Wall clock time and date at job start Tue Mar 31 2020 14:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46902 * 111.00028 * 2 1 4 4 C 1.50694 * 109.47387 * 72.04835 * 3 2 1 5 5 C 1.38633 * 119.74948 * 89.99652 * 4 3 2 6 6 C 1.37620 * 120.25008 * 180.27896 * 5 4 3 7 7 C 1.40719 * 119.74295 * 359.51987 * 6 5 4 8 8 C 1.41391 * 120.24172 * 180.23251 * 7 6 5 9 9 H 1.07998 * 119.99963 * 208.90737 * 8 7 6 10 10 C 1.39941 * 120.00295 * 28.91082 * 8 7 6 11 11 N 1.30825 * 119.99948 * 10.18350 * 10 8 7 12 12 Si 1.86803 * 120.00178 * 190.17834 * 10 8 7 13 13 H 1.48496 * 109.47074 * 89.99903 * 12 10 8 14 14 H 1.48500 * 109.47099 * 210.00000 * 12 10 8 15 15 H 1.48504 * 109.46880 * 329.99926 * 12 10 8 16 16 C 1.40712 * 119.51161 * 0.47840 * 7 6 5 17 17 C 1.37623 * 119.74680 * 359.75459 * 16 7 6 18 18 C 1.46900 * 111.00080 * 236.04339 * 2 1 3 19 19 H 1.08996 * 109.47230 * 152.67404 * 18 2 1 20 20 C 1.53005 * 109.46905 * 32.67018 * 18 2 1 21 21 C 1.53004 * 109.46803 * 68.76122 * 20 18 2 22 22 O 1.42901 * 109.47031 * 174.13304 * 21 20 18 23 23 C 1.50704 * 109.47308 * 272.67566 * 18 2 1 24 24 C 1.38237 * 119.99588 * 24.77147 * 23 18 2 25 25 C 1.38236 * 119.99349 * 179.79330 * 24 23 18 26 26 C 1.38227 * 120.00356 * 0.43918 * 25 24 23 27 27 C 1.38240 * 119.99861 * 359.81337 * 26 25 24 28 28 C 1.38226 * 119.99908 * 205.04869 * 23 18 2 29 29 H 1.09004 * 109.46689 * 50.99118 * 1 2 3 30 30 H 1.08998 * 109.47020 * 170.99054 * 1 2 3 31 31 H 1.08998 * 109.47113 * 290.99331 * 1 2 3 32 32 H 1.09006 * 109.46587 * 312.04758 * 3 2 1 33 33 H 1.08996 * 109.47152 * 192.05048 * 3 2 1 34 34 H 1.08000 * 119.87577 * 0.02562 * 5 4 3 35 35 H 1.07994 * 120.12677 * 179.72946 * 6 5 4 36 36 H 0.97001 * 120.00000 * 180.02562 * 11 10 8 37 37 H 1.07995 * 120.12702 * 179.72850 * 16 7 6 38 38 H 1.07996 * 119.87641 * 179.97438 * 17 16 7 39 39 H 1.09004 * 109.47001 * 188.75804 * 20 18 2 40 40 H 1.08993 * 109.47481 * 308.76471 * 20 18 2 41 41 H 1.08992 * 109.47148 * 294.13544 * 21 20 18 42 42 H 1.09001 * 109.47003 * 54.13668 * 21 20 18 43 43 H 0.96699 * 113.99906 * 179.97438 * 22 21 20 44 44 H 1.07998 * 120.00464 * 359.97438 * 24 23 18 45 45 H 1.08006 * 119.99935 * 180.27010 * 25 24 23 46 46 H 1.08004 * 120.00710 * 179.83789 * 26 25 24 47 47 H 1.08007 * 120.00162 * 180.02562 * 27 26 25 48 48 H 1.08005 * 120.00230 * 359.97438 * 28 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7667 1.9974 1.3516 5 6 2.7312 1.8727 2.3395 6 6 2.5305 2.4353 3.5793 7 6 1.3452 3.1479 3.8390 8 6 1.1302 3.7344 5.1074 9 1 0.1247 3.8595 5.4811 10 6 2.2203 4.1529 5.8787 11 7 3.4181 4.1879 5.3536 12 14 1.9653 4.6616 7.6580 13 1 2.1155 3.4752 8.5384 14 1 2.9750 5.6850 8.0298 15 1 0.6025 5.2290 7.8200 16 6 0.3732 3.2680 2.8287 17 6 0.5930 2.6930 1.5978 18 6 1.9955 -0.7660 -1.1375 19 1 2.9780 -0.3815 -1.4110 20 6 1.0446 -0.6291 -2.3284 21 6 1.0918 0.8062 -2.8563 22 8 0.3106 0.9009 -4.0491 23 6 2.1136 -2.2185 -0.7535 24 6 1.3169 -2.7347 0.2513 25 6 1.4223 -4.0681 0.6006 26 6 2.3306 -4.8830 -0.0486 27 6 3.1310 -4.3655 -1.0499 28 6 3.0226 -3.0332 -1.4022 29 1 -0.3633 0.6469 -0.7986 30 1 -0.3633 -1.0150 -0.1609 31 1 -0.3633 0.3682 0.9594 32 1 1.4831 1.9573 -0.7632 33 1 3.0639 1.3505 -0.2145 34 1 3.6418 1.3285 2.1368 35 1 3.2813 2.3333 4.3489 36 1 4.1737 4.4776 5.8884 37 1 -0.5421 3.8089 3.0186 38 1 -0.1517 2.7835 0.8210 39 1 1.3492 -1.3167 -3.1175 40 1 0.0291 -0.8664 -2.0116 41 1 0.6891 1.4836 -2.1034 42 1 2.1241 1.0789 -3.0755 43 1 0.2949 1.7853 -4.4397 44 1 0.6101 -2.0971 0.7615 45 1 0.7968 -4.4725 1.3827 46 1 2.4148 -5.9241 0.2260 47 1 3.8405 -5.0023 -1.5575 48 1 3.6480 -2.6288 -2.1845 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343556965.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:01 Heat of formation + Delta-G solvation = -10.511432 kcal Electronic energy + Delta-G solvation = -27222.804106 eV Core-core repulsion = 23627.658487 eV Total energy + Delta-G solvation = -3595.145619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.07304 -39.57073 -38.68484 -37.29474 -35.60248 -33.52359 -31.95468 -31.50820 -31.13270 -30.93171 -28.86326 -27.68910 -26.05804 -23.76216 -23.25285 -22.93041 -22.73507 -21.43333 -20.87352 -19.17622 -18.52615 -17.58406 -17.42575 -17.15340 -16.49523 -16.22287 -15.80554 -15.68978 -15.49130 -15.21705 -14.98212 -14.83010 -14.53812 -14.20920 -14.10961 -13.78519 -13.67192 -13.54798 -13.35237 -13.10465 -12.83163 -12.74763 -12.65149 -12.57203 -12.32791 -12.23936 -12.08621 -12.05663 -11.68145 -11.59710 -11.25957 -11.16232 -11.04838 -10.89249 -9.71422 -9.51892 -9.29469 -9.21225 -8.99789 -8.55191 -6.32548 0.53250 0.61526 0.98397 1.19309 1.37805 1.49748 1.51981 2.22447 2.71556 2.90643 3.16659 3.28981 3.81856 3.88331 3.90627 4.13324 4.18296 4.20466 4.25407 4.26800 4.33003 4.39292 4.46599 4.52911 4.58087 4.61705 4.65334 4.70818 4.80367 4.85596 4.88120 5.00565 5.04833 5.10204 5.18024 5.19778 5.21360 5.29425 5.42884 5.50818 5.65732 5.72659 5.75884 5.77840 5.98218 6.13369 6.16060 6.21264 6.32776 6.34415 6.44415 6.76310 6.82584 6.99125 7.08469 8.40665 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.013694 B = 0.003020 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.257266 B = 9269.356343 C =10593.745282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.534 5.534 3 C 0.119 3.881 4 C -0.181 4.181 5 C -0.090 4.090 6 C -0.182 4.182 7 C 0.077 3.923 8 C -0.504 4.504 9 H 0.071 0.929 10 C 0.031 3.969 11 N -0.836 5.836 12 Si 0.982 3.018 13 H -0.264 1.264 14 H -0.268 1.268 15 H -0.260 1.260 16 C -0.237 4.237 17 C -0.083 4.083 18 C 0.129 3.871 19 H 0.092 0.908 20 C -0.137 4.137 21 C 0.070 3.930 22 O -0.591 6.591 23 C -0.078 4.078 24 C -0.117 4.117 25 C -0.137 4.137 26 C -0.132 4.132 27 C -0.127 4.127 28 C -0.126 4.126 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.284 0.716 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.397 0.603 44 H 0.123 0.877 45 H 0.128 0.872 46 H 0.138 0.862 47 H 0.142 0.858 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.958 -11.795 -14.807 18.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.257 5.257 3 C -0.007 4.007 4 C -0.182 4.182 5 C -0.109 4.109 6 C -0.202 4.202 7 C 0.075 3.925 8 C -0.535 4.535 9 H 0.089 0.911 10 C -0.182 4.182 11 N -0.464 5.464 12 Si 0.803 3.197 13 H -0.189 1.189 14 H -0.193 1.193 15 H -0.184 1.184 16 C -0.257 4.257 17 C -0.102 4.102 18 C 0.020 3.980 19 H 0.110 0.890 20 C -0.176 4.176 21 C -0.008 4.008 22 O -0.400 6.400 23 C -0.079 4.079 24 C -0.135 4.135 25 C -0.155 4.155 26 C -0.150 4.150 27 C -0.145 4.145 28 C -0.144 4.144 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.130 0.870 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.246 0.754 44 H 0.140 0.860 45 H 0.146 0.854 46 H 0.156 0.844 47 H 0.160 0.840 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.651 -12.571 -14.214 18.986 hybrid contribution -0.181 1.478 0.419 1.547 sum -0.832 -11.092 -13.795 17.721 Atomic orbital electron populations 1.22574 0.87537 1.01487 1.00874 1.62055 1.08148 1.13821 1.41709 1.20950 0.99415 0.87267 0.93064 1.19286 0.96011 1.06286 0.96665 1.20724 0.98098 0.98586 0.93450 1.21296 0.99875 1.01852 0.97162 1.17942 0.92059 0.89452 0.93006 1.19810 0.94198 1.37409 1.02082 0.91125 1.26702 0.94042 0.93292 1.04132 1.69864 1.00988 1.36858 1.38655 0.85201 0.79246 0.78697 0.76514 1.18850 1.19295 1.18362 1.21190 1.01235 1.08520 0.94745 1.20621 0.96334 0.97518 0.95683 1.20569 0.98521 0.90855 0.88010 0.88957 1.22146 1.01138 0.96600 0.97723 1.22512 0.94853 0.96948 0.86451 1.86402 1.73567 1.37737 1.42251 1.19834 0.96694 0.94684 0.96651 1.21340 0.99775 0.95375 0.97051 1.21419 0.99592 0.94024 1.00436 1.21423 0.96207 1.00629 0.96734 1.21384 0.99787 0.95434 0.97897 1.21196 0.98524 0.94257 1.00429 0.94416 0.90649 0.92741 0.93159 0.90859 0.88318 0.88565 0.90518 0.88887 0.86987 0.90562 0.90927 0.93209 0.92571 0.75367 0.85964 0.85387 0.84378 0.83981 0.84717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 6.65 127.69 0.85 1.46 16 2 N -0.53 -14.93 3.94 -906.02 -3.57 -18.49 16 3 C 0.12 3.62 4.52 85.55 0.39 4.01 16 4 C -0.18 -7.30 5.08 -19.68 -0.10 -7.40 16 5 C -0.09 -4.16 9.67 22.22 0.21 -3.94 16 6 C -0.18 -9.80 8.66 22.73 0.20 -9.60 16 7 C 0.08 4.27 5.55 -21.29 -0.12 4.15 16 8 C -0.50 -28.03 9.06 23.46 0.21 -27.82 16 9 H 0.07 3.80 7.87 -2.91 -0.02 3.78 16 10 C 0.03 1.62 5.26 85.26 0.45 2.07 16 11 N -0.84 -45.12 10.82 21.83 0.24 -44.88 16 12 Si 0.98 39.58 29.57 68.60 2.03 41.60 16 13 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 14 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 15 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 16 C -0.24 -11.65 9.80 22.73 0.22 -11.43 16 17 C -0.08 -3.47 8.31 22.22 0.18 -3.29 16 18 C 0.13 2.97 2.15 44.17 0.09 3.07 16 19 H 0.09 2.01 7.38 -2.39 -0.02 1.99 16 20 C -0.14 -2.89 4.52 30.60 0.14 -2.75 16 21 C 0.07 1.36 5.92 71.98 0.43 1.79 16 22 O -0.59 -11.63 13.66 -148.98 -2.04 -13.66 16 23 C -0.08 -1.88 5.04 -19.87 -0.10 -1.98 16 24 C -0.12 -3.04 8.70 22.27 0.19 -2.84 16 25 C -0.14 -3.13 10.05 22.27 0.22 -2.90 16 26 C -0.13 -2.60 10.05 22.27 0.22 -2.38 16 27 C -0.13 -2.40 10.05 22.27 0.22 -2.17 16 28 C -0.13 -2.60 9.72 22.27 0.22 -2.38 16 29 H 0.04 0.93 5.47 -2.39 -0.01 0.92 16 30 H 0.08 1.84 5.20 -2.39 -0.01 1.83 16 31 H 0.05 1.71 6.90 -2.39 -0.02 1.69 16 32 H 0.05 1.36 5.16 -2.38 -0.01 1.35 16 33 H 0.07 2.12 7.55 -2.39 -0.02 2.11 16 34 H 0.10 4.23 8.06 -2.91 -0.02 4.20 16 35 H 0.10 5.51 6.21 -2.91 -0.02 5.49 16 36 H 0.28 13.94 8.30 -92.71 -0.77 13.17 16 37 H 0.09 4.37 8.06 -2.91 -0.02 4.34 16 38 H 0.11 3.98 8.06 -2.91 -0.02 3.96 16 39 H 0.08 1.57 8.12 -2.38 -0.02 1.55 16 40 H 0.07 1.66 5.73 -2.39 -0.01 1.64 16 41 H 0.05 1.05 4.13 -2.39 -0.01 1.04 16 42 H 0.06 0.98 8.11 -2.39 -0.02 0.96 16 43 H 0.40 4.33 9.12 -74.06 -0.68 3.65 16 44 H 0.12 3.39 5.11 -2.91 -0.01 3.37 16 45 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 46 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 47 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 48 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -63.89 374.82 1.10 -62.79 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: 0.30 Total: 36.98 kcal Atomic # 6 Polarization: -68.47 SS G_CDS: 4.14 Total: -64.33 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -3.33 Total: -63.38 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -2.04 Total: -13.66 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.60 kcal Total: -63.89 1.10 -62.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343556965.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.279 kcal (2) G-P(sol) polarization free energy of solvation -63.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds