Wall clock time and date at job start Tue Mar 31 2020 14:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35899 * 116.99679 * 2 1 4 4 C 1.38726 * 120.05715 * 180.02562 * 3 2 1 5 5 C 1.38148 * 119.94926 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.05004 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.94302 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.46741 * 84.10038 * 7 6 5 9 9 C 1.46909 * 111.00041 * 199.48173 * 8 7 6 10 10 C 1.52993 * 109.46997 * 72.22921 * 9 8 7 11 11 C 1.50702 * 109.46978 * 180.79373 * 10 9 8 12 12 H 1.07994 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99905 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99877 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99824 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47199 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47289 * 120.00246 * 15 13 11 18 18 H 1.48508 * 109.46764 * 239.99769 * 15 13 11 19 19 C 1.46900 * 111.00195 * 75.52905 * 8 7 6 20 20 C 1.50705 * 109.47401 * 190.00259 * 19 8 7 21 21 C 1.38240 * 119.99544 * 269.72660 * 20 19 8 22 22 C 1.38233 * 119.99640 * 179.76254 * 21 20 19 23 23 C 1.38232 * 120.00018 * 0.50723 * 22 21 20 24 24 C 1.38239 * 120.00225 * 359.74422 * 23 22 21 25 25 C 1.38232 * 120.00253 * 89.99637 * 20 19 8 26 26 C 1.38264 * 120.11516 * 0.25524 * 6 5 4 27 27 C 1.38148 * 120.05327 * 359.44958 * 26 6 5 28 28 H 1.09005 * 109.47121 * 299.99602 * 1 2 3 29 29 H 1.08997 * 109.46892 * 60.00186 * 1 2 3 30 30 H 1.09004 * 109.46439 * 180.02562 * 1 2 3 31 31 H 1.08005 * 120.03027 * 0.02562 * 4 3 2 32 32 H 1.07993 * 119.97614 * 179.97438 * 5 4 3 33 33 H 1.08995 * 109.47360 * 324.10192 * 7 6 5 34 34 H 1.08999 * 109.47416 * 204.09756 * 7 6 5 35 35 H 1.08998 * 109.47119 * 192.23198 * 9 8 7 36 36 H 1.08997 * 109.46708 * 312.23206 * 9 8 7 37 37 H 1.08996 * 109.47471 * 300.79932 * 10 9 8 38 38 H 1.09010 * 109.47036 * 60.79917 * 10 9 8 39 39 H 0.97008 * 119.99528 * 180.02562 * 14 13 11 40 40 H 1.08994 * 109.47614 * 69.99889 * 19 8 7 41 41 H 1.09001 * 109.47132 * 310.00027 * 19 8 7 42 42 H 1.08004 * 119.99948 * 359.97438 * 21 20 19 43 43 H 1.08001 * 119.99833 * 180.22481 * 22 21 20 44 44 H 1.08004 * 120.00271 * 179.72027 * 23 22 21 45 45 H 1.07993 * 120.00215 * 179.97438 * 24 23 22 46 46 H 1.07999 * 119.99667 * 359.97438 * 25 20 19 47 47 H 1.08001 * 119.97327 * 179.70308 * 26 6 5 48 48 H 1.08004 * 120.02828 * 180.25530 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4312 1.2850 -0.0005 5 6 4.0560 2.5171 0.0000 6 6 3.3017 3.6759 0.0016 7 6 3.9858 5.0187 0.0028 8 7 4.3343 5.3918 -1.3747 9 6 5.3787 6.4248 -1.3921 10 6 6.7152 5.8058 -0.9783 11 6 7.7826 6.8696 -0.9773 12 1 7.5327 7.8856 -1.2447 13 6 9.0784 6.5457 -0.6351 14 7 9.3829 5.3083 -0.3099 15 14 10.4013 7.8645 -0.6332 16 1 9.8052 9.1642 -1.0338 17 1 10.9797 7.9835 0.7293 18 1 11.4710 7.4938 -1.5943 19 6 3.1459 5.8322 -2.1175 20 6 3.4892 5.9702 -3.5784 21 6 3.9514 7.1773 -4.0687 22 6 4.2710 7.3025 -5.4077 23 6 4.1184 6.2238 -6.2585 24 6 3.6512 5.0182 -5.7693 25 6 3.3366 4.8915 -4.4293 26 6 1.9209 3.6048 0.0080 27 6 1.2914 2.3751 0.0013 28 1 -0.3634 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 4.0209 0.3801 -0.0014 32 1 5.1344 2.5752 0.0000 33 1 4.8927 4.9639 0.6048 34 1 3.3151 5.7678 0.4235 35 1 5.4650 6.8373 -2.3973 36 1 5.1150 7.2198 -0.6946 37 1 6.6248 5.3808 0.0214 38 1 6.9858 5.0202 -1.6839 39 1 10.2945 5.0805 -0.0688 40 1 2.8113 6.7945 -1.7304 41 1 2.3502 5.0966 -1.9992 42 1 4.0661 8.0214 -3.4048 43 1 4.6356 8.2445 -5.7900 44 1 4.3638 6.3229 -7.3057 45 1 3.5316 4.1756 -6.4341 46 1 2.9717 3.9497 -4.0469 47 1 1.3340 4.5114 0.0141 48 1 0.2128 2.3201 0.0022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354216752.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:58 Heat of formation + Delta-G solvation = 12.521360 kcal Electronic energy + Delta-G solvation = -27012.890637 eV Core-core repulsion = 23418.743795 eV Total energy + Delta-G solvation = -3594.146842 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 4.89 seconds Orbital eigenvalues (eV) -40.11721 -39.24395 -37.91632 -36.37820 -33.13615 -31.84641 -31.11268 -30.76190 -30.51743 -29.05096 -27.58193 -25.92187 -25.03572 -22.87705 -22.49247 -22.36295 -21.02131 -20.87135 -19.64238 -18.10960 -16.68143 -16.33967 -16.11706 -15.79997 -15.64427 -15.17355 -15.02746 -14.61536 -14.39977 -14.21213 -14.06771 -13.57674 -13.32122 -13.24813 -13.17538 -12.65929 -12.55671 -12.34848 -12.12941 -12.01003 -11.92596 -11.56560 -11.24554 -11.03509 -10.95729 -10.88598 -10.75351 -10.65209 -10.57871 -10.49518 -9.80856 -9.37584 -9.10279 -8.84027 -8.62214 -8.50424 -8.30272 -7.98994 -7.68803 -5.97067 -3.98818 1.49322 1.50759 1.63812 1.67122 3.24581 3.32323 3.39937 3.43453 3.82495 4.03104 4.46457 4.74974 4.80278 4.94570 4.97642 5.00145 5.03382 5.08649 5.18865 5.24684 5.28035 5.34210 5.38997 5.44350 5.53391 5.56094 5.73198 5.74810 5.80724 5.88315 5.90963 6.08264 6.18811 6.25112 6.27376 6.34323 6.38767 6.44130 6.54733 6.70209 6.74059 6.88024 6.91075 6.93090 7.02921 7.25263 7.41888 7.51788 7.55651 7.81887 7.94140 8.12267 8.46663 9.08423 9.64565 11.14221 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.008696 B = 0.003854 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3219.178741 B = 7262.805675 C = 9625.590401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.116 3.884 4 C -0.151 4.151 5 C -0.052 4.052 6 C -0.098 4.098 7 C 0.093 3.907 8 N -0.525 5.525 9 C 0.056 3.944 10 C 0.032 3.968 11 C -0.519 4.519 12 H 0.053 0.947 13 C 0.059 3.941 14 N -0.892 5.892 15 Si 0.889 3.111 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.090 3.910 20 C -0.066 4.066 21 C -0.109 4.109 22 C -0.121 4.121 23 C -0.126 4.126 24 C -0.125 4.125 25 C -0.098 4.098 26 C -0.081 4.081 27 C -0.212 4.212 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.128 0.872 32 H 0.136 0.864 33 H 0.095 0.905 34 H 0.036 0.964 35 H 0.070 0.930 36 H 0.019 0.981 37 H 0.015 0.985 38 H 0.024 0.976 39 H 0.259 0.741 40 H 0.034 0.966 41 H 0.077 0.923 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.247 -4.905 -3.618 20.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.071 3.929 4 C -0.170 4.170 5 C -0.071 4.071 6 C -0.099 4.099 7 C -0.034 4.034 8 N -0.249 5.249 9 C -0.071 4.071 10 C -0.005 4.005 11 C -0.558 4.558 12 H 0.071 0.929 13 C -0.142 4.142 14 N -0.531 5.531 15 Si 0.717 3.283 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.038 4.038 20 C -0.067 4.067 21 C -0.127 4.127 22 C -0.139 4.139 23 C -0.144 4.144 24 C -0.143 4.143 25 C -0.117 4.117 26 C -0.099 4.099 27 C -0.230 4.230 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.114 0.886 31 H 0.146 0.854 32 H 0.154 0.846 33 H 0.113 0.887 34 H 0.054 0.946 35 H 0.088 0.912 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.042 0.958 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.095 0.905 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.135 0.865 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.831 -5.603 -3.781 20.008 hybrid contribution 0.319 1.503 0.368 1.580 sum -18.513 -4.100 -3.413 19.266 Atomic orbital electron populations 1.22991 0.78895 1.03525 1.01179 1.86056 1.20982 1.27349 1.89103 1.19011 0.92392 0.83852 0.97645 1.20456 0.91135 0.98810 1.06564 1.21003 1.00700 0.90521 0.94832 1.19806 0.92887 0.95617 1.01607 1.21056 0.99876 0.91772 0.90714 1.62102 1.08190 1.42214 1.12359 1.22504 0.92663 0.91417 1.00487 1.19053 0.88694 0.96179 0.96614 1.21212 0.93516 0.95284 1.45787 0.92898 1.24972 0.98566 0.95253 0.95445 1.69980 1.19215 1.17478 1.46430 0.86587 0.82021 0.82118 0.77571 1.19826 1.21073 1.21031 1.21079 0.93701 0.98809 0.90169 1.19742 0.98445 0.93425 0.95062 1.21081 0.98731 0.97476 0.95426 1.21069 1.00295 0.98795 0.93754 1.21064 1.00373 0.93505 0.99460 1.21075 1.00144 0.97421 0.95622 1.20959 0.99642 0.97981 0.93105 1.20817 0.94100 0.96667 0.98344 1.21086 0.99466 0.92398 1.10073 0.92885 0.92838 0.88583 0.85425 0.84578 0.88651 0.94629 0.91208 0.96257 0.96658 0.95793 0.93118 0.94776 0.90503 0.86322 0.86399 0.86611 0.86534 0.86365 0.86389 0.86036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.92 10.50 -19.42 -0.20 -4.12 16 3 C 0.12 1.54 6.69 -39.22 -0.26 1.27 16 4 C -0.15 -2.13 9.99 -39.43 -0.39 -2.53 16 5 C -0.05 -0.79 9.72 -39.60 -0.38 -1.18 16 6 C -0.10 -1.45 5.02 -104.60 -0.52 -1.98 16 7 C 0.09 1.51 4.96 -4.97 -0.02 1.48 16 8 N -0.52 -9.28 4.37 -237.52 -1.04 -10.32 16 9 C 0.06 1.15 4.74 -3.82 -0.02 1.14 16 10 C 0.03 0.82 5.05 -27.89 -0.14 0.68 16 11 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 12 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 15 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 C 0.09 1.35 4.94 -4.97 -0.02 1.33 16 20 C -0.07 -1.02 4.93 -104.62 -0.52 -1.54 16 21 C -0.11 -1.64 7.86 -39.58 -0.31 -1.95 16 22 C -0.12 -1.68 10.05 -39.59 -0.40 -2.08 16 23 C -0.13 -1.65 10.05 -39.58 -0.40 -2.05 16 24 C -0.12 -1.67 10.05 -39.58 -0.40 -2.07 16 25 C -0.10 -1.44 9.70 -39.59 -0.38 -1.83 16 26 C -0.08 -1.03 8.41 -39.60 -0.33 -1.36 16 27 C -0.21 -2.54 9.04 -39.43 -0.36 -2.90 16 28 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 29 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 32 H 0.14 2.20 8.06 -52.49 -0.42 1.77 16 33 H 0.10 1.74 6.23 -51.93 -0.32 1.42 16 34 H 0.04 0.52 7.90 -51.93 -0.41 0.11 16 35 H 0.07 1.47 5.14 -51.93 -0.27 1.20 16 36 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 37 H 0.02 0.41 6.53 -51.93 -0.34 0.07 16 38 H 0.02 0.68 8.14 -51.92 -0.42 0.25 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.03 0.49 8.06 -51.93 -0.42 0.07 16 41 H 0.08 1.06 6.31 -51.93 -0.33 0.73 16 42 H 0.12 1.72 7.74 -52.48 -0.41 1.31 16 43 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 44 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 45 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 46 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 47 H 0.12 1.29 8.02 -52.49 -0.42 0.87 16 48 H 0.12 1.15 6.30 -52.48 -0.33 0.82 16 LS Contribution 390.86 15.07 5.89 5.89 Total: -1.00 -31.48 390.86 -11.30 -42.79 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -7.38 Total: 2.74 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: -4.29 Total: -27.67 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: -0.30 Total: -36.30 kcal Atomic # 8 Polarization: -3.92 SS G_CDS: -0.20 Total: -4.12 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.48 -11.30 -42.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354216752.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.310 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.89 seconds