Wall clock time and date at job start Tue Mar 31 2020 16:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35248 * 126.06713 * 2 1 4 4 C 1.40425 * 107.86026 * 180.02562 * 3 2 1 5 5 N 1.39991 * 125.97364 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99907 * 0.02562 * 5 4 3 7 7 H 1.08998 * 109.63827 * 318.61451 * 6 5 4 8 8 C 1.53076 * 109.63763 * 197.99186 * 6 5 4 9 9 C 1.51584 * 110.91734 * 325.91978 * 8 6 5 10 10 C 1.51593 * 114.41942 * 291.84093 * 9 8 6 11 11 C 1.53065 * 110.94183 * 68.16206 * 10 9 8 12 12 C 1.51460 * 108.45465 * 274.40680 * 11 10 9 13 13 C 1.38394 * 119.52654 * 250.65911 * 12 11 10 14 14 C 1.38292 * 119.61395 * 180.02562 * 13 12 11 15 15 C 1.38258 * 120.06101 * 359.97438 * 14 13 12 16 16 C 1.38295 * 120.05480 * 0.02562 * 15 14 13 17 17 C 1.37037 * 120.14691 * 70.68288 * 12 11 10 18 18 N 1.31220 * 108.04846 * 0.23793 * 4 3 2 19 19 N 1.34952 * 126.06820 * 180.02562 * 2 1 3 20 20 C 1.46500 * 125.97473 * 359.97254 * 19 2 1 21 21 C 1.50698 * 109.47278 * 90.00188 * 20 19 2 22 22 H 1.08003 * 119.99533 * 0.02562 * 21 20 19 23 23 C 1.37877 * 120.00577 * 179.97438 * 21 20 19 24 24 N 1.31514 * 119.99794 * 0.02562 * 23 21 20 25 25 Si 1.86792 * 120.00065 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47111 * 90.00404 * 25 23 21 27 27 H 1.48501 * 109.47110 * 209.99954 * 25 23 21 28 28 H 1.48496 * 109.47641 * 330.00338 * 25 23 21 29 29 H 1.08999 * 109.46938 * 89.97951 * 1 2 3 30 30 H 1.09006 * 109.47054 * 209.97427 * 1 2 3 31 31 H 1.09000 * 109.47301 * 329.97611 * 1 2 3 32 32 H 1.07998 * 126.06620 * 0.02562 * 3 2 1 33 33 H 0.97006 * 119.99663 * 179.97438 * 5 4 3 34 34 H 1.09007 * 109.18214 * 86.27183 * 8 6 5 35 35 H 1.08992 * 109.18701 * 205.52442 * 8 6 5 36 36 H 1.09004 * 108.47298 * 170.57817 * 9 8 6 37 37 H 1.08998 * 108.39300 * 53.04793 * 9 8 6 38 38 H 1.09002 * 109.18263 * 307.77980 * 10 9 8 39 39 H 1.09004 * 109.14033 * 188.50958 * 10 9 8 40 40 H 1.09002 * 109.63861 * 154.72064 * 11 10 9 41 41 H 1.08996 * 109.81867 * 34.19861 * 11 10 9 42 42 H 1.07993 * 120.19201 * 0.05832 * 13 12 11 43 43 H 1.08003 * 119.97118 * 179.97438 * 14 13 12 44 44 H 1.08003 * 119.97279 * 180.02562 * 15 14 13 45 45 H 1.07999 * 120.18875 * 180.02562 * 16 15 14 46 46 H 1.09001 * 109.47433 * 210.00696 * 20 19 2 47 47 H 1.09000 * 109.47201 * 330.00438 * 20 19 2 48 48 H 0.96994 * 119.99906 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6373 0.6545 -0.0006 5 7 4.7724 1.4738 -0.0013 6 6 4.6238 2.9312 -0.0009 7 1 3.8199 3.2177 -0.6789 8 6 5.9355 3.5821 -0.4471 9 6 7.1284 2.7762 0.0273 10 6 7.3351 2.7873 1.5290 11 6 6.2120 2.0296 2.2414 12 6 5.0558 2.9826 2.4624 13 6 4.7655 3.4172 3.7439 14 6 3.7099 4.2870 3.9478 15 6 2.9510 4.7185 2.8757 16 6 3.2460 4.2806 1.5975 17 6 4.3033 3.4098 1.3998 18 7 3.6336 -0.6577 -0.0061 19 7 2.3016 -1.0908 -0.0005 20 6 1.8499 -2.4845 -0.0005 21 6 1.6945 -2.9622 -1.4213 22 1 1.9110 -2.2945 -2.2422 23 6 1.2770 -4.2518 -1.6734 24 7 1.0139 -5.0650 -0.6739 25 14 1.0852 -4.8439 -3.4346 26 1 2.3663 -5.4321 -3.9014 27 1 0.0163 -5.8729 -3.4972 28 1 0.7204 -3.6977 -4.3054 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8903 0.5135 31 1 -0.3634 0.8898 0.5142 32 1 1.9720 2.1211 0.0004 33 1 5.6573 1.0764 -0.0013 34 1 5.9536 3.6419 -1.5354 35 1 5.9950 4.5885 -0.0328 36 1 8.0251 3.1739 -0.4481 37 1 6.9964 1.7436 -0.2960 38 1 7.3506 3.8188 1.8808 39 1 8.2896 2.3151 1.7619 40 1 6.5712 1.6604 3.2021 41 1 5.8837 1.1916 1.6266 42 1 5.3603 3.0796 4.5796 43 1 3.4780 4.6296 4.9455 44 1 2.1271 5.3981 3.0365 45 1 2.6549 4.6165 0.7584 46 1 2.5846 -3.1046 0.5130 47 1 0.8914 -2.5558 0.5136 48 1 0.7198 -5.9721 -0.8512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271052459.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:20 Heat of formation + Delta-G solvation = 104.574769 kcal Electronic energy + Delta-G solvation = -27907.258152 eV Core-core repulsion = 24349.395796 eV Total energy + Delta-G solvation = -3557.862356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 5.93 seconds Orbital eigenvalues (eV) -40.70775 -39.90396 -37.21490 -34.52559 -33.39545 -32.40642 -31.43577 -30.85520 -30.34597 -29.29603 -26.48221 -26.21604 -25.10873 -23.96648 -22.85929 -22.30491 -20.51969 -20.36895 -19.26103 -18.74411 -16.68907 -16.60410 -16.25403 -15.72721 -15.30482 -15.21474 -14.57961 -14.50901 -14.21509 -13.97978 -13.88194 -13.43128 -13.20738 -13.07080 -12.78358 -12.55225 -12.45280 -12.35945 -12.17572 -12.07790 -11.67948 -11.49962 -11.34822 -11.18632 -11.00513 -10.92476 -10.77538 -10.75283 -10.60502 -10.55110 -10.22616 -9.90834 -9.50024 -9.10051 -8.73642 -8.59077 -8.50513 -7.67285 -6.93808 -6.18843 -4.26876 1.42598 1.46453 2.96175 3.24290 3.28503 3.30488 3.36560 3.80284 3.86105 4.24867 4.38475 4.55871 4.70543 4.71819 4.90700 4.96134 5.02158 5.03245 5.13622 5.24959 5.27532 5.39728 5.48265 5.55248 5.63999 5.68499 5.77866 5.83236 5.84765 5.93216 5.95088 5.99026 6.10515 6.12714 6.14552 6.15865 6.33129 6.33849 6.41337 6.53540 6.54981 6.72672 6.84967 6.94350 7.07849 7.12041 7.26343 7.73039 7.79784 7.97342 8.19583 8.27729 8.79493 8.98896 9.39051 10.87319 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.017000 B = 0.003257 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.688649 B = 8595.521961 C = 9249.609995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.104 3.896 3 C -0.329 4.329 4 C 0.312 3.688 5 N -0.717 5.717 6 C 0.213 3.787 7 H 0.083 0.917 8 C -0.119 4.119 9 C -0.124 4.124 10 C -0.111 4.111 11 C -0.100 4.100 12 C -0.055 4.055 13 C -0.124 4.124 14 C -0.123 4.123 15 C -0.128 4.128 16 C -0.107 4.107 17 C -0.089 4.089 18 N -0.350 5.350 19 N -0.326 5.326 20 C 0.261 3.739 21 C -0.532 4.532 22 H 0.063 0.937 23 C 0.064 3.936 24 N -0.893 5.893 25 Si 0.905 3.095 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.272 1.272 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.126 0.874 33 H 0.400 0.600 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.097 0.903 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.120 0.880 46 H 0.049 0.951 47 H 0.050 0.950 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.285 20.416 5.768 22.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.029 4.029 3 C -0.362 4.362 4 C 0.057 3.943 5 N -0.365 5.365 6 C 0.106 3.894 7 H 0.101 0.899 8 C -0.157 4.157 9 C -0.162 4.162 10 C -0.148 4.148 11 C -0.137 4.137 12 C -0.055 4.055 13 C -0.142 4.142 14 C -0.141 4.141 15 C -0.147 4.147 16 C -0.126 4.126 17 C -0.091 4.091 18 N -0.181 5.181 19 N -0.106 5.106 20 C 0.143 3.857 21 C -0.570 4.570 22 H 0.081 0.919 23 C -0.139 4.139 24 N -0.531 5.531 25 Si 0.732 3.268 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.197 1.197 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.144 0.856 33 H 0.242 0.758 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.115 0.885 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.138 0.862 46 H 0.067 0.933 47 H 0.068 0.932 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.795 19.109 5.780 21.432 hybrid contribution -0.423 0.127 -0.762 0.881 sum 7.372 19.237 5.018 21.203 Atomic orbital electron populations 1.20328 0.88482 1.02596 1.02932 1.20820 0.94397 0.87495 1.00152 1.20402 0.90737 0.97966 1.27057 1.19073 0.87514 0.89567 0.98161 1.44009 1.04524 1.02316 1.85638 1.19698 0.97624 0.80176 0.91925 0.89934 1.21518 0.93338 0.99620 1.01191 1.21024 0.97979 1.00997 0.96164 1.21242 0.97969 1.00814 0.94785 1.21170 0.92951 0.98061 1.01566 1.19516 0.96496 0.96947 0.92561 1.21103 0.98200 0.98543 0.96343 1.21073 0.96059 0.98351 0.98629 1.21053 0.99878 1.00856 0.92871 1.21050 0.96756 0.97701 0.97057 1.20176 0.95496 0.97079 0.96319 1.77323 0.98918 1.08835 1.33046 1.48836 1.01378 1.07269 1.53086 1.19566 0.95694 0.71832 0.98624 1.21345 1.46299 0.97849 0.91549 0.91859 1.24927 0.94828 0.96136 0.97977 1.69923 1.45238 1.07029 1.30952 0.86377 0.77957 0.78532 0.83929 1.20397 1.20943 1.19719 0.90598 0.90991 0.91183 0.85568 0.75841 0.90912 0.90740 0.91784 0.91687 0.91974 0.91667 0.91673 0.88476 0.86508 0.86641 0.86509 0.86170 0.93288 0.93231 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.45 10.11 36.01 0.36 -1.09 16 2 C 0.10 2.18 6.92 -82.28 -0.57 1.61 16 3 C -0.33 -6.33 9.81 -39.82 -0.39 -6.72 16 4 C 0.31 6.19 8.06 -154.55 -1.25 4.94 16 5 N -0.72 -10.92 3.42 -54.30 -0.19 -11.11 16 6 C 0.21 2.59 2.52 -68.67 -0.17 2.42 16 7 H 0.08 1.02 7.28 -51.93 -0.38 0.64 16 8 C -0.12 -1.13 5.56 -27.41 -0.15 -1.28 16 9 C -0.12 -1.13 5.14 -28.16 -0.14 -1.28 16 10 C -0.11 -1.03 5.65 -27.41 -0.15 -1.18 16 11 C -0.10 -1.16 5.42 -27.48 -0.15 -1.31 16 12 C -0.05 -0.69 4.93 -104.63 -0.52 -1.20 16 13 C -0.12 -1.46 9.69 -39.50 -0.38 -1.84 16 14 C -0.12 -1.35 10.05 -39.55 -0.40 -1.75 16 15 C -0.13 -1.40 10.05 -39.55 -0.40 -1.80 16 16 C -0.11 -1.24 9.69 -39.50 -0.38 -1.62 16 17 C -0.09 -1.10 4.57 -104.63 -0.48 -1.58 16 18 N -0.35 -8.26 12.59 31.41 0.40 -7.87 16 19 N -0.33 -7.85 3.59 -58.33 -0.21 -8.06 16 20 C 0.26 6.87 5.99 -5.19 -0.03 6.84 16 21 C -0.53 -14.94 9.39 -34.44 -0.32 -15.26 16 22 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 23 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -25.54 13.29 55.43 0.74 -24.81 16 25 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.07 1.26 7.07 -51.93 -0.37 0.90 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.13 2.11 7.62 -52.49 -0.40 1.71 16 33 H 0.40 5.78 4.34 -40.82 -0.18 5.61 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.65 7.85 -51.93 -0.41 0.24 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.66 5.66 -51.93 -0.29 0.37 16 38 H 0.06 0.57 7.85 -51.93 -0.41 0.16 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.71 7.91 -51.93 -0.41 0.30 16 41 H 0.10 1.34 4.72 -51.93 -0.25 1.09 16 42 H 0.12 1.19 7.97 -52.49 -0.42 0.77 16 43 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 44 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 45 H 0.12 1.19 7.97 -52.49 -0.42 0.77 16 46 H 0.05 1.39 8.14 -51.93 -0.42 0.96 16 47 H 0.05 1.30 7.04 -51.93 -0.37 0.93 16 48 H 0.27 7.18 8.31 -40.82 -0.34 6.85 16 LS Contribution 377.11 15.07 5.68 5.68 Total: -1.00 -31.34 377.11 -11.44 -42.78 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -7.22 Total: 7.40 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -5.62 Total: -20.41 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.74 Total: -51.84 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.34 -11.44 -42.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271052459.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.352 kcal (2) G-P(sol) polarization free energy of solvation -31.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.93 seconds