Wall clock time and date at job start Tue Mar 31 2020 14:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35899 * 116.99679 * 2 1 4 4 C 1.38726 * 120.05715 * 180.02562 * 3 2 1 5 5 C 1.38148 * 119.94926 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.05004 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.94302 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.46741 * 84.10038 * 7 6 5 9 9 C 1.46909 * 111.00041 * 199.48173 * 8 7 6 10 10 C 1.52993 * 109.46997 * 72.22921 * 9 8 7 11 11 C 1.50702 * 109.46978 * 180.79373 * 10 9 8 12 12 H 1.07994 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99905 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99877 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99824 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47199 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47289 * 120.00246 * 15 13 11 18 18 H 1.48508 * 109.46764 * 239.99769 * 15 13 11 19 19 C 1.46900 * 111.00195 * 75.52905 * 8 7 6 20 20 C 1.50705 * 109.47401 * 190.00259 * 19 8 7 21 21 C 1.38240 * 119.99544 * 269.72660 * 20 19 8 22 22 C 1.38233 * 119.99640 * 179.76254 * 21 20 19 23 23 C 1.38232 * 120.00018 * 0.50723 * 22 21 20 24 24 C 1.38239 * 120.00225 * 359.74422 * 23 22 21 25 25 C 1.38232 * 120.00253 * 89.99637 * 20 19 8 26 26 C 1.38264 * 120.11516 * 0.25524 * 6 5 4 27 27 C 1.38148 * 120.05327 * 359.44958 * 26 6 5 28 28 H 1.09005 * 109.47121 * 299.99602 * 1 2 3 29 29 H 1.08997 * 109.46892 * 60.00186 * 1 2 3 30 30 H 1.09004 * 109.46439 * 180.02562 * 1 2 3 31 31 H 1.08005 * 120.03027 * 0.02562 * 4 3 2 32 32 H 1.07993 * 119.97614 * 179.97438 * 5 4 3 33 33 H 1.08995 * 109.47360 * 324.10192 * 7 6 5 34 34 H 1.08999 * 109.47416 * 204.09756 * 7 6 5 35 35 H 1.08998 * 109.47119 * 192.23198 * 9 8 7 36 36 H 1.08997 * 109.46708 * 312.23206 * 9 8 7 37 37 H 1.08996 * 109.47471 * 300.79932 * 10 9 8 38 38 H 1.09010 * 109.47036 * 60.79917 * 10 9 8 39 39 H 0.97008 * 119.99528 * 180.02562 * 14 13 11 40 40 H 1.08994 * 109.47614 * 69.99889 * 19 8 7 41 41 H 1.09001 * 109.47132 * 310.00027 * 19 8 7 42 42 H 1.08004 * 119.99948 * 359.97438 * 21 20 19 43 43 H 1.08001 * 119.99833 * 180.22481 * 22 21 20 44 44 H 1.08004 * 120.00271 * 179.72027 * 23 22 21 45 45 H 1.07993 * 120.00215 * 179.97438 * 24 23 22 46 46 H 1.07999 * 119.99667 * 359.97438 * 25 20 19 47 47 H 1.08001 * 119.97327 * 179.70308 * 26 6 5 48 48 H 1.08004 * 120.02828 * 180.25530 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4312 1.2850 -0.0005 5 6 4.0560 2.5171 0.0000 6 6 3.3017 3.6759 0.0016 7 6 3.9858 5.0187 0.0028 8 7 4.3343 5.3918 -1.3747 9 6 5.3787 6.4248 -1.3921 10 6 6.7152 5.8058 -0.9783 11 6 7.7826 6.8696 -0.9773 12 1 7.5327 7.8856 -1.2447 13 6 9.0784 6.5457 -0.6351 14 7 9.3829 5.3083 -0.3099 15 14 10.4013 7.8645 -0.6332 16 1 9.8052 9.1642 -1.0338 17 1 10.9797 7.9835 0.7293 18 1 11.4710 7.4938 -1.5943 19 6 3.1459 5.8322 -2.1175 20 6 3.4892 5.9702 -3.5784 21 6 3.9514 7.1773 -4.0687 22 6 4.2710 7.3025 -5.4077 23 6 4.1184 6.2238 -6.2585 24 6 3.6512 5.0182 -5.7693 25 6 3.3366 4.8915 -4.4293 26 6 1.9209 3.6048 0.0080 27 6 1.2914 2.3751 0.0013 28 1 -0.3634 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 4.0209 0.3801 -0.0014 32 1 5.1344 2.5752 0.0000 33 1 4.8927 4.9639 0.6048 34 1 3.3151 5.7678 0.4235 35 1 5.4650 6.8373 -2.3973 36 1 5.1150 7.2198 -0.6946 37 1 6.6248 5.3808 0.0214 38 1 6.9858 5.0202 -1.6839 39 1 10.2945 5.0805 -0.0688 40 1 2.8113 6.7945 -1.7304 41 1 2.3502 5.0966 -1.9992 42 1 4.0661 8.0214 -3.4048 43 1 4.6356 8.2445 -5.7900 44 1 4.3638 6.3229 -7.3057 45 1 3.5316 4.1756 -6.4341 46 1 2.9717 3.9497 -4.0469 47 1 1.3340 4.5114 0.0141 48 1 0.2128 2.3201 0.0022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354216752.