Wall clock time and date at job start Tue Mar 31 2020 16:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00358 * 2 1 4 4 H 1.48492 * 109.47457 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47175 * 299.99916 * 3 2 1 6 6 H 1.48498 * 109.47059 * 59.99637 * 3 2 1 7 7 C 1.38798 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00068 * 180.02562 * 7 2 1 9 9 S 1.76207 * 119.99893 * 0.02562 * 7 2 1 10 10 C 1.80998 * 99.99956 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47087 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46855 * 179.97438 * 11 10 9 13 13 N 1.46907 * 109.46906 * 179.97438 * 12 11 10 14 14 C 1.48561 * 110.99758 * 69.87312 * 13 12 11 15 15 C 1.53893 * 104.43741 * 158.87210 * 14 13 12 16 16 C 1.52647 * 110.08746 * 94.25186 * 15 14 13 17 17 C 1.53190 * 109.22350 * 66.24455 * 16 15 14 18 18 O 1.42919 * 109.28528 * 56.81352 * 17 16 15 19 19 C 1.42914 * 114.18329 * 298.27461 * 18 17 16 20 20 C 1.52593 * 110.20666 * 216.16210 * 15 14 13 21 21 C 1.53667 * 105.62577 * 335.30790 * 15 14 13 22 22 H 1.08993 * 112.48664 * 239.03660 * 21 15 14 23 23 C 1.54689 * 108.98673 * 112.92871 * 21 15 14 24 24 C 1.54801 * 103.01127 * 211.17927 * 23 21 15 25 25 C 1.54208 * 104.18411 * 38.01668 * 24 23 21 26 26 C 1.48439 * 110.99901 * 185.85288 * 13 12 11 27 27 H 1.09005 * 111.86349 * 323.72926 * 26 13 12 28 28 H 0.97002 * 119.99867 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47266 * 59.99694 * 10 9 7 30 30 H 1.09000 * 109.46648 * 299.99895 * 10 9 7 31 31 H 1.09002 * 109.47418 * 59.99664 * 11 10 9 32 32 H 1.09000 * 109.47191 * 299.99440 * 11 10 9 33 33 H 1.09000 * 109.47105 * 60.00621 * 12 11 10 34 34 H 1.09000 * 109.47365 * 299.99428 * 12 11 10 35 35 H 1.08994 * 110.44153 * 40.13244 * 14 13 12 36 36 H 1.08998 * 110.54855 * 277.66233 * 14 13 12 37 37 H 1.08992 * 109.51345 * 186.16565 * 16 15 14 38 38 H 1.08995 * 109.51442 * 306.32246 * 16 15 14 39 39 H 1.08997 * 109.50220 * 296.86484 * 17 16 15 40 40 H 1.09002 * 109.52860 * 176.77175 * 17 16 15 41 41 H 1.08999 * 109.49678 * 301.65540 * 19 18 17 42 42 H 1.09003 * 109.49153 * 181.58031 * 19 18 17 43 43 H 1.08998 * 109.50239 * 53.66644 * 20 15 14 44 44 H 1.08995 * 109.50577 * 173.74018 * 20 15 14 45 45 H 1.09000 * 110.70869 * 329.56310 * 23 21 15 46 46 H 1.08997 * 110.70606 * 92.80285 * 23 21 15 47 47 H 1.09001 * 110.48937 * 279.34080 * 24 23 21 48 48 H 1.08994 * 110.48837 * 156.68993 * 24 23 21 49 49 H 1.08996 * 110.00666 * 216.38609 * 25 24 23 50 50 H 1.09000 * 110.00452 * 95.03960 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8916 2.3964 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5156 -3.8915 0.0021 11 6 1.9791 -5.3243 0.0017 12 6 3.1511 -6.3078 0.0024 13 7 2.6359 -7.6835 0.0026 14 6 2.0027 -8.0151 -1.2998 15 6 2.0168 -9.5530 -1.3528 16 6 0.6925 -10.1076 -0.8343 17 6 -0.4317 -9.7105 -1.7961 18 8 -0.1212 -10.1865 -3.1074 19 6 1.0768 -9.6381 -3.6609 20 6 2.2678 -10.0289 -2.7807 21 6 3.1699 -9.9883 -0.4350 22 1 3.9228 -10.5749 -0.9612 23 6 2.5847 -10.7208 0.7954 24 6 3.5973 -10.3827 1.9164 25 6 3.9915 -8.9177 1.6403 26 6 3.7403 -8.6651 0.1446 27 1 4.6390 -8.3440 -0.3821 28 1 -0.4850 0.8401 -0.0004 29 1 3.1236 -3.7310 0.8925 30 1 3.1249 -3.7318 -0.8875 31 1 1.3713 -5.4845 -0.8889 32 1 1.3696 -5.4843 0.8911 33 1 3.7591 -6.1478 0.8929 34 1 3.7603 -6.1478 -0.8872 35 1 2.5850 -7.6005 -2.1226 36 1 0.9790 -7.6424 -1.3333 37 1 0.7520 -11.1942 -0.7727 38 1 0.4879 -9.6968 0.1543 39 1 -0.5270 -8.6249 -1.8161 40 1 -1.3705 -10.1521 -1.4615 41 1 0.9951 -8.5519 -3.7009 42 1 1.2247 -10.0293 -4.6675 43 1 3.1740 -9.5614 -3.1661 44 1 2.3862 -11.1124 -2.7877 45 1 1.5955 -10.3339 1.0399 46 1 2.5470 -11.7962 0.6217 47 1 4.4705 -11.0318 1.8503 48 1 3.1269 -10.4732 2.8954 49 1 5.0455 -8.7651 1.8723 50 1 3.3765 -8.2467 2.2400 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451619395.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:47 Heat of formation + Delta-G solvation = -77.488679 kcal Electronic energy + Delta-G solvation = -26561.632815 eV Core-core repulsion = 23099.026796 eV Total energy + Delta-G solvation = -3462.606019 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.182 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.09146 -39.29452 -36.84306 -35.23394 -34.62546 -33.47073 -32.18383 -29.42716 -28.64299 -27.89888 -27.55408 -25.56570 -24.57082 -23.90948 -22.03397 -21.25239 -20.39782 -19.66006 -19.42980 -17.68515 -17.04568 -16.91591 -16.91446 -16.48554 -16.16691 -15.94011 -15.70977 -15.42981 -14.96012 -14.93600 -14.79867 -14.57289 -14.02919 -13.86997 -13.57155 -13.28713 -13.16243 -12.97522 -12.83617 -12.61965 -12.56000 -12.47883 -12.26387 -12.21979 -11.97510 -11.91113 -11.80786 -11.66381 -11.56939 -11.31253 -11.21698 -11.16952 -11.04979 -10.85693 -10.33918 -10.29421 -9.44085 -8.68601 -8.39049 -6.15546 1.30096 1.37021 1.48087 1.72501 2.26454 2.95164 2.95442 3.00028 3.30610 3.39007 3.46307 3.66603 3.93918 3.98422 4.01618 4.11397 4.15010 4.24082 4.26165 4.29779 4.33453 4.39982 4.46836 4.54540 4.58221 4.61451 4.65364 4.69923 4.74579 4.75980 4.79377 4.83350 4.87720 4.93887 4.99610 5.06582 5.12275 5.15483 5.16234 5.20119 5.26171 5.27995 5.33122 5.35333 5.38112 5.40911 5.65218 5.99159 6.11946 6.16627 6.29078 7.03151 8.70662 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.016195 B = 0.002735 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.463400 B =10236.923549 C =11301.300537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.015 3.985 3 Si 0.995 3.005 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.538 4.538 8 H 0.072 0.928 9 S -0.197 6.197 10 C -0.087 4.087 11 C -0.076 4.076 12 C 0.061 3.939 13 N -0.505 5.505 14 C 0.037 3.963 15 C -0.054 4.054 16 C -0.129 4.129 17 C 0.051 3.949 18 O -0.400 6.400 19 C 0.055 3.945 20 C -0.136 4.136 21 C -0.077 4.077 22 H 0.097 0.903 23 C -0.119 4.119 24 C -0.118 4.118 25 C -0.111 4.111 26 C 0.057 3.943 27 H 0.056 0.944 28 H 0.272 0.728 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.035 0.965 35 H 0.040 0.960 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.043 0.957 40 H 0.102 0.898 41 H 0.043 0.957 42 H 0.105 0.895 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.064 0.936 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.717 -25.882 -1.984 27.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.190 4.190 3 Si 0.817 3.183 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.686 4.686 8 H 0.090 0.910 9 S 0.031 5.969 10 C -0.236 4.236 11 C -0.115 4.115 12 C -0.069 4.069 13 N -0.229 5.229 14 C -0.090 4.090 15 C -0.054 4.054 16 C -0.166 4.166 17 C -0.025 4.025 18 O -0.320 6.320 19 C -0.022 4.022 20 C -0.174 4.174 21 C -0.096 4.096 22 H 0.115 0.885 23 C -0.156 4.156 24 C -0.155 4.155 25 C -0.149 4.149 26 C -0.051 4.051 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.061 0.939 40 H 0.120 0.880 41 H 0.061 0.939 42 H 0.123 0.877 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.084 0.916 49 H 0.082 0.918 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.942 -26.111 -1.629 26.828 hybrid contribution 2.237 2.075 -0.558 3.102 sum 8.179 -24.035 -2.187 25.483 Atomic orbital electron populations 1.70165 1.07689 1.28502 1.48008 1.26080 0.96050 1.03133 0.93737 0.84956 0.78410 0.76600 0.78346 1.18666 1.19613 1.19604 1.23066 0.94690 0.92002 1.58835 0.91008 1.84651 1.14023 1.01156 1.97020 1.23151 1.00134 0.97624 1.02720 1.21060 0.97850 0.90291 1.02281 1.22137 0.95568 0.88195 1.00974 1.65391 1.25137 1.01605 1.30778 1.23269 0.99809 0.95509 0.90446 1.20903 0.95885 0.93342 0.95289 1.22239 0.93474 1.01714 0.99223 1.22830 0.98805 0.98463 0.82431 1.87881 1.43109 1.69123 1.31853 1.22712 0.84141 0.97705 0.97640 1.22165 0.98703 1.02468 0.94022 1.22676 0.96040 0.95114 0.95761 0.88472 1.22745 0.99533 0.99860 0.93493 1.22302 0.99159 0.95144 0.98916 1.22067 1.00785 0.97730 0.94351 1.23325 0.92536 0.92292 0.96992 0.92564 0.91941 0.91939 0.92259 0.92467 0.91723 0.90461 0.94651 0.94206 0.91174 0.90082 0.89858 0.93907 0.87966 0.93899 0.87717 0.90348 0.90023 0.90262 0.90754 0.91029 0.91613 0.91756 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.32 13.22 21.65 0.29 -55.04 16 2 C 0.01 0.86 5.49 84.86 0.47 1.32 16 3 Si 1.00 44.32 29.55 68.60 2.03 46.35 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 7 C -0.54 -31.55 9.50 67.95 0.65 -30.91 16 8 H 0.07 4.07 7.80 -2.91 -0.02 4.04 16 9 S -0.20 -10.70 21.44 -56.49 -1.21 -11.91 16 10 C -0.09 -3.57 5.67 71.98 0.41 -3.16 16 11 C -0.08 -2.52 5.27 30.59 0.16 -2.36 16 12 C 0.06 1.61 4.78 86.30 0.41 2.03 16 13 N -0.51 -11.53 4.78 -854.67 -4.09 -15.62 16 14 C 0.04 0.81 3.80 86.28 0.33 1.14 16 15 C -0.05 -0.89 0.67 -51.91 -0.03 -0.93 16 16 C -0.13 -2.13 3.53 30.54 0.11 -2.02 16 17 C 0.05 0.96 6.64 72.05 0.48 1.44 16 18 O -0.40 -8.47 10.75 -148.98 -1.60 -10.07 16 19 C 0.05 0.94 6.65 72.04 0.48 1.42 16 20 C -0.14 -2.00 4.66 30.51 0.14 -1.86 16 21 C -0.08 -1.16 3.49 -9.20 -0.03 -1.20 16 22 H 0.10 1.26 7.82 -2.39 -0.02 1.24 16 23 C -0.12 -1.66 5.08 31.78 0.16 -1.50 16 24 C -0.12 -1.65 6.83 31.62 0.22 -1.44 16 25 C -0.11 -1.95 6.45 31.26 0.20 -1.74 16 26 C 0.06 1.05 3.12 45.66 0.14 1.20 16 27 H 0.06 1.06 8.00 -2.38 -0.02 1.04 16 28 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 29 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.06 2.40 8.14 -2.40 -0.02 2.38 16 31 H 0.06 1.96 7.26 -2.39 -0.02 1.94 16 32 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.08 1.99 8.07 -2.39 -0.02 1.97 16 34 H 0.04 0.92 7.88 -2.39 -0.02 0.90 16 35 H 0.04 0.89 7.47 -2.39 -0.02 0.87 16 36 H 0.07 1.72 5.79 -2.39 -0.01 1.71 16 37 H 0.08 1.20 7.54 -2.39 -0.02 1.18 16 38 H 0.08 1.48 6.29 -2.39 -0.02 1.47 16 39 H 0.04 0.90 6.50 -2.39 -0.02 0.88 16 40 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.04 0.81 7.55 -2.39 -0.02 0.79 16 42 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.08 1.06 8.04 -2.39 -0.02 1.04 16 44 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.08 1.27 5.07 -2.39 -0.01 1.26 16 46 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.06 1.30 7.88 -2.39 -0.02 1.28 16 Total: -1.00 -66.70 381.40 0.59 -66.11 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.89 Total: 18.76 kcal Atomic # 6 Polarization: -42.86 SS G_CDS: 4.28 Total: -38.57 kcal Atomic # 7 Polarization: -66.86 SS G_CDS: -3.80 Total: -70.66 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -1.60 Total: -10.07 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: -10.70 SS G_CDS: -1.21 Total: -11.91 kcal Total: -66.70 0.59 -66.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451619395.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.381 kcal (2) G-P(sol) polarization free energy of solvation -66.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds