Wall clock time and date at job start Tue Mar 31 2020 16:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35248 * 126.06713 * 2 1 4 4 C 1.40425 * 107.86026 * 180.02562 * 3 2 1 5 5 N 1.39991 * 125.97364 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99907 * 0.02562 * 5 4 3 7 7 H 1.08998 * 109.63827 * 318.61451 * 6 5 4 8 8 C 1.53076 * 109.63763 * 197.99186 * 6 5 4 9 9 C 1.51584 * 110.91734 * 325.91978 * 8 6 5 10 10 C 1.51593 * 114.41942 * 291.84093 * 9 8 6 11 11 C 1.53065 * 110.94183 * 68.16206 * 10 9 8 12 12 C 1.51460 * 108.45465 * 274.40680 * 11 10 9 13 13 C 1.38394 * 119.52654 * 250.65911 * 12 11 10 14 14 C 1.38292 * 119.61395 * 180.02562 * 13 12 11 15 15 C 1.38258 * 120.06101 * 359.97438 * 14 13 12 16 16 C 1.38295 * 120.05480 * 0.02562 * 15 14 13 17 17 C 1.37037 * 120.14691 * 70.68288 * 12 11 10 18 18 N 1.31220 * 108.04846 * 0.23793 * 4 3 2 19 19 N 1.34952 * 126.06820 * 180.02562 * 2 1 3 20 20 C 1.46500 * 125.97473 * 359.97254 * 19 2 1 21 21 C 1.50698 * 109.47278 * 90.00188 * 20 19 2 22 22 H 1.08003 * 119.99533 * 0.02562 * 21 20 19 23 23 C 1.37877 * 120.00577 * 179.97438 * 21 20 19 24 24 N 1.31514 * 119.99794 * 0.02562 * 23 21 20 25 25 Si 1.86792 * 120.00065 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47111 * 90.00404 * 25 23 21 27 27 H 1.48501 * 109.47110 * 209.99954 * 25 23 21 28 28 H 1.48496 * 109.47641 * 330.00338 * 25 23 21 29 29 H 1.08999 * 109.46938 * 89.97951 * 1 2 3 30 30 H 1.09006 * 109.47054 * 209.97427 * 1 2 3 31 31 H 1.09000 * 109.47301 * 329.97611 * 1 2 3 32 32 H 1.07998 * 126.06620 * 0.02562 * 3 2 1 33 33 H 0.97006 * 119.99663 * 179.97438 * 5 4 3 34 34 H 1.09007 * 109.18214 * 86.27183 * 8 6 5 35 35 H 1.08992 * 109.18701 * 205.52442 * 8 6 5 36 36 H 1.09004 * 108.47298 * 170.57817 * 9 8 6 37 37 H 1.08998 * 108.39300 * 53.04793 * 9 8 6 38 38 H 1.09002 * 109.18263 * 307.77980 * 10 9 8 39 39 H 1.09004 * 109.14033 * 188.50958 * 10 9 8 40 40 H 1.09002 * 109.63861 * 154.72064 * 11 10 9 41 41 H 1.08996 * 109.81867 * 34.19861 * 11 10 9 42 42 H 1.07993 * 120.19201 * 0.05832 * 13 12 11 43 43 H 1.08003 * 119.97118 * 179.97438 * 14 13 12 44 44 H 1.08003 * 119.97279 * 180.02562 * 15 14 13 45 45 H 1.07999 * 120.18875 * 180.02562 * 16 15 14 46 46 H 1.09001 * 109.47433 * 210.00696 * 20 19 2 47 47 H 1.09000 * 109.47201 * 330.00438 * 20 19 2 48 48 H 0.96994 * 119.99906 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6373 0.6545 -0.0006 5 7 4.7724 1.4738 -0.0013 6 6 4.6238 2.9312 -0.0009 7 1 3.8199 3.2177 -0.6789 8 6 5.9355 3.5821 -0.4471 9 6 7.1284 2.7762 0.0273 10 6 7.3351 2.7873 1.5290 11 6 6.2120 2.0296 2.2414 12 6 5.0558 2.9826 2.4624 13 6 4.7655 3.4172 3.7439 14 6 3.7099 4.2870 3.9478 15 6 2.9510 4.7185 2.8757 16 6 3.2460 4.2806 1.5975 17 6 4.3033 3.4098 1.3998 18 7 3.6336 -0.6577 -0.0061 19 7 2.3016 -1.0908 -0.0005 20 6 1.8499 -2.4845 -0.0005 21 6 1.6945 -2.9622 -1.4213 22 1 1.9110 -2.2945 -2.2422 23 6 1.2770 -4.2518 -1.6734 24 7 1.0139 -5.0650 -0.6739 25 14 1.0852 -4.8439 -3.4346 26 1 2.3663 -5.4321 -3.9014 27 1 0.0163 -5.8729 -3.4972 28 1 0.7204 -3.6977 -4.3054 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8903 0.5135 31 1 -0.3634 0.8898 0.5142 32 1 1.9720 2.1211 0.0004 33 1 5.6573 1.0764 -0.0013 34 1 5.9536 3.6419 -1.5354 35 1 5.9950 4.5885 -0.0328 36 1 8.0251 3.1739 -0.4481 37 1 6.9964 1.7436 -0.2960 38 1 7.3506 3.8188 1.8808 39 1 8.2896 2.3151 1.7619 40 1 6.5712 1.6604 3.2021 41 1 5.8837 1.1916 1.6266 42 1 5.3603 3.0796 4.5796 43 1 3.4780 4.6296 4.9455 44 1 2.1271 5.3981 3.0365 45 1 2.6549 4.6165 0.7584 46 1 2.5846 -3.1046 0.5130 47 1 0.8914 -2.5558 0.5136 48 1 0.7198 -5.9721 -0.8512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271052459.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:12 Heat of formation + Delta-G solvation = 90.062062 kcal Electronic energy + Delta-G solvation = -27907.887470 eV Core-core repulsion = 24349.395796 eV Total energy + Delta-G solvation = -3558.491674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 7.74 seconds Orbital eigenvalues (eV) -42.01178 -41.12192 -38.13126 -35.95191 -35.05888 -33.71988 -32.57885 -32.31008 -31.63046 -30.26241 -28.31369 -27.71131 -26.10894 -24.84520 -24.75137 -23.18613 -21.76358 -21.33789 -20.61617 -20.05009 -18.76658 -17.69674 -17.39097 -17.17050 -16.51269 -16.23806 -16.18684 -15.72518 -15.37978 -15.29502 -14.92022 -14.63345 -14.37696 -14.27016 -13.99731 -13.74297 -13.70538 -13.54209 -13.46307 -13.30840 -13.14450 -13.02258 -12.76253 -12.65437 -12.55311 -12.20726 -12.14706 -11.86143 -11.74380 -11.56055 -11.42866 -11.37594 -11.08356 -10.72833 -10.65377 -9.62119 -9.38734 -9.28940 -8.53719 -8.21658 -6.48668 0.54352 0.59381 1.30271 1.37553 1.39344 1.50129 1.79998 2.29820 2.34434 2.77222 2.97974 3.04721 3.73208 3.86596 3.91590 3.96328 4.05960 4.12705 4.23480 4.24373 4.31535 4.42431 4.43985 4.52875 4.59561 4.74305 4.74860 4.80326 4.85887 4.90376 4.93375 4.95174 5.00875 5.10470 5.11870 5.12561 5.17157 5.23759 5.29988 5.35593 5.37295 5.47772 5.55747 5.62453 5.70200 5.73232 5.85423 5.91231 6.22971 6.38835 6.47366 6.68997 6.84045 7.22522 7.41200 8.74997 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.017000 B = 0.003257 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.688649 B = 8595.521961 C = 9249.609995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.092 3.908 3 C -0.324 4.324 4 C 0.321 3.679 5 N -0.706 5.706 6 C 0.209 3.791 7 H 0.084 0.916 8 C -0.113 4.113 9 C -0.123 4.123 10 C -0.104 4.104 11 C -0.100 4.100 12 C -0.072 4.072 13 C -0.139 4.139 14 C -0.128 4.128 15 C -0.133 4.133 16 C -0.115 4.115 17 C -0.102 4.102 18 N -0.404 5.404 19 N -0.355 5.355 20 C 0.279 3.721 21 C -0.549 4.549 22 H 0.049 0.951 23 C 0.020 3.980 24 N -0.921 5.921 25 Si 0.972 3.028 26 H -0.276 1.276 27 H -0.270 1.270 28 H -0.268 1.268 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.107 0.893 32 H 0.156 0.844 33 H 0.402 0.598 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.051 0.949 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.126 0.874 43 H 0.136 0.864 44 H 0.140 0.860 45 H 0.137 0.863 46 H 0.014 0.986 47 H 0.045 0.955 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.065 22.818 5.069 24.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.039 4.039 3 C -0.356 4.356 4 C 0.064 3.936 5 N -0.353 5.353 6 C 0.103 3.897 7 H 0.102 0.898 8 C -0.150 4.150 9 C -0.161 4.161 10 C -0.141 4.141 11 C -0.137 4.137 12 C -0.072 4.072 13 C -0.157 4.157 14 C -0.146 4.146 15 C -0.151 4.151 16 C -0.134 4.134 17 C -0.104 4.104 18 N -0.236 5.236 19 N -0.136 5.136 20 C 0.160 3.840 21 C -0.587 4.587 22 H 0.067 0.933 23 C -0.181 4.181 24 N -0.559 5.559 25 Si 0.796 3.204 26 H -0.201 1.201 27 H -0.195 1.195 28 H -0.192 1.192 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.125 0.875 32 H 0.173 0.827 33 H 0.245 0.755 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.144 0.856 43 H 0.154 0.846 44 H 0.157 0.843 45 H 0.155 0.845 46 H 0.032 0.968 47 H 0.062 0.938 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.586 21.563 5.092 23.419 hybrid contribution -0.296 -0.492 -0.442 0.725 sum 7.289 21.071 4.650 22.776 Atomic orbital electron populations 1.20442 0.86054 1.03839 1.03650 1.21575 0.96161 0.86938 0.99210 1.20715 0.90148 0.98796 1.25953 1.19449 0.89279 0.88964 0.95881 1.44293 1.03386 1.03307 1.84361 1.19947 0.99342 0.78153 0.92263 0.89814 1.21510 0.91820 0.99859 1.01850 1.21029 0.98778 1.00211 0.96091 1.21196 0.97453 1.00767 0.94674 1.21135 0.93770 0.97447 1.01390 1.19702 0.96984 0.97429 0.93131 1.21337 0.98884 0.99027 0.96443 1.21393 0.95576 0.97819 0.99853 1.21378 1.00308 1.00862 0.92542 1.21319 0.96538 0.97483 0.98047 1.20227 0.96189 0.97889 0.96093 1.77226 0.99214 1.11066 1.36104 1.48565 1.02212 1.06915 1.55920 1.19046 0.94235 0.73288 0.97441 1.21460 1.47071 0.98315 0.91865 0.93317 1.25771 0.94034 0.95964 1.02294 1.70015 1.45382 1.07478 1.33063 0.85343 0.78200 0.78225 0.78636 1.20143 1.19465 1.19221 0.90014 0.92145 0.87478 0.82665 0.75548 0.89897 0.89414 0.89759 0.93097 0.91424 0.90606 0.91651 0.91012 0.85626 0.84638 0.84252 0.84543 0.96781 0.93766 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.72 10.11 71.24 0.72 -2.00 16 2 C 0.09 3.85 6.92 41.39 0.29 4.14 16 3 C -0.32 -12.18 9.81 22.11 0.22 -11.96 16 4 C 0.32 12.83 8.06 133.39 1.08 13.90 16 5 N -0.71 -21.34 3.42 -325.71 -1.12 -22.46 16 6 C 0.21 4.77 2.52 44.51 0.11 4.88 16 7 H 0.08 1.90 7.28 -2.39 -0.02 1.88 16 8 C -0.11 -1.89 5.56 30.16 0.17 -1.73 16 9 C -0.12 -2.05 5.14 29.67 0.15 -1.89 16 10 C -0.10 -1.79 5.65 30.15 0.17 -1.61 16 11 C -0.10 -2.30 5.42 30.11 0.16 -2.13 16 12 C -0.07 -1.74 4.93 -19.87 -0.10 -1.84 16 13 C -0.14 -3.11 9.69 22.32 0.22 -2.90 16 14 C -0.13 -2.56 10.05 22.29 0.22 -2.34 16 15 C -0.13 -2.56 10.05 22.29 0.22 -2.33 16 16 C -0.12 -2.39 9.69 22.32 0.22 -2.18 16 17 C -0.10 -2.38 4.57 -19.87 -0.09 -2.47 16 18 N -0.40 -19.82 12.59 -54.55 -0.69 -20.51 16 19 N -0.36 -17.79 3.59 -338.45 -1.22 -19.01 16 20 C 0.28 15.50 5.99 85.63 0.51 16.01 16 21 C -0.55 -31.83 9.39 25.60 0.24 -31.59 16 22 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 23 C 0.02 1.12 5.46 84.65 0.46 1.58 16 24 N -0.92 -53.61 13.29 21.45 0.28 -53.32 16 25 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 26 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 27 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 28 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 29 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.06 2.13 7.07 -2.38 -0.02 2.12 16 31 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.16 4.80 7.62 -2.91 -0.02 4.78 16 33 H 0.40 11.80 4.34 -92.70 -0.40 11.40 16 34 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.09 1.29 7.85 -2.39 -0.02 1.27 16 36 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.05 1.00 5.66 -2.39 -0.01 0.99 16 38 H 0.07 1.11 7.85 -2.39 -0.02 1.09 16 39 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.06 1.44 7.91 -2.39 -0.02 1.42 16 41 H 0.07 2.03 4.72 -2.39 -0.01 2.01 16 42 H 0.13 2.45 7.97 -2.91 -0.02 2.43 16 43 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 44 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 45 H 0.14 2.28 7.97 -2.91 -0.02 2.26 16 46 H 0.01 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.04 2.44 7.04 -2.39 -0.02 2.42 16 48 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -69.65 377.11 4.82 -64.82 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: 0.56 Total: 30.84 kcal Atomic # 6 Polarization: -31.43 SS G_CDS: 4.97 Total: -26.46 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -2.73 Total: -115.30 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -69.65 4.82 -64.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271052459.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.886 kcal (2) G-P(sol) polarization free energy of solvation -69.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.74 seconds