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:53 Heat of formation + Delta-G solvation = -3.724053 kcal Electronic energy + Delta-G solvation = -27013.595091 eV Core-core repulsion = 23418.743795 eV Total energy + Delta-G solvation = -3594.851296 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.13348 -40.36103 -39.00536 -37.63510 -35.20644 -32.99239 -32.49578 -31.92134 -31.67769 -30.53345 -28.39295 -27.25666 -26.62195 -24.42691 -23.56277 -23.46673 -22.34799 -22.08728 -21.10876 -19.04079 -18.56727 -17.62680 -17.18132 -16.84438 -16.67442 -16.56985 -16.36096 -16.06489 -15.73760 -15.35308 -15.33607 -14.74378 -14.56582 -14.34210 -14.27644 -14.13930 -14.05414 -13.56855 -13.35554 -13.21836 -13.14649 -12.87868 -12.77780 -12.74395 -12.43164 -12.15050 -11.91793 -11.89491 -11.82355 -11.69747 -11.58939 -11.26741 -11.20332 -10.52488 -9.90720 -9.71497 -9.62864 -9.13590 -8.98765 -8.17818 -6.28436 0.41419 0.43626 0.55438 0.58319 1.39504 1.40016 1.52938 2.40672 2.42072 2.70227 2.93779 3.15559 3.44861 3.85395 3.88136 3.96487 4.00601 4.05366 4.22318 4.23523 4.32350 4.38824 4.40489 4.43937 4.48285 4.52365 4.61670 4.63494 4.68746 4.70803 4.77422 4.81182 4.86676 4.92763 5.13178 5.14472 5.18823 5.22732 5.32629 5.40187 5.48936 5.62099 5.67746 5.69763 5.75765 5.79449 5.83145 5.85898 6.13923 6.19290 6.33324 6.37107 6.50365 6.88861 7.40181 8.94238 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.008696 B = 0.003854 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3219.178741 B = 7262.805675 C = 9625.590401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.116 3.884 4 C -0.165 4.165 5 C -0.071 4.071 6 C -0.111 4.111 7 C 0.098 3.902 8 N -0.536 5.536 9 C 0.075 3.925 10 C 0.043 3.957 11 C -0.539 4.539 12 H 0.058 0.942 13 C 0.002 3.998 14 N -0.930 5.930 15 Si 0.962 3.038 16 H -0.261 1.261 17 H -0.278 1.278 18 H -0.280 1.280 19 C 0.096 3.904 20 C -0.085 4.085 21 C -0.126 4.126 22 C -0.131 4.131 23 C -0.129 4.129 24 C -0.129 4.129 25 C -0.112 4.112 26 C -0.073 4.073 27 C -0.202 4.202 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.117 0.883 31 H 0.129 0.871 32 H 0.109 0.891 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.021 0.979 37 H -0.007 1.007 38 H -0.015 1.015 39 H 0.262 0.738 40 H 0.045 0.955 41 H 0.092 0.908 42 H 0.118 0.882 43 H 0.136 0.864 44 H 0.143 0.857 45 H 0.140 0.860 46 H 0.121 0.879 47 H 0.143 0.857 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.414 -4.120 -4.540 22.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.071 3.929 4 C -0.183 4.183 5 C -0.089 4.089 6 C -0.112 4.112 7 C -0.029 4.029 8 N -0.260 5.260 9 C -0.052 4.052 10 C 0.006 3.994 11 C -0.578 4.578 12 H 0.076 0.924 13 C -0.196 4.196 14 N -0.570 5.570 15 Si 0.787 3.213 16 H -0.185 1.185 17 H -0.203 1.203 18 H -0.205 1.205 19 C -0.031 4.031 20 C -0.086 4.086 21 C -0.145 4.145 22 C -0.149 4.149 23 C -0.147 4.147 24 C -0.147 4.147 25 C -0.131 4.131 26 C -0.092 4.092 27 C -0.221 4.221 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.136 0.864 31 H 0.147 0.853 32 H 0.128 0.872 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.040 0.960 37 H 0.011 0.989 38 H 0.003 0.997 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.110 0.890 42 H 0.136 0.864 43 H 0.154 0.846 44 H 0.161 0.839 45 H 0.158 0.842 46 H 0.139 0.861 47 H 0.161 0.839 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -21.028 -4.821 -4.703 22.081 hybrid contribution 0.906 1.136 0.628 1.583 sum -20.122 -3.684 -4.075 20.859 Atomic orbital electron