Wall clock time and date at job start Tue Mar 31 2020 16:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38274 * 119.93869 * 2 1 4 4 C 1.38127 * 120.06454 * 180.02562 * 3 2 1 5 5 C 1.38810 * 119.93685 * 359.97438 * 4 3 2 6 6 N 1.40234 * 120.06680 * 179.97438 * 5 4 3 7 7 C 1.36176 * 126.59173 * 310.00226 * 6 5 4 8 8 N 1.30840 * 108.65454 * 179.97438 * 7 6 5 9 9 C 1.33405 * 109.24179 * 359.97438 * 8 7 6 10 10 C 1.35249 * 108.08574 * 0.07338 * 9 8 7 11 11 C 1.50708 * 123.51236 * 179.75540 * 10 9 8 12 12 C 1.53560 * 107.83716 * 344.34930 * 11 10 9 13 13 N 1.46956 * 109.56645 * 48.88469 * 12 11 10 14 14 C 1.46900 * 111.00367 * 53.01524 * 13 12 11 15 15 H 1.09001 * 109.46775 * 315.76585 * 14 13 12 16 16 C 1.52996 * 109.47172 * 195.76228 * 14 13 12 17 17 C 1.52999 * 109.46827 * 75.76053 * 14 13 12 18 18 C 1.50699 * 109.47624 * 289.32783 * 17 14 13 19 19 H 1.07999 * 119.99660 * 353.98986 * 18 17 14 20 20 C 1.37870 * 120.00264 * 173.99334 * 18 17 14 21 21 N 1.31514 * 120.00138 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00086 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47193 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47448 * 119.99761 * 22 20 18 25 25 H 1.48504 * 109.46945 * 240.00021 * 22 20 18 26 26 C 1.47266 * 111.50582 * 288.68959 * 13 12 11 27 27 C 1.38819 * 119.86991 * 0.25373 * 5 4 3 28 28 C 1.38123 * 119.93382 * 359.51533 * 27 5 4 29 29 H 1.08995 * 109.47500 * 89.99070 * 1 2 3 30 30 H 1.09002 * 109.47612 * 210.00090 * 1 2 3 31 31 H 1.09007 * 109.47054 * 329.99743 * 1 2 3 32 32 H 1.07998 * 119.96990 * 359.97438 * 3 2 1 33 33 H 1.08005 * 120.02734 * 179.97438 * 4 3 2 34 34 H 1.08003 * 125.67675 * 359.95103 * 7 6 5 35 35 H 1.08998 * 109.78890 * 224.76433 * 11 10 9 36 36 H 1.08998 * 109.78421 * 103.93187 * 11 10 9 37 37 H 1.08998 * 109.45060 * 288.85254 * 12 11 10 38 38 H 1.08997 * 109.45357 * 168.91390 * 12 11 10 39 39 H 1.08997 * 109.46894 * 187.54141 * 16 14 13 40 40 H 1.08995 * 109.47117 * 307.54510 * 16 14 13 41 41 H 1.09001 * 109.47001 * 67.54523 * 16 14 13 42 42 H 1.08999 * 109.47153 * 49.32945 * 17 14 13 43 43 H 1.09005 * 109.47055 * 169.32380 * 17 14 13 44 44 H 0.97001 * 120.00035 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.69875 * 171.11709 * 26 13 12 46 46 H 1.08995 * 109.70223 * 291.67377 * 26 13 12 47 47 H 1.08002 * 120.03336 * 179.74178 * 27 5 4 48 48 H 1.08000 * 119.96792 * 180.20548 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1970 1.1982 0.0000 4 6 3.5783 1.2013 -0.0005 5 6 4.2736 -0.0001 -0.0005 6 7 5.6760 -0.0002 -0.0016 7 6 6.4871 0.7022 -0.8401 8 7 7.7322 0.4436 -0.5319 9 6 7.7633 -0.4125 0.4907 10 6 6.4877 -0.7022 0.8347 11 6 6.1208 -1.6449 1.9518 12 6 7.3714 -2.4620 2.3075 13 7 8.5171 -1.5582 2.4807 14 6 8.2046 -0.4896 3.4391 15 1 7.2099 -0.0950 3.2316 16 6 9.2363 0.6323 3.3063 17 6 8.2435 -1.0527 4.8611 18 6 7.0637 -1.9663 5.0722 19 1 6.3053 -2.0540 4.3084 20 6 6.9526 -2.6901 6.2404 21 7 7.8764 -2.5836 7.1703 22 14 5.4906 -3.8231 6.5017 23 1 4.6005 -3.7644 5.3145 24 1 5.9709 -5.2152 6.6924 25 1 4.7377 -3.3898 7.7062 26 6 8.9628 -0.9988 1.1934 27 6 3.5781 -1.2015 -0.0053 28 6 2.1969 -1.1983 0.0000 29 1 -0.3634 0.0002 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6555 2.1327 -0.0004 33 1 4.1167 2.1375 -0.0010 34 1 6.1576 1.3626 -1.6286 35 1 5.3244 -2.3130 1.6242 36 1 5.7920 -1.0762 2.8215 37 1 7.5840 -3.1682 1.5049 38 1 7.1965 -3.0083 3.2344 39 1 9.0860 1.3603 4.1035 40 1 10.2399 0.2136 3.3810 41 1 9.1180 1.1222 2.3398 42 1 9.1672 -1.6131 5.0049 43 1 8.2008 -0.2326 5.5779 44 1 7.7981 -3.0926 7.9924 45 1 9.7035 -0.2186 1.3685 46 1 9.3985 -1.7881 0.5809 47 1 4.1165 -2.1378 -0.0096 48 1 1.6553 -2.1327 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411622528.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:16 Heat of formation + Delta-G solvation = 86.219046 kcal Electronic energy + Delta-G solvation = -28289.958959 eV Core-core repulsion = 24731.300639 eV Total energy + Delta-G solvation = -3558.658319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.62787 -40.48105 -39.71096 -35.79265 -35.13857 -33.92356 -32.55880 -32.15325 -31.31549 -30.32848 -28.72099 -27.52495 -25.97942 -24.48124 -24.09322 -23.89627 -23.17150 -21.64068 -21.39447 -19.32073 -18.92086 -18.51664 -17.10950 -16.86873 -16.60812 -16.52536 -16.27115 -15.88335 -15.50380 -15.27342 -14.82310 -14.75784 -14.61245 -14.57149 -14.28816 -14.03342 -13.60372 -13.45310 -13.34952 -13.10965 -13.09389 -13.03879 -12.83183 -12.69153 -12.50881 -12.30043 -12.24260 -12.15780 -12.01944 -11.64063 -11.21815 -10.98816 -10.90171 -10.79246 -10.45101 -10.10861 -9.52839 -9.18824 -9.04901 -8.08740 -6.13394 -0.10644 0.24326 1.02465 1.41503 1.42867 1.53299 1.65455 2.00520 2.46063 2.56143 3.13183 3.26349 3.45138 3.64039 3.71290 3.81469 3.90856 4.05359 4.12894 4.18750 4.23917 4.26581 4.29623 4.37142 4.49690 4.59409 4.61508 4.64051 4.68130 4.74213 4.84486 4.87094 4.95007 5.00521 5.07503 5.10589 5.15414 5.23648 5.24270 5.29851 5.38633 5.41798 5.51925 5.56837 5.65800 5.66707 5.79194 5.94429 6.26575 6.32708 6.40557 6.47836 6.98123 6.99812 7.50348 9.04026 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.010214 B = 0.004714 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2740.608247 B = 5938.233394 C = 7944.798989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.080 4.080 3 C -0.104 4.104 4 C -0.116 4.116 5 C 0.088 3.912 6 N -0.404 5.404 7 C 0.178 3.822 8 N -0.499 5.499 9 C -0.040 4.040 10 C -0.023 4.023 11 C -0.068 4.068 12 C 0.055 3.945 13 N -0.519 5.519 14 C 0.096 3.904 15 H 0.025 0.975 16 C -0.141 4.141 17 C 0.038 3.962 18 C -0.517 4.517 19 H 0.079 0.921 20 C 0.002 3.998 21 N -0.935 5.935 22 Si 0.947 3.053 23 H -0.256 1.256 24 H -0.282 1.282 25 H -0.286 1.286 26 C 0.131 3.869 27 C -0.122 4.122 28 C -0.108 4.108 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.158 0.842 33 H 0.138 0.862 34 H 0.240 0.760 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.001 0.999 43 H -0.013 1.013 44 H 0.258 0.742 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.122 0.878 48 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.519 5.932 -18.650 24.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.081 4.081 3 C -0.122 4.122 4 C -0.135 4.135 5 C -0.002 4.002 6 N -0.083 5.083 7 C -0.102 4.102 8 N -0.217 5.217 9 C -0.170 4.170 10 C -0.137 4.137 11 C -0.108 4.108 12 C -0.073 4.073 13 N -0.241 5.241 14 C -0.012 4.012 15 H 0.043 0.957 16 C -0.198 4.198 17 C 0.001 3.999 18 C -0.555 4.555 19 H 0.097 0.903 20 C -0.195 4.195 21 N -0.576 5.576 22 Si 0.772 3.228 23 H -0.179 1.179 24 H -0.208 1.208 25 H -0.213 1.213 26 C 0.002 3.998 27 C -0.141 4.141 28 C -0.126 4.126 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.176 0.824 33 H 0.155 0.845 34 H 0.256 0.744 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.120 0.880 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.019 0.981 43 H 0.005 0.995 44 H 0.067 0.933 45 H 0.112 0.888 46 H 0.108 0.892 47 H 0.140 0.860 48 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.474 5.921 -18.675 23.777 hybrid contribution -1.510 -0.421 0.724 1.727 sum -14.984 5.499 -17.951 24.021 Atomic orbital electron populations 1.20890 0.88481 1.04082 1.03672 1.20438 0.98138 0.92531 0.96959 1.21277 0.92447 0.99416 0.99097 1.21239 0.95447 0.96203 1.00587 1.17989 0.79719 0.95819 1.06672 1.42718 1.04876 1.34856 1.25848 1.25938 0.84296 1.01033 0.98884 1.69894 1.20343 1.16348 1.15131 1.21657 0.95390 1.01507 0.98446 1.21127 0.91040 1.02840 0.98700 1.20750 1.00734 0.96083 0.93241 1.22534 0.86700 0.94967 1.03104 1.62333 1.35479 1.18409 1.07834 1.21562 0.96020 0.90285 0.93302 0.95723 1.21940 0.99585 0.97537 1.00764 1.18998 0.96433 0.94332 0.90140 1.21847 1.07631 1.24084 1.01925 0.90347 1.25826 0.98613 0.98903 0.96126 1.70120 1.36021 1.43307 1.08156 0.85666 0.79931 0.78761 0.78404 1.17936 1.20817 1.21277 1.20865 0.92481 0.98500 0.87958 1.21203 0.95555 0.96462 1.00902 1.21236 0.92369 0.99591 0.99450 0.89449 0.90644 0.90181 0.82392 0.84451 0.74439 0.89937 0.91442 0.90686 0.87991 0.92847 0.91872 0.92584 0.98085 0.99505 0.93283 0.88757 0.89241 0.86000 0.83180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.01 71.23 0.71 -0.30 16 2 C -0.08 -1.19 5.88 -19.85 -0.12 -1.31 16 3 C -0.10 -1.58 9.69 22.25 0.22 -1.37 16 4 C -0.12 -2.27 9.69 22.38 0.22 -2.06 16 5 C 0.09 2.17 5.93 38.07 0.23 2.39 16 6 N -0.40 -11.73 2.87 -336.93 -0.97 -12.69 16 7 C 0.18 4.87 12.33 179.80 2.22 7.09 16 8 N -0.50 -16.66 11.24 -187.13 -2.10 -18.76 16 9 C -0.04 -1.40 6.47 41.68 0.27 -1.13 16 10 C -0.02 -0.78 6.04 41.22 0.25 -0.53 16 11 C -0.07 -2.42 4.78 30.04 0.14 -2.28 16 12 C 0.06 2.11 5.28 86.48 0.46 2.57 16 13 N -0.52 -20.66 4.80 -872.92 -4.19 -24.85 16 14 C 0.10 4.16 1.87 44.91 0.08 4.24 16 15 H 0.02 1.13 5.20 -2.39 -0.01 1.12 16 16 C -0.14 -5.32 7.93 71.98 0.57 -4.75 16 17 C 0.04 2.03 4.64 29.85 0.14 2.17 16 18 C -0.52 -27.93 6.94 25.60 0.18 -27.75 16 19 H 0.08 3.95 3.95 -2.91 -0.01 3.94 16 20 C 0.00 0.13 5.46 84.65 0.46 0.60 16 21 N -0.93 -56.68 13.29 21.44 0.28 -56.39 16 22 Si 0.95 43.23 29.54 68.60 2.03 45.26 16 23 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 26 C 0.13 4.58 5.67 85.54 0.49 5.06 16 27 C -0.12 -2.76 8.94 22.38 0.20 -2.56 16 28 C -0.11 -1.89 9.69 22.25 0.22 -1.67 16 29 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.61 8.08 -2.39 -0.02 0.59 16 31 H 0.08 0.56 8.08 -2.38 -0.02 0.54 16 32 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 34 H 0.24 4.31 8.06 -2.91 -0.02 4.29 16 35 H 0.08 2.59 6.46 -2.39 -0.02 2.58 16 36 H 0.07 2.75 5.34 -2.39 -0.01 2.74 16 37 H 0.07 2.55 8.07 -2.39 -0.02 2.53 16 38 H 0.10 4.46 5.06 -2.39 -0.01 4.45 16 39 H 0.05 1.98 8.06 -2.39 -0.02 1.96 16 40 H 0.06 2.31 8.03 -2.39 -0.02 2.29 16 41 H 0.06 1.98 6.47 -2.39 -0.02 1.96 16 42 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 43 H -0.01 -0.76 8.05 -2.38 -0.02 -0.78 16 44 H 0.26 14.85 8.31 -92.71 -0.77 14.07 16 45 H 0.09 3.22 5.49 -2.39 -0.01 3.21 16 46 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 47 H 0.12 2.87 6.99 -2.91 -0.02 2.85 16 48 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -68.91 368.60 2.95 -65.96 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.97 Total: 23.07 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: 6.92 Total: -21.59 kcal Atomic # 7 Polarization: -105.73 SS G_CDS: -6.97 Total: -112.70 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -68.91 2.95 -65.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411622528.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.184 kcal (2) G-P(sol) polarization free energy of solvation -68.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds