Wall clock time and date at job start Tue Mar 31 2020 14:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35890 * 116.99832 * 2 1 4 4 C 1.36596 * 119.56845 * 359.97400 * 3 2 1 5 5 C 1.40417 * 119.62283 * 180.02562 * 4 3 2 6 6 C 1.40584 * 121.24384 * 180.02562 * 5 4 3 7 7 C 1.36085 * 119.65875 * 179.97438 * 6 5 4 8 8 C 1.39374 * 120.98445 * 0.02562 * 7 6 5 9 9 C 1.36101 * 121.00212 * 0.02562 * 8 7 6 10 10 C 1.40535 * 119.66833 * 359.94592 * 9 8 7 11 11 C 1.40544 * 121.22299 * 180.29986 * 10 9 8 12 12 C 1.36014 * 119.73549 * 180.27224 * 11 10 9 13 13 C 1.50699 * 119.53895 * 179.78000 * 12 11 10 14 14 N 1.46505 * 109.46662 * 259.72700 * 13 12 11 15 15 C 1.36938 * 119.99701 * 269.99519 * 14 13 12 16 16 H 1.08002 * 119.99541 * 139.60976 * 15 14 13 17 17 C 1.38807 * 120.00187 * 319.59927 * 15 14 13 18 18 N 1.31619 * 120.00153 * 342.80737 * 17 15 14 19 19 Si 1.86804 * 119.99952 * 162.80172 * 17 15 14 20 20 H 1.48501 * 109.46893 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47126 * 120.00169 * 19 17 15 22 22 H 1.48501 * 109.47298 * 240.00397 * 19 17 15 23 23 C 1.46495 * 119.99933 * 90.00199 * 14 13 12 24 24 C 1.55240 * 110.57967 * 240.02773 * 23 14 13 25 25 C 1.54889 * 102.58900 * 203.33948 * 24 23 14 26 26 C 1.54257 * 104.31345 * 37.93083 * 25 24 23 27 27 C 1.53876 * 106.60073 * 336.32750 * 26 25 24 28 28 H 1.09001 * 109.47118 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47802 * 300.00489 * 1 2 3 30 30 H 1.09004 * 109.47184 * 60.00411 * 1 2 3 31 31 H 1.08001 * 120.19036 * 0.04367 * 4 3 2 32 32 H 1.08004 * 120.16808 * 359.96161 * 6 5 4 33 33 H 1.07998 * 119.50469 * 180.02562 * 7 6 5 34 34 H 1.08008 * 119.49981 * 179.97438 * 8 7 6 35 35 H 1.07999 * 120.16590 * 179.97438 * 9 8 7 36 36 H 1.08007 * 120.13628 * 0.04739 * 11 10 9 37 37 H 1.08997 * 109.47217 * 139.72650 * 13 12 11 38 38 H 1.08997 * 109.46915 * 19.72554 * 13 12 11 39 39 H 0.97003 * 120.00150 * 179.97438 * 18 17 15 40 40 H 1.09000 * 110.43407 * 2.61406 * 23 14 13 41 41 H 1.09009 * 110.89531 * 85.05087 * 24 23 14 42 42 H 1.08998 * 110.76730 * 321.57346 * 24 23 14 43 43 H 1.09006 * 110.48805 * 279.18756 * 25 24 23 44 44 H 1.08998 * 110.48460 * 156.68224 * 25 24 23 45 45 H 1.09008 * 110.03061 * 95.60790 * 26 25 24 46 46 H 1.08996 * 110.03852 * 216.98867 * 26 25 24 47 47 H 1.09001 * 110.03207 * 119.28236 * 27 26 25 48 48 H 1.08999 * 110.02789 * 240.66293 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2933 2.3507 -0.0005 5 6 1.9295 3.6025 -0.0011 6 6 1.1885 4.7971 -0.0011 7 6 1.8384 5.9927 -0.0011 8 6 3.2309 6.0525 -0.0016 9 6 3.9812 4.9170 -0.0027 10 6 3.3460 3.6634 -0.0021 11 6 4.0887 2.4703 0.0032 12 6 3.4426 1.2734 -0.0020 13 6 4.2434 -0.0032 -0.0014 14 7 4.2998 -0.5449 -1.3614 15 6 3.3368 -1.4186 -1.7909 16 1 2.9446 -1.3395 -2.7940 17 6 2.8650 -2.4060 -0.9370 18 7 3.5513 -2.7289 0.1387 19 14 1.2559 -3.2765 -1.3145 20 1 0.6831 -2.7342 -2.5727 21 1 1.5054 -4.7320 -1.4717 22 1 0.3002 -3.0557 -0.1995 23 6 5.3865 -0.1519 -2.2619 24 6 4.8202 0.5388 -3.5316 25 6 5.9523 0.3233 -4.5665 26 6 6.4772 -1.0961 -4.2675 27 6 6.1174 -1.3983 -2.8023 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3635 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 0.2150 2.2896 -0.0003 32 1 0.1089 4.7661 -0.0013 33 1 1.2667 6.9090 -0.0007 34 1 3.7220 7.0144 -0.0021 35 1 5.0594 4.9790 -0.0035 36 1 5.1683 2.5036 0.0076 37 1 3.7696 -0.7290 0.6595 38 1 5.2545 0.2024 0.3501 39 1 3.2214 -3.4187 0.7356 40 1 6.0860 0.5081 -1.7488 41 1 4.6552 1.6018 -3.3552 42 1 3.9007 0.0531 -3.8582 43 1 6.7432 1.0601 -4.4257 44 1 5.5573 0.3783 -5.5809 45 1 5.9960 -1.8187 -4.9268 46 1 7.5583 -1.1305 -4.4021 47 1 5.4617 -2.2674 -2.7504 48 1 7.0240 -1.5799 -2.2251 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449032809.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:20 Heat of formation + Delta-G solvation = 21.606067 kcal Electronic energy + Delta-G solvation = -28807.102621 eV Core-core repulsion = 25213.349722 eV Total energy + Delta-G solvation = -3593.752900 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 5.21 seconds Orbital eigenvalues (eV) -40.19080 -38.27667 -37.59515 -35.52853 -34.04476 -32.19661 -31.12524 -29.92862 -28.48178 -27.80748 -26.88966 -26.64731 -25.50090 -22.93033 -22.29564 -21.44765 -20.89787 -19.77437 -19.07215 -17.77495 -16.72272 -16.52606 -15.79419 -15.32164 -15.08956 -14.81008 -14.66294 -14.43583 -14.18589 -14.09512 -13.39345 -13.14275 -12.95201 -12.77495 -12.70271 -12.62015 -12.48507 -11.77484 -11.44718 -11.37581 -11.14826 -11.02511 -10.97334 -10.69515 -10.64686 -10.50786 -10.35247 -10.28216 -10.11387 -10.02183 -9.92243 -9.83038 -9.63357 -9.45196 -9.37467 -8.37400 -7.62925 -7.25793 -6.44807 -5.71096 -3.29970 0.98721 1.53410 2.50596 3.30559 3.41375 3.45008 3.47519 3.98762 4.50661 4.60609 4.96180 5.12918 5.27091 5.39010 5.39051 5.42108 5.46139 5.46664 5.51297 5.56045 5.60172 5.71307 5.76968 5.84172 5.90766 5.96481 6.06485 6.21226 6.25842 6.28616 6.33323 6.38616 6.42800 6.52681 6.55288 6.57704 6.63496 6.66962 6.72325 6.81240 6.89100 7.03059 7.08672 7.12483 7.20692 7.25686 7.36311 7.43956 7.72584 7.92029 8.12392 8.62841 9.26439 9.88825 10.46448 11.29580 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.010778 B = 0.005679 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.227113 B = 4929.039727 C = 6732.318552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.264 6.264 3 C 0.176 3.824 4 C -0.244 4.244 5 C -0.019 4.019 6 C -0.119 4.119 7 C -0.123 4.123 8 C -0.144 4.144 9 C -0.094 4.094 10 C -0.077 4.077 11 C -0.095 4.095 12 C -0.081 4.081 13 C 0.178 3.822 14 N -0.563 5.563 15 C -0.237 4.237 16 H 0.054 0.946 17 C 0.036 3.964 18 N -0.885 5.885 19 Si 0.887 3.113 20 H -0.278 1.278 21 H -0.295 1.295 22 H -0.286 1.286 23 C 0.174 3.826 24 C -0.134 4.134 25 C -0.122 4.122 26 C -0.120 4.120 27 C -0.131 4.131 28 H 0.092 0.908 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.122 0.878 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.111 0.889 38 H 0.033 0.967 39 H 0.252 0.748 40 H 0.049 0.951 41 H 0.048 0.952 42 H 0.070 0.930 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.047 0.953 47 H 0.084 0.916 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.027 11.260 -0.699 11.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.174 6.174 3 C 0.128 3.872 4 C -0.263 4.263 5 C -0.019 4.019 6 C -0.137 4.137 7 C -0.141 4.141 8 C -0.162 4.162 9 C -0.112 4.112 10 C -0.077 4.077 11 C -0.115 4.115 12 C -0.085 4.085 13 C 0.052 3.948 14 N -0.280 5.280 15 C -0.367 4.367 16 H 0.072 0.928 17 C -0.164 4.164 18 N -0.527 5.527 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.223 1.223 22 H -0.213 1.213 23 C 0.067 3.933 24 C -0.174 4.174 25 C -0.160 4.160 26 C -0.158 4.158 27 C -0.170 4.170 28 H 0.110 0.890 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.140 0.860 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.128 0.872 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.066 0.934 47 H 0.103 0.897 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.960 10.852 -0.568 10.909 hybrid contribution -1.306 -0.194 -0.263 1.346 sum -2.266 10.658 -0.831 10.928 Atomic orbital electron populations 1.23052 0.80850 1.03364 1.00245 1.86541 1.18911 1.25438 1.86511 1.18709 0.92173 0.84272 0.91999 1.20862 0.99281 0.91726 1.14472 1.17688 0.92382 0.92899 0.98954 1.20871 0.99023 0.91924 1.01846 1.20656 0.94548 0.97362 1.01552 1.20628 0.93959 0.97985 1.03676 1.20942 0.99287 0.91758 0.99229 1.18043 0.92610 0.93728 1.03310 1.20696 0.99048 0.90433 1.01310 1.20476 0.91656 0.98696 0.97678 1.20049 0.95088 0.89821 0.89860 1.43733 1.25474 1.48681 1.10086 1.18745 1.13165 1.05939 0.98856 0.92817 1.25012 0.97787 0.95739 0.97895 1.69898 1.36763 1.31048 1.14978 0.86552 0.85098 0.78918 0.77680 1.20320 1.22301 1.21333 1.21293 0.88961 0.92984 0.90065 1.22945 0.98174 0.99409 0.96861 1.22273 0.98362 0.96824 0.98575 1.22066 0.98958 0.96508 0.98249 1.22490 0.99623 1.01759 0.93108 0.88996 0.93521 0.93206 0.86024 0.86598 0.86955 0.86915 0.86281 0.85844 0.87179 0.94860 0.93768 0.93280 0.93346 0.91176 0.92808 0.93107 0.92826 0.93420 0.89725 0.93786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.63 101.05 0.97 1.32 16 2 O -0.26 -5.58 7.18 -19.39 -0.14 -5.72 16 3 C 0.18 3.55 6.63 -39.59 -0.26 3.29 16 4 C -0.24 -4.34 8.74 -39.36 -0.34 -4.68 16 5 C -0.02 -0.32 5.74 -106.84 -0.61 -0.93 16 6 C -0.12 -1.72 9.77 -39.47 -0.39 -2.10 16 7 C -0.12 -1.60 9.95 -39.93 -0.40 -2.00 16 8 C -0.14 -1.88 9.95 -39.93 -0.40 -2.27 16 9 C -0.09 -1.35 9.77 -39.48 -0.39 -1.74 16 10 C -0.08 -1.31 5.74 -106.81 -0.61 -1.92 16 11 C -0.10 -1.71 9.35 -39.51 -0.37 -2.08 16 12 C -0.08 -1.66 5.44 -104.83 -0.57 -2.23 16 13 C 0.18 4.01 5.05 -5.19 -0.03 3.98 16 14 N -0.56 -13.04 2.43 -164.93 -0.40 -13.44 16 15 C -0.24 -6.02 6.81 -15.06 -0.10 -6.12 16 16 H 0.05 1.43 6.71 -52.49 -0.35 1.08 16 17 C 0.04 0.94 3.97 -17.43 -0.07 0.87 16 18 N -0.88 -24.03 11.41 55.49 0.63 -23.40 16 19 Si 0.89 20.86 28.23 -169.99 -4.80 16.07 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.30 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -6.53 6.37 56.52 0.36 -6.17 16 23 C 0.17 3.56 3.39 -66.08 -0.22 3.33 16 24 C -0.13 -2.54 6.47 -24.55 -0.16 -2.70 16 25 C -0.12 -1.95 6.82 -25.08 -0.17 -2.13 16 26 C -0.12 -1.98 6.80 -25.62 -0.17 -2.16 16 27 C -0.13 -2.58 6.41 -25.61 -0.16 -2.75 16 28 H 0.09 1.56 6.53 -51.93 -0.34 1.22 16 29 H 0.05 0.67 7.63 -51.93 -0.40 0.27 16 30 H 0.05 0.76 7.63 -51.93 -0.40 0.36 16 31 H 0.12 1.89 6.19 -52.49 -0.32 1.57 16 32 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 33 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.11 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.12 1.98 7.99 -52.48 -0.42 1.56 16 37 H 0.11 2.83 5.24 -51.93 -0.27 2.56 16 38 H 0.03 0.71 7.73 -51.93 -0.40 0.31 16 39 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 40 H 0.05 0.96 7.84 -51.93 -0.41 0.55 16 41 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 42 H 0.07 1.47 6.63 -51.93 -0.34 1.13 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 46 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.08 1.95 6.92 -51.93 -0.36 1.59 16 48 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 372.69 15.07 5.62 5.62 Total: -1.00 -27.51 372.69 -10.96 -38.47 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.42 Total: 5.42 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -4.45 Total: -23.01 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.23 Total: -36.85 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.14 Total: -5.72 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.80 Total: 16.07 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -27.51 -10.96 -38.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449032809.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.081 kcal (2) G-P(sol) polarization free energy of solvation -27.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.21 seconds