populations 1.23344 0.76436 1.05499 1.02323 1.86044 1.23528 1.26790 1.88796 1.19088 0.92080 0.84948 0.96827 1.20489 0.92282 0.98290 1.07258 1.20854 0.99649 0.91760 0.96677 1.19686 0.93993 0.94244 1.03287 1.20952 0.98966 0.93389 0.89561 1.61974 1.09136 1.41267 1.13635 1.22077 0.91357 0.91659 1.00089 1.18844 0.91388 0.94829 0.94342 1.21625 0.94508 0.95916 1.45712 0.92365 1.25923 1.01187 0.97605 0.94856 1.70125 1.19931 1.19717 1.47236 0.85446 0.78681 0.79392 0.77812 1.18515 1.20345 1.20539 1.21095 0.92576 0.99683 0.89755 1.19875 0.99424 0.93968 0.95292 1.21234 0.99456 0.97542 0.96264 1.21386 0.99980 1.00009 0.93479 1.21435 0.99422 0.93041 1.00775 1.21414 0.99374 0.98435 0.95504 1.21139 1.00135 0.97967 0.93863 1.21029 0.92985 0.98135 0.97039 1.21407 1.01041 0.91352 1.08290 0.91596 0.91669 0.86445 0.85288 0.87246 0.91931 0.92688 0.91295 0.96042 0.98867 0.99677 0.92905 0.93724 0.88974 0.86359 0.84595 0.83943 0.84231 0.86055 0.83879 0.82725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -7.65 10.50 -92.42 -0.97 -8.62 16 3 C 0.12 2.94 6.69 22.51 0.15 3.09 16 4 C -0.16 -4.80 9.99 22.36 0.22 -4.57 16 5 C -0.07 -2.30 9.72 22.25 0.22 -2.09 16 6 C -0.11 -3.34 5.02 -19.85 -0.10 -3.44 16 7 C 0.10 3.29 4.96 85.56 0.42 3.72 16 8 N -0.54 -19.46 4.37 -905.36 -3.96 -23.42 16 9 C 0.08 3.23 4.74 86.30 0.41 3.64 16 10 C 0.04 2.37 5.05 29.85 0.15 2.52 16 11 C -0.54 -31.23 9.11 25.60 0.23 -30.99 16 12 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 13 C 0.00 0.13 5.46 84.65 0.46 0.59 16 14 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16 15 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 16 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 C 0.10 2.81 4.94 85.56 0.42 3.23 16 20 C -0.09 -2.58 4.93 -19.86 -0.10 -2.68 16 21 C -0.13 -3.75 7.86 22.27 0.17 -3.58 16 22 C -0.13 -3.46 10.05 22.27 0.22 -3.24 16 23 C -0.13 -3.14 10.05 22.27 0.22 -2.92 16 24 C -0.13 -3.27 10.05 22.27 0.22 -3.05 16 25 C -0.11 -3.22 9.70 22.27 0.22 -3.00 16 26 C -0.07 -1.73 8.41 22.25 0.19 -1.54 16 27 C -0.20 -4.33 9.04 22.37 0.20 -4.13 16 28 H 0.07 0.68 7.66 -2.38 -0.02 0.66 16 29 H 0.06 0.69 7.66 -2.39 -0.02 0.67 16 30 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 32 H 0.11 4.03 8.06 -2.91 -0.02 4.00 16 33 H 0.06 2.48 6.23 -2.39 -0.01 2.46 16 34 H 0.06 1.59 7.90 -2.39 -0.02 1.58 16 35 H 0.07 2.96 5.14 -2.39 -0.01 2.95 16 36 H 0.02 0.90 8.05 -2.39 -0.02 0.88 16 37 H -0.01 -0.40 6.53 -2.39 -0.02 -0.42 16 38 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 39 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 40 H 0.04 1.21 8.06 -2.39 -0.02 1.20 16 41 H 0.09 2.40 6.31 -2.39 -0.02 2.38 16 42 H 0.12 3.40 7.74 -2.91 -0.02 3.38 16 43 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 44 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 45 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 46 H 0.12 3.29 8.06 -2.91 -0.02 3.26 16 47 H 0.14 2.64 8.02 -2.91 -0.02 2.61 16 48 H 0.16 2.26 6.30 -2.91 -0.02 2.24 16 Total: -1.00 -70.36 390.86 3.38 -66.99 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.93 Total: 22.53 kcal Atomic # 6 Polarization: -52.15 SS G_CDS: 5.06 Total: -47.10 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -3.67 Total: -80.80 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -0.97 Total: -8.62 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -70.36 3.38 -66.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354216752.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.263 kcal (2) G-P(sol) polarization free energy of solvation -70.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds