Wall clock time and date at job start Tue Mar 31 2020 16:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38274 * 119.93869 * 2 1 4 4 C 1.38127 * 120.06454 * 180.02562 * 3 2 1 5 5 C 1.38810 * 119.93685 * 359.97438 * 4 3 2 6 6 N 1.40234 * 120.06680 * 179.97438 * 5 4 3 7 7 C 1.36176 * 126.59173 * 310.00226 * 6 5 4 8 8 N 1.30840 * 108.65454 * 179.97438 * 7 6 5 9 9 C 1.33405 * 109.24179 * 359.97438 * 8 7 6 10 10 C 1.35249 * 108.08574 * 0.07338 * 9 8 7 11 11 C 1.50708 * 123.51236 * 179.75540 * 10 9 8 12 12 C 1.53560 * 107.83716 * 344.34930 * 11 10 9 13 13 N 1.46956 * 109.56645 * 48.88469 * 12 11 10 14 14 C 1.46900 * 111.00367 * 53.01524 * 13 12 11 15 15 H 1.09001 * 109.46775 * 315.76585 * 14 13 12 16 16 C 1.52996 * 109.47172 * 195.76228 * 14 13 12 17 17 C 1.52999 * 109.46827 * 75.76053 * 14 13 12 18 18 C 1.50699 * 109.47624 * 289.32783 * 17 14 13 19 19 H 1.07999 * 119.99660 * 353.98986 * 18 17 14 20 20 C 1.37870 * 120.00264 * 173.99334 * 18 17 14 21 21 N 1.31514 * 120.00138 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00086 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47193 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47448 * 119.99761 * 22 20 18 25 25 H 1.48504 * 109.46945 * 240.00021 * 22 20 18 26 26 C 1.47266 * 111.50582 * 288.68959 * 13 12 11 27 27 C 1.38819 * 119.86991 * 0.25373 * 5 4 3 28 28 C 1.38123 * 119.93382 * 359.51533 * 27 5 4 29 29 H 1.08995 * 109.47500 * 89.99070 * 1 2 3 30 30 H 1.09002 * 109.47612 * 210.00090 * 1 2 3 31 31 H 1.09007 * 109.47054 * 329.99743 * 1 2 3 32 32 H 1.07998 * 119.96990 * 359.97438 * 3 2 1 33 33 H 1.08005 * 120.02734 * 179.97438 * 4 3 2 34 34 H 1.08003 * 125.67675 * 359.95103 * 7 6 5 35 35 H 1.08998 * 109.78890 * 224.76433 * 11 10 9 36 36 H 1.08998 * 109.78421 * 103.93187 * 11 10 9 37 37 H 1.08998 * 109.45060 * 288.85254 * 12 11 10 38 38 H 1.08997 * 109.45357 * 168.91390 * 12 11 10 39 39 H 1.08997 * 109.46894 * 187.54141 * 16 14 13 40 40 H 1.08995 * 109.47117 * 307.54510 * 16 14 13 41 41 H 1.09001 * 109.47001 * 67.54523 * 16 14 13 42 42 H 1.08999 * 109.47153 * 49.32945 * 17 14 13 43 43 H 1.09005 * 109.47055 * 169.32380 * 17 14 13 44 44 H 0.97001 * 120.00035 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.69875 * 171.11709 * 26 13 12 46 46 H 1.08995 * 109.70223 * 291.67377 * 26 13 12 47 47 H 1.08002 * 120.03336 * 179.74178 * 27 5 4 48 48 H 1.08000 * 119.96792 * 180.20548 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1970 1.1982 0.0000 4 6 3.5783 1.2013 -0.0005 5 6 4.2736 -0.0001 -0.0005 6 7 5.6760 -0.0002 -0.0016 7 6 6.4871 0.7022 -0.8401 8 7 7.7322 0.4436 -0.5319 9 6 7.7633 -0.4125 0.4907 10 6 6.4877 -0.7022 0.8347 11 6 6.1208 -1.6449 1.9518 12 6 7.3714 -2.4620 2.3075 13 7 8.5171 -1.5582 2.4807 14 6 8.2046 -0.4896 3.4391 15 1 7.2099 -0.0950 3.2316 16 6 9.2363 0.6323 3.3063 17 6 8.2435 -1.0527 4.8611 18 6 7.0637 -1.9663 5.0722 19 1 6.3053 -2.0540 4.3084 20 6 6.9526 -2.6901 6.2404 21 7 7.8764 -2.5836 7.1703 22 14 5.4906 -3.8231 6.5017 23 1 4.6005 -3.7644 5.3145 24 1 5.9709 -5.2152 6.6924 25 1 4.7377 -3.3898 7.7062 26 6 8.9628 -0.9988 1.1934 27 6 3.5781 -1.2015 -0.0053 28 6 2.1969 -1.1983 0.0000 29 1 -0.3634 0.0002 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6555 2.1327 -0.0004 33 1 4.1167 2.1375 -0.0010 34 1 6.1576 1.3626 -1.6286 35 1 5.3244 -2.3130 1.6242 36 1 5.7920 -1.0762 2.8215 37 1 7.5840 -3.1682 1.5049 38 1 7.1965 -3.0083 3.2344 39 1 9.0860 1.3603 4.1035 40 1 10.2399 0.2136 3.3810 41 1 9.1180 1.1222 2.3398 42 1 9.1672 -1.6131 5.0049 43 1 8.2008 -0.2326 5.5779 44 1 7.7981 -3.0926 7.9924 45 1 9.7035 -0.2186 1.3685 46 1 9.3985 -1.7881 0.5809 47 1 4.1165 -2.1378 -0.0096 48 1 1.6553 -2.1327 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411622528.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:18 Heat of formation + Delta-G solvation = 101.879676 kcal Electronic energy + Delta-G solvation = -28289.279863 eV Core-core repulsion = 24731.300639 eV Total energy + Delta-G solvation = -3557.979224 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.42500 -39.58461 -38.26055 -34.77131 -33.24553 -32.34191 -31.45220 -31.35593 -29.82974 -28.95150 -26.93972 -26.70088 -24.44016 -23.23992 -22.83577 -22.57632 -21.95032 -20.48155 -20.05864 -18.04450 -17.58451 -16.57747 -16.06982 -15.85865 -15.26220 -15.04036 -14.82472 -14.61391 -14.24772 -14.16310 -13.90261 -13.84145 -13.42779 -13.27683 -12.93096 -12.61766 -12.48175 -12.29471 -12.01638 -11.86368 -11.70178 -11.53392 -11.41187 -11.34114 -11.15384 -10.88232 -10.58584 -10.44788 -10.36446 -10.10183 -9.85494 -9.68658 -9.33392 -9.06321 -8.89030 -8.61129 -8.31106 -7.89815 -7.49378 -5.96420 -3.95391 0.74208 1.01174 2.18501 2.72673 3.26347 3.29757 3.35265 3.38061 3.38679 4.45749 4.45977 4.51121 4.56595 4.65181 4.69346 4.78203 4.92282 5.00505 5.24661 5.30580 5.35459 5.38221 5.41045 5.49318 5.58702 5.65031 5.67237 5.77784 5.87152 5.93306 5.98672 6.02385 6.07403 6.14240 6.20591 6.22373 6.37480 6.48816 6.50232 6.56833 6.68450 6.86494 6.91639 7.04222 7.11958 7.40402 7.59301 7.74275 7.87111 8.06210 8.18074 8.25461 8.47462 9.08534 9.64416 11.15006 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.010214 B = 0.004714 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2740.608247 B = 5938.233394 C = 7944.798989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.104 4.104 4 C -0.112 4.112 5 C 0.121 3.879 6 N -0.409 5.409 7 C 0.164 3.836 8 N -0.472 5.472 9 C -0.025 4.025 10 C -0.006 4.006 11 C -0.083 4.083 12 C 0.053 3.947 13 N -0.507 5.507 14 C 0.082 3.918 15 H 0.035 0.965 16 C -0.150 4.150 17 C 0.031 3.969 18 C -0.517 4.517 19 H 0.065 0.935 20 C 0.059 3.941 21 N -0.891 5.891 22 Si 0.880 3.120 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.286 1.286 26 C 0.126 3.874 27 C -0.108 4.108 28 C -0.103 4.103 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.202 0.798 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.131 0.869 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.043 0.957 42 H 0.033 0.967 43 H 0.013 0.987 44 H 0.258 0.742 45 H 0.092 0.908 46 H 0.079 0.921 47 H 0.131 0.869 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.726 5.432 -16.506 20.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.123 4.123 4 C -0.131 4.131 5 C 0.030 3.970 6 N -0.089 5.089 7 C -0.115 4.115 8 N -0.189 5.189 9 C -0.156 4.156 10 C -0.119 4.119 11 C -0.122 4.122 12 C -0.075 4.075 13 N -0.229 5.229 14 C -0.025 4.025 15 H 0.053 0.947 16 C -0.207 4.207 17 C -0.007 4.007 18 C -0.555 4.555 19 H 0.083 0.917 20 C -0.142 4.142 21 N -0.530 5.530 22 Si 0.708 3.292 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.212 1.212 26 C -0.003 4.003 27 C -0.128 4.128 28 C -0.121 4.121 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.219 0.781 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.075 0.925 38 H 0.148 0.852 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.032 0.968 44 H 0.068 0.932 45 H 0.110 0.890 46 H 0.097 0.903 47 H 0.149 0.851 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.652 5.420 -16.508 20.380 hybrid contribution -2.301 -0.319 0.137 2.327 sum -12.953 5.101 -16.371 21.490 Atomic orbital electron populations 1.20814 0.90679 1.03216 1.02483 1.20039 0.96532 0.92996 0.98915 1.20917 0.93061 0.98056 1.00268 1.21062 0.94573 0.96673 1.00818 1.17714 0.80759 0.94562 1.03982 1.42657 1.03907 1.35680 1.26638 1.25188 0.85011 1.02035 0.99227 1.69913 1.18754 1.15551 1.14686 1.21692 0.95339 1.00813 0.97737 1.21298 0.90651 1.01898 0.98091 1.21035 1.01152 0.96172 0.93868 1.22692 0.86095 0.94779 1.03971 1.62440 1.35037 1.18674 1.06732 1.21895 0.95719 0.89529 0.95402 0.94686 1.22037 1.00206 0.98347 1.00133 1.19153 0.98073 0.95622 0.87827 1.21466 1.07392 1.24776 1.01841 0.91739 1.24979 0.95825 0.97084 0.96280 1.69971 1.33738 1.41816 1.07494 0.86730 0.83214 0.81096 0.78142 1.19807 1.20995 1.21226 1.20926 0.92326 0.98089 0.89005 1.21141 0.94561 0.97039 1.00023 1.20956 0.93101 0.98148 0.99936 0.90941 0.91211 0.91266 0.85109 0.85198 0.78137 0.91450 0.88716 0.92461 0.85190 0.92866 0.92254 0.93795 0.94891 0.96832 0.93179 0.88951 0.90336 0.85129 0.85062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.01 36.00 0.36 -0.36 16 2 C -0.08 -0.76 5.88 -104.60 -0.62 -1.38 16 3 C -0.10 -0.96 9.69 -39.61 -0.38 -1.34 16 4 C -0.11 -1.22 9.69 -39.41 -0.38 -1.61 16 5 C 0.12 1.57 5.93 -83.59 -0.50 1.08 16 6 N -0.41 -6.18 2.87 -57.85 -0.17 -6.34 16 7 C 0.16 2.40 12.33 -89.05 -1.10 1.30 16 8 N -0.47 -8.18 11.24 -10.50 -0.12 -8.29 16 9 C -0.03 -0.46 6.47 -82.89 -0.54 -0.99 16 10 C -0.01 -0.11 6.04 -81.78 -0.49 -0.60 16 11 C -0.08 -1.46 4.78 -27.59 -0.13 -1.59 16 12 C 0.05 1.00 5.28 -3.50 -0.02 0.99 16 13 N -0.51 -9.98 4.80 -227.26 -1.09 -11.07 16 14 C 0.08 1.73 1.87 -67.72 -0.13 1.60 16 15 H 0.04 0.78 5.20 -51.93 -0.27 0.51 16 16 C -0.15 -2.80 7.93 37.16 0.29 -2.51 16 17 C 0.03 0.77 4.64 -27.88 -0.13 0.64 16 18 C -0.52 -13.59 6.94 -34.44 -0.24 -13.82 16 19 H 0.06 1.60 3.95 -52.49 -0.21 1.39 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 22 Si 0.88 20.81 29.54 -169.99 -5.02 15.79 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 C 0.13 2.23 5.67 -4.69 -0.03 2.20 16 27 C -0.11 -1.30 8.94 -39.41 -0.35 -1.65 16 28 C -0.10 -1.02 9.69 -39.61 -0.38 -1.40 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 31 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 32 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 34 H 0.20 2.13 8.06 -52.48 -0.42 1.70 16 35 H 0.07 1.07 6.46 -51.93 -0.34 0.73 16 36 H 0.09 1.90 5.34 -51.93 -0.28 1.62 16 37 H 0.06 0.98 8.07 -51.93 -0.42 0.56 16 38 H 0.13 2.79 5.06 -51.93 -0.26 2.53 16 39 H 0.05 0.97 8.06 -51.93 -0.42 0.55 16 40 H 0.06 1.08 8.03 -51.93 -0.42 0.66 16 41 H 0.04 0.78 6.47 -51.93 -0.34 0.45 16 42 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.01 0.37 8.05 -51.93 -0.42 -0.05 16 44 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.09 1.60 5.49 -51.93 -0.29 1.32 16 46 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 47 H 0.13 1.57 6.99 -52.49 -0.37 1.21 16 48 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 368.60 15.07 5.55 5.55 Total: -1.00 -31.06 368.60 -11.91 -42.97 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.95 Total: 4.71 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -4.86 Total: -17.91 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.64 Total: -51.11 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.06 -11.91 -42.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411622528.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.845 kcal (2) G-P(sol) polarization free energy of solvation -31.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds