Wall clock time and date at job start Tue Mar 31 2020 17:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30832 * 125.90184 * 2 1 4 4 N 1.40082 * 108.20975 * 179.97438 * 3 2 1 5 5 H 0.96998 * 126.04473 * 179.97438 * 4 3 2 6 6 C 1.34955 * 107.92366 * 0.02562 * 4 3 2 7 7 C 1.50695 * 126.12820 * 180.02562 * 6 4 3 8 8 C 1.35316 * 107.74421 * 359.97438 * 6 4 3 9 9 C 1.50701 * 126.03836 * 180.26597 * 8 6 4 10 10 H 1.09000 * 109.91013 * 345.41248 * 9 8 6 11 11 C 1.53991 * 109.91592 * 106.52087 * 9 8 6 12 12 C 1.54593 * 105.14198 * 120.58040 * 11 9 8 13 13 C 1.54940 * 102.92323 * 21.95402 * 12 11 9 14 14 N 1.47906 * 109.91762 * 224.31318 * 9 8 6 15 15 C 1.46895 * 111.00037 * 94.79960 * 14 9 8 16 16 C 1.50702 * 109.47131 * 170.00212 * 15 14 9 17 17 C 1.38645 * 119.74616 * 269.73251 * 16 15 14 18 18 C 1.37622 * 120.24099 * 179.72329 * 17 16 15 19 19 C 1.40711 * 119.75033 * 0.52415 * 18 17 16 20 20 C 1.41392 * 120.24711 * 179.73190 * 19 18 17 21 21 H 1.07998 * 120.00382 * 155.30927 * 20 19 18 22 22 C 1.39951 * 119.99732 * 335.30449 * 20 19 18 23 23 N 1.30819 * 119.99850 * 342.23680 * 22 20 19 24 24 Si 1.86796 * 119.99946 * 162.23554 * 22 20 19 25 25 H 1.48501 * 109.47145 * 94.66226 * 24 22 20 26 26 H 1.48501 * 109.46937 * 214.66645 * 24 22 20 27 27 H 1.48502 * 109.47255 * 334.66524 * 24 22 20 28 28 C 1.40724 * 119.50916 * 359.74383 * 19 18 17 29 29 C 1.37614 * 119.74229 * 0.02562 * 28 19 18 30 30 H 1.09002 * 109.47004 * 270.01726 * 1 2 3 31 31 H 1.09003 * 109.47034 * 30.01343 * 1 2 3 32 32 H 1.09001 * 109.47426 * 150.02071 * 1 2 3 33 33 H 1.09004 * 109.46999 * 269.97251 * 7 6 4 34 34 H 1.09001 * 109.46969 * 29.96852 * 7 6 4 35 35 H 1.08997 * 109.47439 * 149.97475 * 7 6 4 36 36 H 1.09005 * 110.30504 * 239.49314 * 11 9 8 37 37 H 1.08999 * 110.30888 * 1.65887 * 11 9 8 38 38 H 1.08995 * 110.72850 * 140.31369 * 12 11 9 39 39 H 1.09005 * 110.72440 * 263.41860 * 12 11 9 40 40 H 1.08997 * 110.66613 * 81.02097 * 13 12 11 41 41 H 1.08998 * 110.66565 * 203.99078 * 13 12 11 42 42 H 1.08996 * 109.47623 * 289.99889 * 15 14 9 43 43 H 1.09001 * 109.47294 * 50.00308 * 15 14 9 44 44 H 1.07993 * 119.87705 * 359.97223 * 17 16 15 45 45 H 1.08003 * 120.12332 * 180.27721 * 18 17 16 46 46 H 0.97001 * 120.00090 * 180.02562 * 23 22 20 47 47 H 1.08002 * 120.12336 * 179.97438 * 28 19 18 48 48 H 1.08008 * 119.87225 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 0.0006 5 1 4.3909 1.2078 0.0004 6 6 3.6142 -0.7155 0.0004 7 6 4.8350 -1.5990 0.0014 8 6 2.3271 -1.1331 0.0002 9 6 1.8599 -2.5658 0.0056 10 1 2.6881 -3.2273 -0.2484 11 6 1.3037 -2.9310 1.3944 12 6 -0.1636 -3.3488 1.1448 13 6 -0.1632 -3.7357 -0.3556 14 7 0.7591 -2.7405 -0.9667 15 6 1.2695 -3.2139 -2.2602 16 6 0.1134 -3.6132 -3.1407 17 6 -0.3532 -4.9185 -3.1135 18 6 -1.4119 -5.2928 -3.9090 19 6 -2.0140 -4.3479 -4.7603 20 6 -3.0987 -4.7225 -5.5863 21 1 -3.8036 -3.9768 -5.9232 22 6 -3.2588 -6.0595 -5.9675 23 7 -2.2551 -6.8927 -5.8678 24 14 -4.9055 -6.6544 -6.6184 25 1 -4.9023 -6.5941 -8.1021 26 1 -5.1342 -8.0548 -6.1803 27 1 -5.9891 -5.7872 -6.0901 28 6 -1.5283 -3.0273 -4.7837 29 6 -0.4715 -2.6742 -3.9760 30 1 -0.3633 0.0003 1.0277 31 1 -0.3633 0.8899 -0.5141 32 1 -0.3634 -0.8902 -0.5135 33 1 5.1300 -1.8123 -1.0261 34 1 5.6508 -1.0909 0.5156 35 1 4.6072 -2.5329 0.5152 36 1 1.8663 -3.7616 1.8207 37 1 1.3434 -2.0665 2.0571 38 1 -0.4315 -4.2050 1.7637 39 1 -0.8393 -2.5139 1.3305 40 1 0.2208 -4.7466 -0.4921 41 1 -1.1647 -3.6457 -0.7763 42 1 1.8344 -2.4160 -2.7421 43 1 1.9194 -4.0745 -2.1015 44 1 0.1133 -5.6431 -2.4626 45 1 -1.7768 -6.3090 -3.8830 46 1 -2.3660 -7.8194 -6.1323 47 1 -1.9827 -2.2941 -5.4336 48 1 -0.0968 -1.6613 -3.9926 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331838346.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:29 Heat of formation + Delta-G solvation = 86.422838 kcal Electronic energy + Delta-G solvation = -27725.352010 eV Core-core repulsion = 24166.702527 eV Total energy + Delta-G solvation = -3558.649482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.33972 -38.81043 -37.21400 -33.96786 -33.24604 -32.23111 -31.83879 -29.57331 -29.16818 -28.85640 -27.32160 -26.42138 -26.09321 -23.50074 -21.33890 -21.20457 -20.51146 -20.04271 -19.55822 -18.94664 -17.25980 -17.08752 -15.77984 -15.29636 -15.10884 -15.01189 -14.32432 -14.11175 -13.87006 -13.68892 -13.43431 -13.26383 -12.87769 -12.81229 -12.60427 -12.40049 -12.19709 -12.15013 -11.99741 -11.88355 -11.75902 -11.52356 -11.23669 -11.18252 -10.95755 -10.84651 -10.69756 -10.56804 -10.46487 -10.33337 -10.20545 -9.51646 -9.33847 -9.09187 -9.08160 -8.24495 -7.92801 -7.39621 -7.23947 -6.74145 -4.31772 1.91936 2.75422 2.87771 2.92544 3.07810 3.11405 3.13233 3.21251 3.94725 4.35527 4.63849 4.70495 4.85802 4.93958 4.96570 5.08042 5.17181 5.29290 5.45340 5.55871 5.64326 5.69117 5.73821 5.76592 5.85120 5.92468 5.97743 5.99667 6.05101 6.14173 6.16380 6.30785 6.36950 6.39798 6.43468 6.46882 6.50432 6.57411 6.92396 6.98250 7.10429 7.27767 7.35361 7.40744 7.41925 7.54939 7.65972 7.86454 7.93578 8.09125 8.18478 8.34436 8.67447 8.93102 9.01541 10.20377 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.021735 B = 0.002860 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.927356 B = 9786.973648 C = 9956.213836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.115 3.885 3 N -0.310 5.310 4 N -0.484 5.484 5 H 0.433 0.567 6 C 0.078 3.922 7 C -0.092 4.092 8 C -0.207 4.207 9 C 0.141 3.859 10 H 0.051 0.949 11 C -0.120 4.120 12 C -0.126 4.126 13 C 0.045 3.955 14 N -0.499 5.499 15 C 0.117 3.883 16 C -0.210 4.210 17 C -0.092 4.092 18 C -0.166 4.166 19 C 0.113 3.887 20 C -0.464 4.464 21 H 0.076 0.924 22 C 0.077 3.923 23 N -0.794 5.794 24 Si 0.905 3.095 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.260 1.260 28 C -0.228 4.228 29 C -0.068 4.068 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.042 0.958 41 H 0.087 0.913 42 H 0.062 0.938 43 H 0.023 0.977 44 H 0.081 0.919 45 H 0.115 0.885 46 H 0.279 0.721 47 H 0.089 0.911 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.116 5.805 13.264 17.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.051 4.051 3 N -0.133 5.133 4 N -0.192 5.192 5 H 0.276 0.724 6 C -0.051 4.051 7 C -0.150 4.150 8 C -0.218 4.218 9 C 0.031 3.969 10 H 0.069 0.931 11 C -0.158 4.158 12 C -0.164 4.164 13 C -0.082 4.082 14 N -0.223 5.223 15 C -0.010 4.010 16 C -0.211 4.211 17 C -0.111 4.111 18 C -0.185 4.185 19 C 0.111 3.889 20 C -0.493 4.493 21 H 0.094 0.906 22 C -0.141 4.141 23 N -0.420 5.420 24 Si 0.729 3.271 25 H -0.196 1.196 26 H -0.201 1.201 27 H -0.184 1.184 28 C -0.248 4.248 29 C -0.087 4.087 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.132 0.868 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.041 0.959 44 H 0.100 0.900 45 H 0.133 0.867 46 H 0.090 0.910 47 H 0.108 0.892 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.952 7.304 13.093 17.995 hybrid contribution 0.355 -1.618 -0.377 1.699 sum 10.307 5.686 12.715 17.328 Atomic orbital electron populations 1.20450 0.86476 1.05060 1.02214 1.22172 0.97114 0.89412 0.96441 1.77284 0.86310 1.22684 1.27022 1.46063 1.07341 1.04554 1.61245 0.72417 1.20796 0.96808 0.85074 1.02382 1.20434 0.92895 0.98342 1.03335 1.19555 0.90528 0.95957 1.15800 1.20532 0.93453 0.90640 0.92275 0.93107 1.22423 0.96409 1.00660 0.96317 1.22542 0.96203 1.01005 0.96660 1.23172 0.98730 0.93835 0.92483 1.64764 1.13054 1.42619 1.01869 1.20834 0.94775 0.96792 0.88613 1.18847 1.02966 0.94382 1.04949 1.20509 0.97525 0.94189 0.98907 1.21253 0.98817 1.00329 0.98112 1.17604 0.90834 0.90812 0.89675 1.19594 1.09532 0.93265 1.26931 0.90559 1.25892 0.97523 0.96700 0.93953 1.69831 1.30523 1.05609 1.36013 0.86359 0.82722 0.78584 0.79412 1.19645 1.20091 1.18422 1.20967 1.01200 0.97508 1.05095 1.20324 0.96059 0.96454 0.95896 0.91721 0.92017 0.86848 0.90264 0.91377 0.89784 0.92011 0.91378 0.91624 0.90923 0.93958 0.89414 0.91934 0.95893 0.90039 0.86704 0.90997 0.89241 0.89568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 10.23 36.01 0.37 -0.76 16 2 C 0.12 1.69 7.16 -82.41 -0.59 1.10 16 3 N -0.31 -4.60 12.70 33.67 0.43 -4.17 16 4 N -0.48 -5.66 7.36 33.48 0.25 -5.41 16 5 H 0.43 3.58 8.96 -182.61 -1.64 1.95 16 6 C 0.08 0.90 7.21 -82.26 -0.59 0.30 16 7 C -0.09 -0.72 10.00 36.00 0.36 -0.36 16 8 C -0.21 -2.78 4.84 -105.05 -0.51 -3.29 16 9 C 0.14 1.83 2.59 -67.79 -0.18 1.65 16 10 H 0.05 0.65 6.58 -51.93 -0.34 0.31 16 11 C -0.12 -1.35 6.56 -25.38 -0.17 -1.52 16 12 C -0.13 -1.49 7.06 -24.87 -0.18 -1.66 16 13 C 0.05 0.67 4.99 -1.74 -0.01 0.66 16 14 N -0.50 -7.61 2.80 -225.14 -0.63 -8.24 16 15 C 0.12 2.03 5.18 -4.98 -0.03 2.01 16 16 C -0.21 -4.40 4.63 -104.33 -0.48 -4.88 16 17 C -0.09 -2.06 8.33 -39.66 -0.33 -2.39 16 18 C -0.17 -4.20 8.70 -38.87 -0.34 -4.54 16 19 C 0.11 2.99 5.57 -106.82 -0.60 2.39 16 20 C -0.46 -12.28 9.05 -37.74 -0.34 -12.62 16 21 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 22 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 23 N -0.79 -20.44 10.97 55.55 0.61 -19.83 16 24 Si 0.90 18.61 29.59 -169.99 -5.03 13.58 16 25 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 26 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 27 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 28 C -0.23 -5.60 9.80 -38.87 -0.38 -5.98 16 29 C -0.07 -1.53 9.67 -39.67 -0.38 -1.91 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.11 1.69 5.98 -51.93 -0.31 1.38 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.62 7.42 -51.93 -0.39 0.23 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.77 7.68 -51.93 -0.40 0.38 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.04 0.65 7.09 -51.93 -0.37 0.28 16 41 H 0.09 1.49 7.77 -51.93 -0.40 1.09 16 42 H 0.06 1.11 8.08 -51.93 -0.42 0.70 16 43 H 0.02 0.39 7.75 -51.93 -0.40 -0.01 16 44 H 0.08 1.67 7.40 -52.49 -0.39 1.28 16 45 H 0.12 3.03 6.18 -52.48 -0.32 2.71 16 46 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 47 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 48 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 LS Contribution 381.64 15.07 5.75 5.75 Total: -1.00 -28.79 381.64 -11.82 -40.60 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -8.73 Total: 7.67 kcal Atomic # 6 Polarization: -25.51 SS G_CDS: -4.46 Total: -29.96 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.65 Total: -37.64 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.79 -11.82 -40.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331838346.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.027 kcal (2) G-P(sol) polarization free energy of solvation -28.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds