Wall clock time and date at job start Tue Mar 31 2020 14:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46902 * 111.00028 * 2 1 4 4 C 1.50694 * 109.47387 * 72.04835 * 3 2 1 5 5 C 1.38633 * 119.74948 * 89.99652 * 4 3 2 6 6 C 1.37620 * 120.25008 * 180.27896 * 5 4 3 7 7 C 1.40719 * 119.74295 * 359.51987 * 6 5 4 8 8 C 1.41391 * 120.24172 * 180.23251 * 7 6 5 9 9 H 1.07998 * 119.99963 * 208.90737 * 8 7 6 10 10 C 1.39941 * 120.00295 * 28.91082 * 8 7 6 11 11 N 1.30825 * 119.99948 * 10.18350 * 10 8 7 12 12 Si 1.86803 * 120.00178 * 190.17834 * 10 8 7 13 13 H 1.48496 * 109.47074 * 89.99903 * 12 10 8 14 14 H 1.48500 * 109.47099 * 210.00000 * 12 10 8 15 15 H 1.48504 * 109.46880 * 329.99926 * 12 10 8 16 16 C 1.40712 * 119.51161 * 0.47840 * 7 6 5 17 17 C 1.37623 * 119.74680 * 359.75459 * 16 7 6 18 18 C 1.46900 * 111.00080 * 236.04339 * 2 1 3 19 19 H 1.08996 * 109.47230 * 152.67404 * 18 2 1 20 20 C 1.53005 * 109.46905 * 32.67018 * 18 2 1 21 21 C 1.53004 * 109.46803 * 68.76122 * 20 18 2 22 22 O 1.42901 * 109.47031 * 174.13304 * 21 20 18 23 23 C 1.50704 * 109.47308 * 272.67566 * 18 2 1 24 24 C 1.38237 * 119.99588 * 24.77147 * 23 18 2 25 25 C 1.38236 * 119.99349 * 179.79330 * 24 23 18 26 26 C 1.38227 * 120.00356 * 0.43918 * 25 24 23 27 27 C 1.38240 * 119.99861 * 359.81337 * 26 25 24 28 28 C 1.38226 * 119.99908 * 205.04869 * 23 18 2 29 29 H 1.09004 * 109.46689 * 50.99118 * 1 2 3 30 30 H 1.08998 * 109.47020 * 170.99054 * 1 2 3 31 31 H 1.08998 * 109.47113 * 290.99331 * 1 2 3 32 32 H 1.09006 * 109.46587 * 312.04758 * 3 2 1 33 33 H 1.08996 * 109.47152 * 192.05048 * 3 2 1 34 34 H 1.08000 * 119.87577 * 0.02562 * 5 4 3 35 35 H 1.07994 * 120.12677 * 179.72946 * 6 5 4 36 36 H 0.97001 * 120.00000 * 180.02562 * 11 10 8 37 37 H 1.07995 * 120.12702 * 179.72850 * 16 7 6 38 38 H 1.07996 * 119.87641 * 179.97438 * 17 16 7 39 39 H 1.09004 * 109.47001 * 188.75804 * 20 18 2 40 40 H 1.08993 * 109.47481 * 308.76471 * 20 18 2 41 41 H 1.08992 * 109.47148 * 294.13544 * 21 20 18 42 42 H 1.09001 * 109.47003 * 54.13668 * 21 20 18 43 43 H 0.96699 * 113.99906 * 179.97438 * 22 21 20 44 44 H 1.07998 * 120.00464 * 359.97438 * 24 23 18 45 45 H 1.08006 * 119.99935 * 180.27010 * 25 24 23 46 46 H 1.08004 * 120.00710 * 179.83789 * 26 25 24 47 47 H 1.08007 * 120.00162 * 180.02562 * 27 26 25 48 48 H 1.08005 * 120.00230 * 359.97438 * 28 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7667 1.9974 1.3516 5 6 2.7312 1.8727 2.3395 6 6 2.5305 2.4353 3.5793 7 6 1.3452 3.1479 3.8390 8 6 1.1302 3.7344 5.1074 9 1 0.1247 3.8595 5.4811 10 6 2.2203 4.1529 5.8787 11 7 3.4181 4.1879 5.3536 12 14 1.9653 4.6616 7.6580 13 1 2.1155 3.4752 8.5384 14 1 2.9750 5.6850 8.0298 15 1 0.6025 5.2290 7.8200 16 6 0.3732 3.2680 2.8287 17 6 0.5930 2.6930 1.5978 18 6 1.9955 -0.7660 -1.1375 19 1 2.9780 -0.3815 -1.4110 20 6 1.0446 -0.6291 -2.3284 21 6 1.0918 0.8062 -2.8563 22 8 0.3106 0.9009 -4.0491 23 6 2.1136 -2.2185 -0.7535 24 6 1.3169 -2.7347 0.2513 25 6 1.4223 -4.0681 0.6006 26 6 2.3306 -4.8830 -0.0486 27 6 3.1310 -4.3655 -1.0499 28 6 3.0226 -3.0332 -1.4022 29 1 -0.3633 0.6469 -0.7986 30 1 -0.3633 -1.0150 -0.1609 31 1 -0.3633 0.3682 0.9594 32 1 1.4831 1.9573 -0.7632 33 1 3.0639 1.3505 -0.2145 34 1 3.6418 1.3285 2.1368 35 1 3.2813 2.3333 4.3489 36 1 4.1737 4.4776 5.8884 37 1 -0.5421 3.8089 3.0186 38 1 -0.1517 2.7835 0.8210 39 1 1.3492 -1.3167 -3.1175 40 1 0.0291 -0.8664 -2.0116 41 1 0.6891 1.4836 -2.1034 42 1 2.1241 1.0789 -3.0755 43 1 0.2949 1.7853 -4.4397 44 1 0.6101 -2.0971 0.7615 45 1 0.7968 -4.4725 1.3827 46 1 2.4148 -5.9241 0.2260 47 1 3.8405 -5.0023 -1.5575 48 1 3.6480 -2.6288 -2.1845 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343556965.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:02 Heat of formation + Delta-G solvation = 5.286806 kcal Electronic energy + Delta-G solvation = -27222.119043 eV Core-core repulsion = 23627.658487 eV Total energy + Delta-G solvation = -3594.460556 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.04957 -38.25824 -37.34884 -36.29509 -33.84275 -32.24639 -30.89724 -30.36418 -29.83948 -29.20189 -27.43548 -26.49154 -24.58642 -22.59745 -22.16937 -21.97482 -20.93224 -19.92450 -19.72409 -17.63941 -17.26433 -16.67613 -16.42788 -15.45420 -15.38596 -15.08701 -14.57967 -14.36862 -14.18333 -13.98289 -13.79431 -13.41979 -13.32568 -13.19890 -12.68498 -12.57124 -12.52259 -12.02685 -11.86550 -11.66500 -11.58397 -11.43915 -11.33068 -11.27507 -11.06089 -10.95526 -10.78515 -10.66738 -10.37644 -10.27477 -10.05127 -9.58373 -9.32445 -9.19190 -8.82739 -8.61157 -7.96868 -7.42315 -7.22656 -6.68046 -4.35141 1.41850 1.50577 2.74988 3.07679 3.09216 3.11822 3.17613 3.77991 3.95825 4.08311 4.22926 4.72320 4.80408 4.85135 4.98426 5.05319 5.10301 5.13138 5.23659 5.32541 5.41762 5.50668 5.59354 5.62448 5.69339 5.74108 5.82182 5.91383 5.99781 6.02189 6.05325 6.15802 6.20640 6.32151 6.35086 6.44506 6.52337 6.61733 6.72552 6.96817 7.08664 7.10426 7.27857 7.31973 7.40635 7.42498 7.44937 7.64426 7.87774 8.08772 8.15143 8.33101 8.67918 8.92923 8.99809 10.25771 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.013694 B = 0.003020 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.257266 B = 9269.356343 C =10593.745282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.523 5.523 3 C 0.114 3.886 4 C -0.199 4.199 5 C -0.082 4.082 6 C -0.159 4.159 7 C 0.112 3.888 8 C -0.465 4.465 9 H 0.075 0.925 10 C 0.073 3.927 11 N -0.803 5.803 12 Si 0.910 3.090 13 H -0.269 1.269 14 H -0.278 1.278 15 H -0.263 1.263 16 C -0.223 4.223 17 C -0.087 4.087 18 C 0.121 3.879 19 H 0.085 0.915 20 C -0.144 4.144 21 C 0.067 3.933 22 O -0.576 6.576 23 C -0.063 4.063 24 C -0.096 4.096 25 C -0.124 4.124 26 C -0.128 4.128 27 C -0.125 4.125 28 C -0.119 4.119 29 H 0.028 0.972 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.031 0.969 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.278 0.722 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.058 0.942 42 H 0.044 0.956 43 H 0.378 0.622 44 H 0.136 0.864 45 H 0.118 0.882 46 H 0.116 0.884 47 H 0.117 0.883 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.231 -10.748 -12.971 16.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.246 5.246 3 C -0.012 4.012 4 C -0.201 4.201 5 C -0.101 4.101 6 C -0.178 4.178 7 C 0.109 3.891 8 C -0.495 4.495 9 H 0.093 0.907 10 C -0.143 4.143 11 N -0.429 5.429 12 Si 0.735 3.265 13 H -0.194 1.194 14 H -0.204 1.204 15 H -0.188 1.188 16 C -0.242 4.242 17 C -0.106 4.106 18 C 0.012 3.988 19 H 0.103 0.897 20 C -0.183 4.183 21 C -0.011 4.011 22 O -0.382 6.382 23 C -0.064 4.064 24 C -0.114 4.114 25 C -0.142 4.142 26 C -0.146 4.146 27 C -0.143 4.143 28 C -0.138 4.138 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.136 0.864 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.225 0.775 44 H 0.153 0.847 45 H 0.136 0.864 46 H 0.134 0.866 47 H 0.135 0.865 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.916 -11.526 -12.350 16.918 hybrid contribution -0.082 1.283 0.047 1.286 sum -0.998 -10.243 -12.303 16.040 Atomic orbital electron populations 1.22651 0.87905 1.00622 1.01945 1.62239 1.07726 1.14778 1.39841 1.21020 0.98341 0.86265 0.95554 1.18828 0.97520 1.08415 0.95324 1.20506 0.96917 0.98829 0.93861 1.21370 1.00008 1.00176 0.96256 1.17628 0.91004 0.88420 0.92032 1.19581 0.93777 1.35335 1.00794 0.90687 1.25873 0.94651 0.93749 1.00017 1.69793 1.00197 1.35935 1.37006 0.86287 0.79156 0.78890 0.82186 1.19385 1.20364 1.18751 1.20981 1.01423 1.07902 0.93939 1.20325 0.95515 0.98668 0.96046 1.20612 0.98215 0.91270 0.88685 0.89660 1.22247 1.01977 0.95976 0.98128 1.22590 0.94246 0.97703 0.86521 1.86445 1.73527 1.35883 1.42334 1.19733 0.96039 0.94420 0.96219 1.21318 0.99128 0.94719 0.96191 1.21201 0.98942 0.94211 0.99884 1.21098 0.96850 0.99584 0.97058 1.21018 0.99759 0.95338 0.98207 1.20934 0.98767 0.93913 1.00169 0.95388 0.91766 0.90396 0.95117 0.91780 0.89597 0.86357 0.91061 0.89236 0.90043 0.90927 0.90073 0.92442 0.93742 0.77489 0.84663 0.86350 0.86619 0.86514 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 6.65 60.07 0.40 0.63 16 2 N -0.52 -7.73 3.94 -237.72 -0.94 -8.67 16 3 C 0.11 1.86 4.52 -4.98 -0.02 1.84 16 4 C -0.20 -4.11 5.08 -104.33 -0.53 -4.64 16 5 C -0.08 -1.89 9.67 -39.66 -0.38 -2.27 16 6 C -0.16 -4.09 8.66 -38.87 -0.34 -4.43 16 7 C 0.11 2.95 5.55 -106.83 -0.59 2.35 16 8 C -0.46 -12.34 9.06 -37.75 -0.34 -12.68 16 9 H 0.07 1.92 7.87 -52.49 -0.41 1.51 16 10 C 0.07 1.85 5.26 -17.34 -0.09 1.76 16 11 N -0.80 -20.87 10.82 55.55 0.60 -20.27 16 12 Si 0.91 18.86 29.57 -169.99 -5.03 13.83 16 13 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 14 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 15 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 16 C -0.22 -5.36 9.80 -38.87 -0.38 -5.74 16 17 C -0.09 -1.85 8.31 -39.66 -0.33 -2.18 16 18 C 0.12 1.53 2.15 -68.86 -0.15 1.38 16 19 H 0.09 1.05 7.38 -51.93 -0.38 0.67 16 20 C -0.14 -1.69 4.52 -26.73 -0.12 -1.81 16 21 C 0.07 0.75 5.92 37.16 0.22 0.97 16 22 O -0.58 -6.45 13.66 -35.23 -0.48 -6.93 16 23 C -0.06 -0.82 5.04 -104.62 -0.53 -1.34 16 24 C -0.10 -1.27 8.70 -39.58 -0.34 -1.62 16 25 C -0.12 -1.49 10.05 -39.59 -0.40 -1.89 16 26 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 27 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 28 C -0.12 -1.38 9.72 -39.59 -0.38 -1.77 16 29 H 0.03 0.37 5.47 -51.93 -0.28 0.09 16 30 H 0.06 0.81 5.20 -51.93 -0.27 0.54 16 31 H 0.08 1.25 6.90 -51.93 -0.36 0.89 16 32 H 0.03 0.47 5.16 -51.93 -0.27 0.20 16 33 H 0.06 1.02 7.55 -51.93 -0.39 0.62 16 34 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.12 3.20 6.21 -52.49 -0.33 2.87 16 36 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 37 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 38 H 0.08 1.54 8.06 -52.49 -0.42 1.11 16 39 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 40 H 0.08 1.00 5.73 -51.93 -0.30 0.71 16 41 H 0.06 0.69 4.13 -51.93 -0.21 0.48 16 42 H 0.04 0.46 8.11 -51.93 -0.42 0.04 16 43 H 0.38 2.58 9.12 45.56 0.42 3.00 16 44 H 0.14 1.87 5.11 -52.49 -0.27 1.60 16 45 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 46 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 47 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 48 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 374.82 15.07 5.65 5.65 Total: -1.00 -28.68 374.82 -11.30 -39.98 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -6.00 Total: 11.40 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: -5.11 Total: -34.98 kcal Atomic # 7 Polarization: -28.61 SS G_CDS: -0.33 Total: -28.94 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.48 Total: -6.93 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.68 -11.30 -39.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343556965.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.271 kcal (2) G-P(sol) polarization free energy of solvation -28.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds