Wall clock time and date at job start Tue Mar 31 2020 14:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35890 * 116.99832 * 2 1 4 4 C 1.36596 * 119.56845 * 359.97400 * 3 2 1 5 5 C 1.40417 * 119.62283 * 180.02562 * 4 3 2 6 6 C 1.40584 * 121.24384 * 180.02562 * 5 4 3 7 7 C 1.36085 * 119.65875 * 179.97438 * 6 5 4 8 8 C 1.39374 * 120.98445 * 0.02562 * 7 6 5 9 9 C 1.36101 * 121.00212 * 0.02562 * 8 7 6 10 10 C 1.40535 * 119.66833 * 359.94592 * 9 8 7 11 11 C 1.40544 * 121.22299 * 180.29986 * 10 9 8 12 12 C 1.36014 * 119.73549 * 180.27224 * 11 10 9 13 13 C 1.50699 * 119.53895 * 179.78000 * 12 11 10 14 14 N 1.46505 * 109.46662 * 259.72700 * 13 12 11 15 15 C 1.36938 * 119.99701 * 269.99519 * 14 13 12 16 16 H 1.08002 * 119.99541 * 139.60976 * 15 14 13 17 17 C 1.38807 * 120.00187 * 319.59927 * 15 14 13 18 18 N 1.31619 * 120.00153 * 342.80737 * 17 15 14 19 19 Si 1.86804 * 119.99952 * 162.80172 * 17 15 14 20 20 H 1.48501 * 109.46893 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47126 * 120.00169 * 19 17 15 22 22 H 1.48501 * 109.47298 * 240.00397 * 19 17 15 23 23 C 1.46495 * 119.99933 * 90.00199 * 14 13 12 24 24 C 1.55240 * 110.57967 * 240.02773 * 23 14 13 25 25 C 1.54889 * 102.58900 * 203.33948 * 24 23 14 26 26 C 1.54257 * 104.31345 * 37.93083 * 25 24 23 27 27 C 1.53876 * 106.60073 * 336.32750 * 26 25 24 28 28 H 1.09001 * 109.47118 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47802 * 300.00489 * 1 2 3 30 30 H 1.09004 * 109.47184 * 60.00411 * 1 2 3 31 31 H 1.08001 * 120.19036 * 0.04367 * 4 3 2 32 32 H 1.08004 * 120.16808 * 359.96161 * 6 5 4 33 33 H 1.07998 * 119.50469 * 180.02562 * 7 6 5 34 34 H 1.08008 * 119.49981 * 179.97438 * 8 7 6 35 35 H 1.07999 * 120.16590 * 179.97438 * 9 8 7 36 36 H 1.08007 * 120.13628 * 0.04739 * 11 10 9 37 37 H 1.08997 * 109.47217 * 139.72650 * 13 12 11 38 38 H 1.08997 * 109.46915 * 19.72554 * 13 12 11 39 39 H 0.97003 * 120.00150 * 179.97438 * 18 17 15 40 40 H 1.09000 * 110.43407 * 2.61406 * 23 14 13 41 41 H 1.09009 * 110.89531 * 85.05087 * 24 23 14 42 42 H 1.08998 * 110.76730 * 321.57346 * 24 23 14 43 43 H 1.09006 * 110.48805 * 279.18756 * 25 24 23 44 44 H 1.08998 * 110.48460 * 156.68224 * 25 24 23 45 45 H 1.09008 * 110.03061 * 95.60790 * 26 25 24 46 46 H 1.08996 * 110.03852 * 216.98867 * 26 25 24 47 47 H 1.09001 * 110.03207 * 119.28236 * 27 26 25 48 48 H 1.08999 * 110.02789 * 240.66293 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2933 2.3507 -0.0005 5 6 1.9295 3.6025 -0.0011 6 6 1.1885 4.7971 -0.0011 7 6 1.8384 5.9927 -0.0011 8 6 3.2309 6.0525 -0.0016 9 6 3.9812 4.9170 -0.0027 10 6 3.3460 3.6634 -0.0021 11 6 4.0887 2.4703 0.0032 12 6 3.4426 1.2734 -0.0020 13 6 4.2434 -0.0032 -0.0014 14 7 4.2998 -0.5449 -1.3614 15 6 3.3368 -1.4186 -1.7909 16 1 2.9446 -1.3395 -2.7940 17 6 2.8650 -2.4060 -0.9370 18 7 3.5513 -2.7289 0.1387 19 14 1.2559 -3.2765 -1.3145 20 1 0.6831 -2.7342 -2.5727 21 1 1.5054 -4.7320 -1.4717 22 1 0.3002 -3.0557 -0.1995 23 6 5.3865 -0.1519 -2.2619 24 6 4.8202 0.5388 -3.5316 25 6 5.9523 0.3233 -4.5665 26 6 6.4772 -1.0961 -4.2675 27 6 6.1174 -1.3983 -2.8023 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3635 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 0.2150 2.2896 -0.0003 32 1 0.1089 4.7661 -0.0013 33 1 1.2667 6.9090 -0.0007 34 1 3.7220 7.0144 -0.0021 35 1 5.0594 4.9790 -0.0035 36 1 5.1683 2.5036 0.0076 37 1 3.7696 -0.7290 0.6595 38 1 5.2545 0.2024 0.3501 39 1 3.2214 -3.4187 0.7356 40 1 6.0860 0.5081 -1.7488 41 1 4.6552 1.6018 -3.3552 42 1 3.9007 0.0531 -3.8582 43 1 6.7432 1.0601 -4.4257 44 1 5.5573 0.3783 -5.5809 45 1 5.9960 -1.8187 -4.9268 46 1 7.5583 -1.1305 -4.4021 47 1 5.4617 -2.2674 -2.7504 48 1 7.0240 -1.5799 -2.2251 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449032809.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:16 Heat of formation + Delta-G solvation = 10.286343 kcal Electronic energy + Delta-G solvation = -28807.593481 eV Core-core repulsion = 25213.349722 eV Total energy + Delta-G solvation = -3594.243760 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -41.50444 -39.58979 -39.16594 -36.92623 -35.63789 -33.52039 -32.83861 -31.33670 -29.75105 -29.31717 -28.23624 -28.16668 -27.23827 -24.51540 -23.53921 -22.69865 -22.37434 -21.24838 -20.70169 -19.09198 -18.28461 -17.92873 -17.28393 -16.86893 -16.60866 -16.33070 -16.07002 -15.75501 -15.70676 -15.37575 -15.03960 -14.48467 -14.31498 -14.21761 -14.09282 -14.00149 -13.89779 -13.17186 -13.05057 -12.88413 -12.64708 -12.56567 -12.51253 -12.40176 -12.14270 -11.88671 -11.82292 -11.77261 -11.74223 -11.61329 -11.44594 -11.24341 -11.11785 -11.04065 -10.65987 -10.33076 -8.96374 -8.52218 -8.33734 -7.65566 -5.28478 -0.23610 0.28873 1.25253 1.40358 1.45520 1.53237 2.20527 2.56646 2.67471 3.29850 3.47888 3.76391 3.81487 4.00451 4.02842 4.07888 4.17301 4.19662 4.23443 4.33359 4.35508 4.38938 4.47918 4.52075 4.61527 4.67583 4.71681 4.78198 4.86378 4.87364 4.93959 4.95483 5.00481 5.12180 5.21464 5.23503 5.25396 5.30693 5.34948 5.44040 5.58362 5.62329 5.65882 5.72463 5.73279 5.76692 5.85747 5.93822 5.99267 6.19701 6.64254 6.76099 7.35264 8.02658 8.55656 9.30951 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.010778 B = 0.005679 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.227113 B = 4929.039727 C = 6732.318552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.299 6.299 3 C 0.146 3.854 4 C -0.238 4.238 5 C -0.037 4.037 6 C -0.131 4.131 7 C -0.113 4.113 8 C -0.136 4.136 9 C -0.103 4.103 10 C -0.096 4.096 11 C -0.085 4.085 12 C -0.110 4.110 13 C 0.187 3.813 14 N -0.575 5.575 15 C -0.224 4.224 16 H 0.035 0.965 17 C 0.002 3.998 18 N -0.914 5.914 19 Si 0.924 3.076 20 H -0.277 1.277 21 H -0.305 1.305 22 H -0.277 1.277 23 C 0.166 3.834 24 C -0.126 4.126 25 C -0.111 4.111 26 C -0.113 4.113 27 C -0.128 4.128 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.140 0.860 32 H 0.136 0.864 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.075 0.925 38 H 0.032 0.968 39 H 0.245 0.755 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.041 0.959 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.051 0.949 46 H 0.074 0.926 47 H 0.043 0.957 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.868 15.267 -1.615 15.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.211 6.211 3 C 0.099 3.901 4 C -0.257 4.257 5 C -0.038 4.038 6 C -0.149 4.149 7 C -0.130 4.130 8 C -0.154 4.154 9 C -0.121 4.121 10 C -0.096 4.096 11 C -0.104 4.104 12 C -0.113 4.113 13 C 0.061 3.939 14 N -0.292 5.292 15 C -0.355 4.355 16 H 0.053 0.947 17 C -0.195 4.195 18 N -0.558 5.558 19 Si 0.755 3.245 20 H -0.202 1.202 21 H -0.233 1.233 22 H -0.203 1.203 23 C 0.060 3.940 24 C -0.166 4.166 25 C -0.149 4.149 26 C -0.151 4.151 27 C -0.167 4.167 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.157 0.843 32 H 0.154 0.846 33 H 0.166 0.834 34 H 0.166 0.834 35 H 0.158 0.842 36 H 0.154 0.846 37 H 0.093 0.907 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.070 0.930 46 H 0.092 0.908 47 H 0.062 0.938 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.811 14.896 -1.493 14.992 hybrid contribution -1.345 -1.156 0.049 1.774 sum -2.155 13.739 -1.444 13.982 Atomic orbital electron populations 1.23182 0.79363 1.03430 1.01912 1.86465 1.20774 1.26595 1.87265 1.18870 0.92379 0.84684 0.94151 1.21073 1.00069 0.91409 1.13148 1.18016 0.92894 0.93600 0.99264 1.21146 1.00172 0.91477 1.02074 1.21145 0.94987 0.98126 0.98787 1.21107 0.94151 0.98974 1.01147 1.21218 1.00673 0.91047 0.99192 1.18279 0.92894 0.94408 1.04002 1.20861 0.99758 0.90208 0.99611 1.20265 0.91974 0.98218 1.00866 1.19731 0.94923 0.90332 0.88890 1.43843 1.25937 1.48993 1.10476 1.18595 1.13141 1.05822 0.97893 0.94705 1.25361 0.99642 0.96506 0.98007 1.70014 1.37922 1.31936 1.15963 0.85955 0.83326 0.77440 0.77777 1.20161 1.23283 1.20331 1.21484 0.88655 0.93520 0.90384 1.22789 0.98048 0.98764 0.96970 1.22236 0.97627 0.96750 0.98309 1.22016 1.00669 0.96957 0.95437 1.22401 0.98658 0.99826 0.95848 0.89735 0.91249 0.92018 0.84264 0.84615 0.83442 0.83441 0.84215 0.84556 0.90697 0.94927 0.94529 0.92340 0.93183 0.94067 0.90499 0.91464 0.92972 0.90757 0.93819 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 9.63 113.37 1.09 1.65 16 2 O -0.30 -13.22 7.18 -92.31 -0.66 -13.88 16 3 C 0.15 6.06 6.63 22.27 0.15 6.20 16 4 C -0.24 -8.36 8.74 22.42 0.20 -8.17 16 5 C -0.04 -1.22 5.74 -21.30 -0.12 -1.34 16 6 C -0.13 -3.35 9.77 22.34 0.22 -3.13 16 7 C -0.11 -2.37 9.95 22.04 0.22 -2.16 16 8 C -0.14 -2.86 9.95 22.05 0.22 -2.64 16 9 C -0.10 -2.62 9.77 22.33 0.22 -2.40 16 10 C -0.10 -3.10 5.74 -21.28 -0.12 -3.22 16 11 C -0.09 -3.04 9.35 22.32 0.21 -2.83 16 12 C -0.11 -4.63 5.44 -20.00 -0.11 -4.74 16 13 C 0.19 8.90 5.05 85.63 0.43 9.33 16 14 N -0.57 -27.90 2.43 -675.71 -1.64 -29.54 16 15 C -0.22 -11.97 6.81 84.03 0.57 -11.40 16 16 H 0.04 1.98 6.71 -2.91 -0.02 1.96 16 17 C 0.00 0.13 3.97 84.86 0.34 0.47 16 18 N -0.91 -52.61 11.41 21.65 0.25 -52.37 16 19 Si 0.92 44.65 28.23 68.60 1.94 46.59 16 20 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 21 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 22 H -0.28 -12.79 6.37 99.48 0.63 -12.16 16 23 C 0.17 6.91 3.39 46.19 0.16 7.06 16 24 C -0.13 -4.74 6.47 32.01 0.21 -4.54 16 25 C -0.11 -3.30 6.82 31.67 0.22 -3.08 16 26 C -0.11 -3.57 6.80 31.32 0.21 -3.36 16 27 C -0.13 -5.16 6.41 31.32 0.20 -4.96 16 28 H 0.08 2.94 6.53 -2.39 -0.02 2.93 16 29 H 0.07 1.98 7.63 -2.39 -0.02 1.96 16 30 H 0.06 1.89 7.63 -2.39 -0.02 1.87 16 31 H 0.14 4.18 6.19 -2.91 -0.02 4.17 16 32 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 33 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 35 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 36 H 0.14 4.31 7.99 -2.91 -0.02 4.28 16 37 H 0.08 4.14 5.24 -2.39 -0.01 4.12 16 38 H 0.03 1.47 7.73 -2.39 -0.02 1.45 16 39 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 40 H 0.06 2.29 7.84 -2.39 -0.02 2.27 16 41 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.04 1.77 6.63 -2.39 -0.02 1.76 16 43 H 0.08 1.96 8.14 -2.38 -0.02 1.95 16 44 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 46 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.04 2.11 6.92 -2.39 -0.02 2.09 16 48 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -63.84 372.69 5.25 -58.58 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.87 Total: 23.87 kcal Atomic # 6 Polarization: -37.75 SS G_CDS: 4.50 Total: -33.25 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -1.40 Total: -81.91 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.66 Total: -13.88 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.94 Total: 46.59 kcal Total: -63.84 5.25 -58.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449032809.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.871 kcal (2) G-P(sol) polarization free energy of solvation -63.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds