Wall clock time and date at job start Tue Mar 31 2020 16:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38668 * 120.78981 * 2 1 4 4 C 1.38186 * 119.16588 * 180.02562 * 3 2 1 5 5 N 1.31891 * 120.76203 * 0.02562 * 4 3 2 6 6 C 1.31852 * 121.72280 * 359.68557 * 5 4 3 7 7 C 1.38228 * 120.76714 * 0.57710 * 6 5 4 8 8 C 1.50700 * 120.41936 * 179.73638 * 7 6 5 9 9 C 1.52997 * 109.46877 * 264.72231 * 8 7 6 10 10 C 1.52996 * 109.47315 * 180.02562 * 9 8 7 11 11 N 1.46903 * 109.47600 * 179.31494 * 10 9 8 12 12 C 1.46899 * 110.99812 * 287.82129 * 11 10 9 13 13 C 1.50696 * 109.47083 * 298.75359 * 12 11 10 14 14 H 1.08002 * 119.99832 * 4.72477 * 13 12 11 15 15 C 1.37875 * 120.00020 * 184.72712 * 13 12 11 16 16 N 1.31519 * 119.99771 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00216 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46739 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47510 * 119.99530 * 17 15 13 20 20 H 1.48498 * 109.46745 * 239.99901 * 17 15 13 21 21 C 1.46898 * 111.00242 * 163.86136 * 11 10 9 22 22 C 1.50692 * 109.47348 * 190.00092 * 21 11 10 23 23 C 1.38231 * 119.61775 * 95.02556 * 22 21 11 24 24 C 1.38632 * 119.16214 * 179.75030 * 23 22 21 25 25 C 1.38671 * 118.41686 * 0.46900 * 24 23 22 26 26 C 1.38182 * 119.16764 * 359.50973 * 25 24 23 27 27 N 1.31854 * 119.62018 * 275.00685 * 22 21 11 28 28 H 1.08997 * 109.47088 * 269.97763 * 1 2 3 29 29 H 1.08997 * 109.47296 * 29.97888 * 1 2 3 30 30 H 1.09000 * 109.46954 * 149.97623 * 1 2 3 31 31 H 1.07997 * 120.42025 * 0.02562 * 3 2 1 32 32 H 1.08000 * 119.62115 * 179.97438 * 4 3 2 33 33 H 1.08003 * 119.61721 * 180.29186 * 6 5 4 34 34 H 1.09002 * 109.47127 * 144.72087 * 8 7 6 35 35 H 1.08995 * 109.47156 * 24.71712 * 8 7 6 36 36 H 1.08994 * 109.47439 * 59.99669 * 9 8 7 37 37 H 1.09011 * 109.47046 * 299.99897 * 9 8 7 38 38 H 1.09002 * 109.47197 * 59.31251 * 10 9 8 39 39 H 1.09003 * 109.47121 * 299.31658 * 10 9 8 40 40 H 1.08993 * 109.47086 * 58.75877 * 12 11 10 41 41 H 1.09000 * 109.46783 * 178.75209 * 12 11 10 42 42 H 0.96998 * 119.99924 * 180.02562 * 16 15 13 43 43 H 1.09000 * 109.46495 * 70.00136 * 21 11 10 44 44 H 1.09003 * 109.47420 * 310.00699 * 21 11 10 45 45 H 1.08005 * 120.41838 * 359.95411 * 23 22 21 46 46 H 1.07993 * 120.79077 * 180.23379 * 24 23 22 47 47 H 1.08003 * 120.41945 * 179.78109 * 25 24 23 48 48 H 1.08000 * 119.62207 * 180.24922 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1912 0.0000 4 6 3.5981 1.1521 -0.0005 5 7 4.2403 0.0001 -0.0016 6 6 3.5983 -1.1516 0.0041 7 6 2.2166 -1.1909 -0.0007 8 6 1.4908 -2.5116 -0.0002 9 6 1.1340 -2.8979 -1.4369 10 6 0.3966 -4.2385 -1.4365 11 7 0.0395 -4.6015 -2.8144 12 6 -1.0482 -3.7520 -3.3176 13 6 -2.2731 -3.9445 -2.4611 14 1 -2.2245 -4.5702 -1.5821 15 6 -3.4558 -3.3219 -2.7996 16 7 -3.5148 -2.5597 -3.8697 17 14 -4.9740 -3.5600 -1.7375 18 1 -4.6465 -4.4565 -0.5999 19 1 -5.4255 -2.2444 -1.2174 20 1 -6.0567 -4.1687 -2.5513 21 6 -0.3163 -6.0236 -2.9089 22 6 -0.4364 -6.4162 -4.3588 23 6 0.6465 -6.9820 -5.0053 24 6 0.5239 -7.3445 -6.3377 25 6 -0.6856 -7.1141 -6.9757 26 6 -1.7244 -6.5446 -6.2645 27 7 -1.5733 -6.2164 -4.9960 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6967 2.1377 0.0004 32 1 4.1583 2.0754 -0.0010 33 1 4.1585 -2.0750 0.0078 34 1 0.5785 -2.4247 0.5900 35 1 2.1324 -3.2786 0.4335 36 1 2.0462 -2.9848 -2.0271 37 1 0.4923 -2.1309 -1.8708 38 1 -0.5095 -4.1545 -0.8364 39 1 1.0423 -5.0082 -1.0137 40 1 -0.7398 -2.7073 -3.2811 41 1 -1.2777 -4.0273 -4.3469 42 1 -4.3467 -2.1213 -4.1076 43 1 -1.2684 -6.1939 -2.4062 44 1 0.4585 -6.6245 -2.4327 45 1 1.5753 -7.1428 -4.4780 46 1 1.3519 -7.7920 -6.8673 47 1 -0.8155 -7.3806 -8.0143 48 1 -2.6709 -6.3657 -6.7530 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289362653.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:51 Heat of formation + Delta-G solvation = 46.135671 kcal Electronic energy + Delta-G solvation = -27123.099851 eV Core-core repulsion = 23562.703386 eV Total energy + Delta-G solvation = -3560.396465 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.25546 -40.98930 -38.63982 -36.08063 -34.52852 -34.09052 -33.18687 -32.64440 -31.12732 -29.02016 -28.84184 -27.38699 -25.93334 -24.44491 -24.18991 -23.43622 -22.57273 -21.72505 -21.23828 -18.47484 -17.69437 -17.51549 -17.27589 -17.01281 -16.77363 -16.57121 -16.17072 -15.93167 -15.74759 -15.21351 -14.96438 -14.71291 -14.30973 -14.18569 -14.10208 -13.83069 -13.74476 -13.53148 -13.46716 -13.14071 -12.97331 -12.82198 -12.72121 -12.67640 -12.36941 -12.32113 -12.23646 -11.87898 -11.73675 -11.58629 -11.28886 -10.63424 -10.45189 -10.34507 -10.30166 -10.00473 -9.83134 -9.75702 -8.91802 -8.02863 -6.16025 0.23078 0.33554 0.35079 0.59110 1.34642 1.37623 1.46601 2.43222 2.85536 2.96433 3.25073 3.51063 3.61032 3.74353 3.84023 3.87032 3.98327 4.03386 4.06421 4.13532 4.32105 4.34568 4.41923 4.48155 4.50606 4.59404 4.65279 4.70894 4.72291 4.80790 4.85354 4.92157 4.92288 4.96642 5.03968 5.08282 5.14415 5.21297 5.36320 5.37812 5.40642 5.41880 5.49784 5.57238 5.57519 5.86452 5.89952 5.99516 6.17800 6.33597 6.62807 7.00915 7.07192 7.40250 7.51514 9.01097 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.010095 B = 0.003731 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2772.921347 B = 7503.575666 C = 9483.369067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.051 4.051 3 C -0.176 4.176 4 C 0.083 3.917 5 N -0.513 5.513 6 C 0.093 3.907 7 C -0.136 4.136 8 C -0.065 4.065 9 C -0.090 4.090 10 C 0.061 3.939 11 N -0.536 5.536 12 C 0.208 3.792 13 C -0.522 4.522 14 H 0.050 0.950 15 C 0.019 3.981 16 N -0.926 5.926 17 Si 0.941 3.059 18 H -0.268 1.268 19 H -0.279 1.279 20 H -0.288 1.288 21 C 0.108 3.892 22 C 0.121 3.879 23 C -0.162 4.162 24 C -0.080 4.080 25 C -0.175 4.175 26 C 0.069 3.931 27 N -0.499 5.499 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.154 0.846 32 H 0.179 0.821 33 H 0.171 0.829 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.062 0.938 37 H 0.034 0.966 38 H 0.027 0.973 39 H 0.085 0.915 40 H -0.008 1.008 41 H 0.016 0.984 42 H 0.257 0.743 43 H 0.029 0.971 44 H 0.103 0.897 45 H 0.155 0.845 46 H 0.170 0.830 47 H 0.162 0.838 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.563 -2.711 3.667 13.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.059 4.059 3 C -0.196 4.196 4 C -0.073 4.073 5 N -0.222 5.222 6 C -0.063 4.063 7 C -0.138 4.138 8 C -0.104 4.104 9 C -0.128 4.128 10 C -0.066 4.066 11 N -0.260 5.260 12 C 0.081 3.919 13 C -0.561 4.561 14 H 0.069 0.931 15 C -0.180 4.180 16 N -0.567 5.567 17 Si 0.768 3.232 18 H -0.192 1.192 19 H -0.205 1.205 20 H -0.214 1.214 21 C -0.020 4.020 22 C -0.016 4.016 23 C -0.182 4.182 24 C -0.105 4.105 25 C -0.195 4.195 26 C -0.088 4.088 27 N -0.209 5.209 28 H 0.106 0.894 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.171 0.829 32 H 0.196 0.804 33 H 0.188 0.812 34 H 0.089 0.911 35 H 0.115 0.885 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.045 0.955 39 H 0.103 0.897 40 H 0.010 0.990 41 H 0.034 0.966 42 H 0.066 0.934 43 H 0.047 0.953 44 H 0.121 0.879 45 H 0.173 0.827 46 H 0.187 0.813 47 H 0.180 0.820 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 13.079 -2.149 3.737 13.771 hybrid contribution -2.529 -0.111 0.155 2.536 sum 10.550 -2.260 3.892 11.469 Atomic orbital electron populations 1.20889 0.90196 1.03446 1.03273 1.20503 0.97101 0.93288 0.94997 1.22298 0.95794 0.99107 1.02380 1.23141 0.92104 0.96755 0.95319 1.67689 1.41895 0.99207 1.13419 1.22948 0.91137 0.96793 0.95411 1.20937 0.95326 0.96095 1.01410 1.20442 1.00131 0.93089 0.96704 1.21311 0.99387 0.96247 0.95839 1.22027 0.98286 0.97240 0.89089 1.62482 1.39799 1.02427 1.21258 1.19336 0.86686 0.90515 0.95326 1.21741 0.96555 1.27849 1.09967 0.93141 1.25558 1.01161 0.95241 0.95994 1.70083 1.27074 1.32823 1.26726 0.85773 0.80466 0.77797 0.79196 1.19212 1.20531 1.21410 1.20885 0.99980 0.90412 0.90769 1.21348 0.89350 0.94150 0.96788 1.22197 0.99524 1.00124 0.96379 1.21952 0.98149 0.96451 0.93993 1.22399 0.94062 1.00706 1.02331 1.23034 1.00121 0.95429 0.90246 1.67615 1.26965 1.15203 1.11105 0.89363 0.90713 0.92109 0.82859 0.80415 0.81162 0.91082 0.88485 0.91968 0.94692 0.95491 0.89659 0.99028 0.96611 0.93375 0.95267 0.87868 0.82692 0.81289 0.82029 0.83397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.26 9.31 71.24 0.66 -2.60 16 2 C -0.05 -1.35 5.92 -19.67 -0.12 -1.47 16 3 C -0.18 -4.03 9.82 22.36 0.22 -3.81 16 4 C 0.08 1.88 11.18 84.67 0.95 2.83 16 5 N -0.51 -13.59 10.36 -195.83 -2.03 -15.62 16 6 C 0.09 2.35 10.84 84.69 0.92 3.27 16 7 C -0.14 -3.58 5.15 -19.77 -0.10 -3.68 16 8 C -0.07 -1.68 4.68 29.85 0.14 -1.54 16 9 C -0.09 -2.93 5.10 30.59 0.16 -2.78 16 10 C 0.06 2.16 4.81 86.30 0.41 2.58 16 11 N -0.54 -22.35 4.66 -905.40 -4.22 -26.56 16 12 C 0.21 10.97 4.71 85.56 0.40 11.38 16 13 C -0.52 -28.87 7.33 25.60 0.19 -28.68 16 14 H 0.05 2.76 5.95 -2.91 -0.02 2.75 16 15 C 0.02 1.08 5.46 84.65 0.46 1.54 16 16 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16 17 Si 0.94 45.16 29.54 68.60 2.03 47.19 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 21 C 0.11 4.13 5.09 85.55 0.44 4.57 16 22 C 0.12 4.64 5.70 42.55 0.24 4.88 16 23 C -0.16 -4.69 9.72 22.36 0.22 -4.47 16 24 C -0.08 -1.92 10.18 22.47 0.23 -1.69 16 25 C -0.18 -4.62 10.11 22.36 0.23 -4.39 16 26 C 0.07 2.45 11.18 84.67 0.95 3.40 16 27 N -0.50 -21.77 8.78 -183.89 -1.61 -23.38 16 28 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.07 1.88 8.10 -2.39 -0.02 1.86 16 30 H 0.06 1.98 5.64 -2.39 -0.01 1.96 16 31 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 32 H 0.18 2.85 8.06 -2.91 -0.02 2.83 16 33 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 34 H 0.07 1.89 7.10 -2.39 -0.02 1.88 16 35 H 0.10 1.98 8.06 -2.39 -0.02 1.96 16 36 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.03 1.39 5.55 -2.38 -0.01 1.38 16 38 H 0.03 1.08 6.17 -2.39 -0.01 1.06 16 39 H 0.09 2.40 7.81 -2.39 -0.02 2.38 16 40 H -0.01 -0.48 6.65 -2.39 -0.02 -0.50 16 41 H 0.02 0.94 6.19 -2.39 -0.01 0.92 16 42 H 0.26 14.93 8.31 -92.71 -0.77 14.15 16 43 H 0.03 1.30 6.57 -2.39 -0.02 1.28 16 44 H 0.10 3.07 7.76 -2.39 -0.02 3.05 16 45 H 0.16 3.51 8.06 -2.91 -0.02 3.48 16 46 H 0.17 2.59 8.06 -2.91 -0.02 2.56 16 47 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 48 H 0.15 4.90 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -73.35 386.77 1.99 -71.36 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.95 Total: 23.81 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: 6.59 Total: -20.66 kcal Atomic # 7 Polarization: -114.12 SS G_CDS: -7.57 Total: -121.70 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -73.35 1.99 -71.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289362653.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.494 kcal (2) G-P(sol) polarization free energy of solvation -73.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds