.8894 33 1 0.8532 -5.0451 -0.8886 34 1 0.8537 -5.0446 0.8914 35 1 3.0650 -5.8594 1.9917 36 1 3.9989 -4.9401 0.7866 37 1 5.2875 -6.8856 1.6594 38 1 4.9664 -7.0394 -0.0850 39 1 3.2060 -10.8390 1.5303 40 1 4.7860 -12.7207 1.5250 41 1 7.1472 -13.4930 1.2965 42 1 9.4969 -12.9638 0.9184 43 1 10.2190 -10.6428 0.5559 44 1 8.6076 -8.8176 0.5629 45 1 3.1978 -8.5519 -0.8449 46 1 2.2641 -9.4714 0.3599 47 1 0.9753 -7.5257 -0.5126 48 1 1.2964 -7.3718 1.2318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267349523.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:58 Heat of formation + Delta-G solvation = 68.825114 kcal Electronic energy + Delta-G solvation = -26370.112587 eV Core-core repulsion = 22810.700010 eV Total energy + Delta-G solvation = -3559.412577 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.29603 -39.54558 -37.52841 -35.48302 -33.81579 -33.44218 -31.57863 -31.15668 -30.18657 -29.84871 -27.48083 -25.38240 -24.69427 -23.17817 -23.14737 -22.29001 -22.05209 -20.24850 -19.50724 -18.40673 -17.58653 -17.43622 -16.30402 -15.64777 -15.26037 -15.12748 -15.03908 -14.66785 -14.60773 -14.52976 -14.31885 -14.26342 -14.04668 -13.50308 -13.36031 -13.25098 -12.37819 -12.30275 -11.99231 -11.89537 -11.78858 -11.60920 -11.40243 -11.27226 -11.21248 -10.88905 -10.81915 -10.80635 -10.49553 -10.34456 -9.79285 -9.67859 -9.58266 -9.32483 -9.03264 -8.70485 -8.32448 -8.15249 -8.06977 -5.97824 -3.99785 0.16036 0.58041 1.74594 2.59171 3.32010 3.33841 3.39861 3.43537 3.86495 4.08097 4.09062 4.34000 4.48583 4.51940 4.56413 4.66186 4.82232 4.86555 4.96036 5.00967 5.10966 5.15196 5.24810 5.38038 5.44799 5.47093 5.51042 5.57725 5.67689 5.71137 5.73382 5.77809 5.86693 5.89808 6.06134 6.07107 6.10212 6.15433 6.20295 6.29885 6.45527 6.58818 6.69256 6.76552 6.96308 7.08581 7.32735 7.36445 7.69719 7.78162 7.84429 8.02330 8.45522 9.07245 9.64090 11.13587 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.022927 B = 0.002056 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.972110 B =13616.947321 C =14692.228383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.112 4.112 11 C 0.057 3.943 12 N -0.542 5.542 13 C 0.047 3.953 14 C 0.072 3.928 15 N -0.479 5.479 16 C 0.349 3.651 17 C -0.177 4.177 18 C -0.042 4.042 19 C -0.130 4.130 20 C -0.087 4.087 21 C -0.133 4.133 22 C -0.096 4.096 23 C -0.102 4.102 24 C 0.159 3.841 25 N -0.518 5.518 26 C 0.065 3.935 27 C 0.055 3.945 28 H 0.260 0.740 29 H 0.016 0.984 30 H 0.014 0.986 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.030 0.970 35 H 0.040 0.960 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.127 0.873 44 H 0.134 0.866 45 H 0.056 0.944 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.638 -28.993 2.344 31.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.150 4.150 11 C -0.070 4.070 12 N -0.267 5.267 13 C -0.081 4.081 14 C -0.055 4.055 15 N -0.196 5.196 16 C 0.102 3.898 17 C -0.198 4.198 18 C -0.068 4.068 19 C -0.133 4.133 20 C -0.105 4.105 21 C -0.151 4.151 22 C -0.116 4.116 23 C -0.121 4.121 24 C 0.037 3.963 25 N -0.233 5.233 26 C -0.061 4.061 27 C -0.074 4.074 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.152 0.848 45 H 0.075 0.925 46 H 0.103 0.897 47 H 0.103 0.897 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 12.785 -27.973 2.190 30.834 hybrid contribution 0.008 0.135 0.395 0.418 sum 12.793 -27.838 2.586 30.746 Atomic orbital electron populations 1.69964 1.06043 1.26536 1.51017 1.25031 0.94860 0.99265 0.95410 0.86595 0.79842 0.83483 0.78091 1.20673 1.21278 1.19888 1.21243 0.93026 0.91038 1.50330 0.92699 1.19068 0.93999 0.91333 0.97146 1.21793 0.99380 0.93055 1.00789 1.22289 0.93925 0.90384 1.00377 1.62307 1.13233 1.02228 1.48891 1.22379 0.93103 0.98541 0.94063 1.22135 0.95647 0.85520 1.02212 1.59163 1.11387 1.02299 1.46749 1.20050 0.88913 0.90130 0.90671 1.21395 1.01619 0.91820 1.05005 1.21335 0.91638 0.99490 0.94297 1.18779 0.94519 0.94595 1.05409 1.20936 0.92870 0.98147 0.98595 1.20857 0.96102 0.96766 1.01365 1.20895 0.99825 0.92558 0.98330 1.20796 0.90492 1.00243 1.00612 1.18664 0.93482 0.87957 0.96216 1.68060 1.01619 1.35006 1.18651 1.22332 0.91521 0.99312 0.92909 1.22160 0.95370 0.89114 1.00758 0.93058 0.96559 0.96776 0.93120 0.92527 0.90950 0.95134 0.94142 0.88438 0.89408 0.92127 0.84285 0.84217 0.85535 0.85772 0.85459 0.84823 0.92541 0.89673 0.89696 0.93866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.33 4.42 -26.73 -0.12 -2.44 16 11 C 0.06 0.99 5.28 -3.82 -0.02 0.97 16 12 N -0.54 -8.17 4.86 -234.46 -1.14 -9.31 16 13 C 0.05 0.70 4.93 -3.77 -0.02 0.68 16 14 C 0.07 0.97 4.77 -3.76 -0.02 0.95 16 15 N -0.48 -5.93 4.72 -172.96 -0.82 -6.75 16 16 C 0.35 4.25 6.40 -155.49 -1.00 3.25 16 17 C -0.18 -1.68 9.11 -39.55 -0.36 -2.04 16 18 C -0.04 -0.35 9.88 -39.26 -0.39 -0.74 16 19 C -0.13 -1.29 5.74 -106.77 -0.61 -1.90 16 20 C -0.09 -0.66 9.77 -39.52 -0.39 -1.04 16 21 C -0.13 -0.93 9.96 -39.92 -0.40 -1.33 16 22 C -0.10 -0.75 9.94 -39.95 -0.40 -1.14 16 23 C -0.10 -1.03 9.98 -39.47 -0.39 -1.42 16 24 C 0.16 1.89 6.60 -84.86 -0.56 1.33 16 25 N -0.52 -6.87 8.61 -10.21 -0.09 -6.96 16 26 C 0.07 0.71 5.36 -3.77 -0.02 0.69 16 27 C 0.05 0.67 5.58 -3.76 -0.02 0.65 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 1.03 6.26 -51.92 -0.33 0.70 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.03 0.54 8.08 -51.93 -0.42 0.12 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.10 1.52 5.99 -51.93 -0.31 1.21 16 37 H 0.09 1.20 7.81 -51.93 -0.41 0.80 16 38 H 0.06 0.88 8.04 -51.93 -0.42 0.46 16 39 H 0.14 1.02 7.15 -52.49 -0.38 0.65 16 40 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 41 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 42 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 43 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.08 0.71 6.75 -51.93 -0.35 0.36 16 47 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 381.14 15.07 5.74 5.74 Total: -1.00 -32.38 381.14 -13.48 -45.87 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -7.64 Total: -2.31 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -5.26 Total: -16.74 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -1.31 Total: -49.45 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.38 -13.48 -45.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267349523.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.692 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds