Wall clock time and date at job start Tue Mar 31 2020 17:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30832 * 125.90184 * 2 1 4 4 N 1.40082 * 108.20975 * 179.97438 * 3 2 1 5 5 H 0.96998 * 126.04473 * 179.97438 * 4 3 2 6 6 C 1.34955 * 107.92366 * 0.02562 * 4 3 2 7 7 C 1.50695 * 126.12820 * 180.02562 * 6 4 3 8 8 C 1.35316 * 107.74421 * 359.97438 * 6 4 3 9 9 C 1.50701 * 126.03836 * 180.26597 * 8 6 4 10 10 H 1.09000 * 109.91013 * 345.41248 * 9 8 6 11 11 C 1.53991 * 109.91592 * 106.52087 * 9 8 6 12 12 C 1.54593 * 105.14198 * 120.58040 * 11 9 8 13 13 C 1.54940 * 102.92323 * 21.95402 * 12 11 9 14 14 N 1.47906 * 109.91762 * 224.31318 * 9 8 6 15 15 C 1.46895 * 111.00037 * 94.79960 * 14 9 8 16 16 C 1.50702 * 109.47131 * 170.00212 * 15 14 9 17 17 C 1.38645 * 119.74616 * 269.73251 * 16 15 14 18 18 C 1.37622 * 120.24099 * 179.72329 * 17 16 15 19 19 C 1.40711 * 119.75033 * 0.52415 * 18 17 16 20 20 C 1.41392 * 120.24711 * 179.73190 * 19 18 17 21 21 H 1.07998 * 120.00382 * 155.30927 * 20 19 18 22 22 C 1.39951 * 119.99732 * 335.30449 * 20 19 18 23 23 N 1.30819 * 119.99850 * 342.23680 * 22 20 19 24 24 Si 1.86796 * 119.99946 * 162.23554 * 22 20 19 25 25 H 1.48501 * 109.47145 * 94.66226 * 24 22 20 26 26 H 1.48501 * 109.46937 * 214.66645 * 24 22 20 27 27 H 1.48502 * 109.47255 * 334.66524 * 24 22 20 28 28 C 1.40724 * 119.50916 * 359.74383 * 19 18 17 29 29 C 1.37614 * 119.74229 * 0.02562 * 28 19 18 30 30 H 1.09002 * 109.47004 * 270.01726 * 1 2 3 31 31 H 1.09003 * 109.47034 * 30.01343 * 1 2 3 32 32 H 1.09001 * 109.47426 * 150.02071 * 1 2 3 33 33 H 1.09004 * 109.46999 * 269.97251 * 7 6 4 34 34 H 1.09001 * 109.46969 * 29.96852 * 7 6 4 35 35 H 1.08997 * 109.47439 * 149.97475 * 7 6 4 36 36 H 1.09005 * 110.30504 * 239.49314 * 11 9 8 37 37 H 1.08999 * 110.30888 * 1.65887 * 11 9 8 38 38 H 1.08995 * 110.72850 * 140.31369 * 12 11 9 39 39 H 1.09005 * 110.72440 * 263.41860 * 12 11 9 40 40 H 1.08997 * 110.66613 * 81.02097 * 13 12 11 41 41 H 1.08998 * 110.66565 * 203.99078 * 13 12 11 42 42 H 1.08996 * 109.47623 * 289.99889 * 15 14 9 43 43 H 1.09001 * 109.47294 * 50.00308 * 15 14 9 44 44 H 1.07993 * 119.87705 * 359.97223 * 17 16 15 45 45 H 1.08003 * 120.12332 * 180.27721 * 18 17 16 46 46 H 0.97001 * 120.00090 * 180.02562 * 23 22 20 47 47 H 1.08002 * 120.12336 * 179.97438 * 28 19 18 48 48 H 1.08008 * 119.87225 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 0.0006 5 1 4.3909 1.2078 0.0004 6 6 3.6142 -0.7155 0.0004 7 6 4.8350 -1.5990 0.0014 8 6 2.3271 -1.1331 0.0002 9 6 1.8599 -2.5658 0.0056 10 1 2.6881 -3.2273 -0.2484 11 6 1.3037 -2.9310 1.3944 12 6 -0.1636 -3.3488 1.1448 13 6 -0.1632 -3.7357 -0.3556 14 7 0.7591 -2.7405 -0.9667 15 6 1.2695 -3.2139 -2.2602 16 6 0.1134 -3.6132 -3.1407 17 6 -0.3532 -4.9185 -3.1135 18 6 -1.4119 -5.2928 -3.9090 19 6 -2.0140 -4.3479 -4.7603 20 6 -3.0987 -4.7225 -5.5863 21 1 -3.8036 -3.9768 -5.9232 22 6 -3.2588 -6.0595 -5.9675 23 7 -2.2551 -6.8927 -5.8678 24 14 -4.9055 -6.6544 -6.6184 25 1 -4.9023 -6.5941 -8.1021 26 1 -5.1342 -8.0548 -6.1803 27 1 -5.9891 -5.7872 -6.0901 28 6 -1.5283 -3.0273 -4.7837 29 6 -0.4715 -2.6742 -3.9760 30 1 -0.3633 0.0003 1.0277 31 1 -0.3633 0.8899 -0.5141 32 1 -0.3634 -0.8902 -0.5135 33 1 5.1300 -1.8123 -1.0261 34 1 5.6508 -1.0909 0.5156 35 1 4.6072 -2.5329 0.5152 36 1 1.8663 -3.7616 1.8207 37 1 1.3434 -2.0665 2.0571 38 1 -0.4315 -4.2050 1.7637 39 1 -0.8393 -2.5139 1.3305 40 1 0.2208 -4.7466 -0.4921 41 1 -1.1647 -3.6457 -0.7763 42 1 1.8344 -2.4160 -2.7421 43 1 1.9194 -4.0745 -2.1015 44 1 0.1133 -5.6431 -2.4626 45 1 -1.7768 -6.3090 -3.8830 46 1 -2.3660 -7.8194 -6.1323 47 1 -1.9827 -2.2941 -5.4336 48 1 -0.0968 -1.6613 -3.9926 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331838346.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:27 Heat of formation + Delta-G solvation = 72.440578 kcal Electronic energy + Delta-G solvation = -27725.958326 eV Core-core repulsion = 24166.702527 eV Total energy + Delta-G solvation = -3559.255799 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.30635 -40.14371 -38.84760 -35.74733 -34.17423 -33.64650 -32.84982 -31.25767 -30.94913 -29.83350 -28.32988 -27.87775 -27.20417 -25.08446 -23.00782 -22.33249 -21.95835 -21.26028 -20.89301 -19.94608 -19.18009 -18.03364 -17.15229 -16.88118 -16.22122 -16.01707 -15.84661 -15.62482 -15.44928 -14.97190 -14.45412 -14.32062 -14.21218 -13.93718 -13.74559 -13.70596 -13.62415 -13.40407 -13.26171 -13.08869 -12.99999 -12.83282 -12.72059 -12.63032 -12.26734 -12.19863 -12.14497 -12.01347 -11.78817 -11.55994 -11.32216 -11.19852 -11.18442 -10.95354 -10.06708 -9.33590 -9.25728 -9.14425 -9.00324 -8.60766 -6.29125 0.97157 1.00807 1.21052 1.38834 1.49360 1.55081 1.84863 2.08428 2.22567 2.72425 3.28976 3.79636 3.85868 3.89346 3.94413 4.02363 4.23309 4.31907 4.37052 4.39438 4.46585 4.59256 4.64283 4.66681 4.70960 4.74920 4.81482 4.90220 4.92797 4.99754 5.08609 5.09218 5.11113 5.13872 5.16837 5.19967 5.31823 5.36965 5.41836 5.45185 5.49760 5.52880 5.75894 5.88042 6.00929 6.14195 6.18089 6.33126 6.37002 6.45057 6.56002 6.75056 6.88372 6.98933 7.08968 8.36099 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.021735 B = 0.002860 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.927356 B = 9786.973648 C = 9956.213836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.099 3.901 3 N -0.343 5.343 4 N -0.476 5.476 5 H 0.446 0.554 6 C 0.091 3.909 7 C -0.091 4.091 8 C -0.232 4.232 9 C 0.145 3.855 10 H 0.061 0.939 11 C -0.111 4.111 12 C -0.118 4.118 13 C 0.045 3.955 14 N -0.505 5.505 15 C 0.125 3.875 16 C -0.191 4.191 17 C -0.089 4.089 18 C -0.186 4.186 19 C 0.082 3.918 20 C -0.504 4.504 21 H 0.070 0.930 22 C 0.037 3.963 23 N -0.826 5.826 24 Si 0.978 3.022 25 H -0.264 1.264 26 H -0.264 1.264 27 H -0.261 1.261 28 C -0.245 4.245 29 C -0.073 4.073 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.039 0.961 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.034 0.966 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.287 0.713 47 H 0.089 0.911 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.878 5.525 14.892 19.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.067 4.067 3 N -0.168 5.168 4 N -0.185 5.185 5 H 0.292 0.708 6 C -0.039 4.039 7 C -0.149 4.149 8 C -0.243 4.243 9 C 0.035 3.965 10 H 0.079 0.921 11 C -0.150 4.150 12 C -0.156 4.156 13 C -0.083 4.083 14 N -0.229 5.229 15 C -0.002 4.002 16 C -0.193 4.193 17 C -0.107 4.107 18 C -0.206 4.206 19 C 0.080 3.920 20 C -0.534 4.534 21 H 0.088 0.912 22 C -0.177 4.177 23 N -0.452 5.452 24 Si 0.799 3.201 25 H -0.189 1.189 26 H -0.189 1.189 27 H -0.184 1.184 28 C -0.264 4.264 29 C -0.092 4.092 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.053 0.947 44 H 0.120 0.880 45 H 0.116 0.884 46 H 0.098 0.902 47 H 0.107 0.893 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.734 7.049 14.732 20.110 hybrid contribution -0.021 -1.418 -0.799 1.628 sum 11.713 5.631 13.934 19.054 Atomic orbital electron populations 1.20365 0.86576 1.03975 1.02772 1.22339 0.97431 0.90074 0.96885 1.77210 0.87731 1.23413 1.28396 1.46106 1.06965 1.05125 1.60332 0.70769 1.21334 0.97550 0.85142 0.99893 1.20582 0.91918 0.98163 1.04228 1.19677 0.91245 0.95772 1.17625 1.20553 0.92814 0.90751 0.92346 0.92139 1.22388 0.95811 1.01409 0.95358 1.22493 0.96932 1.01674 0.94488 1.23098 0.97052 0.93592 0.94527 1.64673 1.14190 1.42413 1.01610 1.20699 0.93093 0.97190 0.89216 1.19219 1.02776 0.93394 1.03870 1.20697 0.96540 0.95251 0.98246 1.21214 1.00358 0.99587 0.99409 1.17912 0.91727 0.91831 0.90553 1.19811 1.10425 0.94463 1.28712 0.91158 1.26693 1.01042 0.96200 0.93796 1.69875 1.32342 1.06176 1.36813 0.85257 0.77700 0.78241 0.78891 1.18862 1.18882 1.18435 1.21124 1.02191 0.97139 1.05980 1.20553 0.95438 0.97596 0.95582 0.90399 0.92572 0.88297 0.89620 0.88880 0.88870 0.90016 0.91219 0.89900 0.90987 0.94306 0.92345 0.92002 0.94750 0.87967 0.88388 0.90238 0.89292 0.87893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.10 10.23 71.24 0.73 -1.37 16 2 C 0.10 2.78 7.16 43.10 0.31 3.09 16 3 N -0.34 -9.81 12.70 -47.38 -0.60 -10.41 16 4 N -0.48 -10.07 7.36 -48.00 -0.35 -10.43 16 5 H 0.45 6.34 8.96 -213.33 -1.91 4.43 16 6 C 0.09 1.83 7.21 41.40 0.30 2.12 16 7 C -0.09 -1.06 10.00 71.23 0.71 -0.35 16 8 C -0.23 -5.72 4.84 -20.14 -0.10 -5.81 16 9 C 0.14 3.38 2.59 44.31 0.11 3.49 16 10 H 0.06 1.32 6.58 -2.39 -0.02 1.30 16 11 C -0.11 -2.18 6.56 31.47 0.21 -1.97 16 12 C -0.12 -2.54 7.06 31.80 0.22 -2.31 16 13 C 0.04 1.28 4.99 86.60 0.43 1.71 16 14 N -0.50 -14.62 2.80 -866.19 -2.42 -17.04 16 15 C 0.13 4.15 5.18 85.56 0.44 4.59 16 16 C -0.19 -7.93 4.63 -19.67 -0.09 -8.02 16 17 C -0.09 -3.97 8.33 22.22 0.19 -3.78 16 18 C -0.19 -9.77 8.70 22.73 0.20 -9.57 16 19 C 0.08 4.51 5.57 -21.29 -0.12 4.39 16 20 C -0.50 -27.93 9.05 23.46 0.21 -27.72 16 21 H 0.07 3.80 7.91 -2.91 -0.02 3.78 16 22 C 0.04 1.91 5.14 85.26 0.44 2.35 16 23 N -0.83 -43.65 10.97 21.83 0.24 -43.41 16 24 Si 0.98 38.86 29.59 68.60 2.03 40.89 16 25 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 26 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 27 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 28 C -0.24 -12.43 9.80 22.73 0.22 -12.21 16 29 C -0.07 -3.28 9.67 22.22 0.21 -3.07 16 30 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.10 2.93 5.98 -2.39 -0.01 2.92 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.09 0.97 7.42 -2.39 -0.02 0.95 16 36 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.07 1.38 7.68 -2.39 -0.02 1.36 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.04 1.13 7.09 -2.39 -0.02 1.11 16 41 H 0.06 2.00 7.77 -2.39 -0.02 1.99 16 42 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16 43 H 0.03 1.07 7.75 -2.39 -0.02 1.05 16 44 H 0.10 4.10 7.40 -2.91 -0.02 4.07 16 45 H 0.10 5.41 6.18 -2.91 -0.02 5.39 16 46 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 47 H 0.09 4.38 8.06 -2.91 -0.02 4.35 16 48 H 0.10 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -64.46 381.64 2.58 -61.88 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: -0.95 Total: 32.93 kcal Atomic # 6 Polarization: -59.06 SS G_CDS: 4.63 Total: -54.43 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -3.14 Total: -81.28 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal Total: -64.46 2.58 -61.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331838346.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.322 kcal (2) G-P(sol) polarization free energy of solvation -64.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds