Wall clock time and date at job start Tue Mar 31 2020 14:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 119.99907 * 2 1 4 4 C 1.34777 * 119.99870 * 180.02562 * 2 1 3 5 5 O 1.21512 * 120.00120 * 359.97438 * 4 2 1 6 6 O 1.34640 * 119.99811 * 180.02562 * 4 2 1 7 7 C 1.45200 * 116.99857 * 179.97438 * 6 4 2 8 8 H 1.09004 * 110.78119 * 328.21633 * 7 6 4 9 9 C 1.55151 * 110.72390 * 204.97466 * 7 6 4 10 10 C 1.55129 * 101.48852 * 205.97042 * 9 7 6 11 11 N 1.47427 * 104.71855 * 37.29325 * 10 9 7 12 12 C 1.34778 * 125.64271 * 155.82245 * 11 10 9 13 13 O 1.21587 * 119.99760 * 184.76015 * 12 11 10 14 14 N 1.34777 * 120.00282 * 4.75454 * 12 11 10 15 15 C 1.46497 * 119.99924 * 185.05070 * 14 12 11 16 16 C 1.53011 * 109.46941 * 175.08038 * 15 14 12 17 17 C 1.50695 * 115.55064 * 56.02604 * 16 15 14 18 18 H 1.08000 * 119.99810 * 219.94027 * 17 16 15 19 19 C 1.37870 * 120.00342 * 39.66103 * 17 16 15 20 20 N 1.31516 * 119.99942 * 11.50049 * 19 17 16 21 21 Si 1.86797 * 120.00241 * 191.49571 * 19 17 16 22 22 H 1.48502 * 109.47225 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47121 * 120.00430 * 21 19 17 24 24 H 1.48500 * 109.47266 * 240.00231 * 21 19 17 25 25 C 1.53003 * 117.51404 * 201.72617 * 16 15 14 26 26 C 1.52998 * 117.49546 * 270.35147 * 16 15 14 27 27 C 1.47017 * 108.70646 * 335.55303 * 11 10 9 28 28 H 1.09000 * 109.46947 * 270.00368 * 1 2 3 29 29 H 1.09004 * 109.46670 * 29.99790 * 1 2 3 30 30 H 1.08997 * 109.46698 * 149.99736 * 1 2 3 31 31 H 1.09003 * 109.47445 * 269.99766 * 3 2 1 32 32 H 1.08998 * 109.47289 * 30.00801 * 3 2 1 33 33 H 1.09009 * 109.46947 * 149.99888 * 3 2 1 34 34 H 1.09006 * 111.00093 * 324.21011 * 9 7 6 35 35 H 1.09000 * 111.00326 * 88.02054 * 9 7 6 36 36 H 1.09000 * 110.49380 * 278.45198 * 10 9 7 37 37 H 1.09007 * 110.34027 * 156.05660 * 10 9 7 38 38 H 0.96998 * 119.99786 * 5.05058 * 14 12 11 39 39 H 1.08997 * 109.47615 * 55.07839 * 15 14 12 40 40 H 1.09005 * 109.47272 * 295.07657 * 15 14 12 41 41 H 0.97006 * 120.00087 * 184.99237 * 20 19 17 42 42 H 1.08997 * 117.49579 * 214.96743 * 25 16 15 43 43 H 1.08999 * 117.50210 * 359.97438 * 25 16 15 44 44 H 1.08999 * 117.50266 * 359.97438 * 26 16 15 45 45 H 1.09002 * 117.49814 * 144.99750 * 26 16 15 46 46 H 1.09000 * 109.88493 * 120.70777 * 27 11 10 47 47 H 1.09000 * 109.88246 * 241.72051 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5314 -2.2195 -0.0005 6 8 3.4853 -1.1672 0.0000 7 6 4.1445 -2.4610 0.0000 8 1 3.5480 -3.1989 0.5364 9 6 5.5656 -2.3531 0.6132 10 6 6.2890 -3.5418 -0.0724 11 7 5.7509 -3.5666 -1.4447 12 6 6.3692 -4.0909 -2.5215 13 8 5.8691 -3.9790 -3.6240 14 7 7.5420 -4.7390 -2.3760 15 6 8.2688 -5.2119 -3.5568 16 6 9.6146 -5.7989 -3.1260 17 6 9.5442 -6.9059 -2.1059 18 1 10.2692 -6.9507 -1.3068 19 6 8.5508 -7.8583 -2.1895 20 7 7.8071 -7.9395 -3.2712 21 14 8.2611 -9.0333 -0.7666 22 1 9.2235 -8.7360 0.3246 23 1 6.8744 -8.8672 -0.2618 24 1 8.4548 -10.4304 -1.2310 25 6 10.7208 -5.8786 -4.1799 26 6 10.8099 -4.8467 -3.0539 27 6 4.4254 -2.9305 -1.4430 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3632 -0.8900 -0.5139 31 1 2.3793 1.5834 -1.0277 32 1 1.6085 2.0283 0.5139 33 1 3.1500 1.1384 0.5139 34 1 6.0329 -1.4036 0.3517 35 1 5.5356 -2.4867 1.6946 36 1 6.0605 -4.4754 0.4416 37 1 7.3655 -3.3710 -0.0900 38 1 7.9047 -4.8922 -1.4896 39 1 8.4375 -4.3778 -4.2379 40 1 7.6822 -5.9799 -4.0611 41 1 7.0621 -8.5601 -3.3021 42 1 11.3977 -6.7318 -4.1354 43 1 10.4899 -5.5133 -5.1806 44 1 10.6378 -3.8022 -3.3137 45 1 11.5455 -5.0209 -2.2686 46 1 4.4240 -2.0748 -2.1182 47 1 3.6686 -3.6501 -1.7551 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496621052.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:40 Heat of formation + Delta-G solvation = -86.834419 kcal Electronic energy + Delta-G solvation = -28326.011218 eV Core-core repulsion = 24316.706723 eV Total energy + Delta-G solvation = -4009.304495 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.87972 -41.07108 -39.16483 -38.37008 -37.19487 -36.67848 -34.86247 -34.14254 -32.11661 -30.03141 -29.01367 -27.92530 -27.38076 -26.79949 -24.46643 -22.93723 -22.62228 -21.61772 -21.16754 -20.79227 -19.34956 -19.25033 -18.19730 -18.03197 -17.60903 -17.14707 -16.84508 -16.64012 -15.93016 -15.84747 -15.57553 -15.09341 -15.01608 -14.63410 -14.54902 -14.36586 -13.99739 -13.75767 -13.51842 -13.51316 -13.42959 -13.41733 -13.10262 -13.03902 -12.87537 -12.83873 -12.66630 -12.26201 -12.03095 -11.91242 -11.86792 -11.63514 -11.51589 -11.15394 -11.06850 -10.61155 -10.18457 -9.95025 -9.87775 -9.42193 -8.05836 -6.18916 0.92624 1.40903 1.46657 1.55578 1.58760 1.67982 2.19068 2.43232 2.80295 2.99433 3.18336 3.36323 3.39583 3.68404 3.86081 4.07377 4.19723 4.24859 4.26659 4.32965 4.48385 4.49913 4.52703 4.54593 4.63407 4.74689 4.75810 4.78981 4.84674 4.87021 4.94493 4.97128 4.98208 5.08114 5.22275 5.31354 5.32323 5.36719 5.54120 5.60464 5.82309 5.90521 6.07758 6.13413 6.38249 6.82663 7.09175 7.13757 7.45757 7.65322 8.92973 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.018519 B = 0.002840 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.561578 B = 9857.883131 C =10455.000500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.601 5.601 3 C 0.078 3.922 4 C 0.634 3.366 5 O -0.606 6.606 6 O -0.346 6.346 7 C 0.105 3.895 8 H 0.103 0.897 9 C -0.102 4.102 10 C 0.092 3.908 11 N -0.638 5.638 12 C 0.711 3.289 13 O -0.647 6.647 14 N -0.700 5.700 15 C 0.188 3.812 16 C 0.010 3.990 17 C -0.500 4.500 18 H 0.064 0.936 19 C 0.033 3.967 20 N -0.895 5.895 21 Si 0.943 3.057 22 H -0.256 1.256 23 H -0.285 1.285 24 H -0.291 1.291 25 C -0.197 4.197 26 C -0.178 4.178 27 C 0.116 3.884 28 H 0.071 0.929 29 H 0.109 0.891 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.129 0.871 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.405 0.595 39 H 0.022 0.978 40 H 0.065 0.935 41 H 0.256 0.744 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.062 0.938 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.261 19.682 13.159 25.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.341 5.341 3 C -0.064 4.064 4 C 0.389 3.611 5 O -0.498 6.498 6 O -0.258 6.258 7 C 0.048 3.952 8 H 0.120 0.880 9 C -0.140 4.140 10 C -0.030 4.030 11 N -0.378 5.378 12 C 0.413 3.587 13 O -0.530 6.530 14 N -0.352 5.352 15 C 0.064 3.936 16 C 0.009 3.991 17 C -0.537 4.537 18 H 0.082 0.918 19 C -0.168 4.168 20 N -0.532 5.532 21 Si 0.769 3.231 22 H -0.180 1.180 23 H -0.212 1.212 24 H -0.218 1.218 25 C -0.236 4.236 26 C -0.215 4.215 27 C -0.009 4.009 28 H 0.089 0.911 29 H 0.128 0.872 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.147 0.853 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.241 0.759 39 H 0.041 0.959 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.103 0.897 45 H 0.107 0.893 46 H 0.080 0.920 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.780 19.253 12.189 24.797 hybrid contribution -0.288 -1.308 0.233 1.359 sum -10.068 17.945 12.422 24.035 Atomic orbital electron populations 1.21894 0.75067 1.04290 1.03283 1.46815 1.07871 1.04259 1.75201 1.22048 0.97761 0.83376 1.03203 1.18472 0.81396 0.84870 0.76407 1.90990 1.69269 1.32026 1.57477 1.86312 1.18621 1.34642 1.86252 1.23630 0.94761 0.82410 0.94401 0.87958 1.22950 0.89663 0.99244 1.02144 1.22665 1.00506 0.99604 0.80239 1.47306 1.19610 1.62588 1.08345 1.15677 0.81103 0.78954 0.82965 1.90818 1.68278 1.67781 1.26149 1.44810 1.20833 1.58320 1.11283 1.20526 0.92784 0.94957 0.85338 1.19187 0.86095 0.96235 0.97547 1.20720 1.13988 1.08351 1.10641 0.91793 1.25587 0.96335 0.97969 0.96929 1.70093 1.18756 1.37258 1.27122 0.85742 0.77993 0.78726 0.80628 1.17992 1.21161 1.21793 1.22901 1.05767 1.01084 0.93846 1.22921 1.02944 0.94608 1.01025 1.21923 0.83847 0.97136 0.97955 0.91075 0.87226 0.92244 0.91842 0.87667 0.90321 0.87933 0.85268 0.90156 0.88303 0.75935 0.95946 0.91726 0.93445 0.90573 0.90967 0.89699 0.89301 0.91992 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.15 10.44 127.77 1.33 2.48 16 2 N -0.60 -10.13 3.27 ******* -3.28 -13.41 16 3 C 0.08 0.72 10.44 127.77 1.33 2.05 16 4 C 0.63 15.75 8.39 129.79 1.09 16.84 16 5 O -0.61 -19.46 15.25 19.80 0.30 -19.16 16 6 O -0.35 -7.85 8.79 -55.50 -0.49 -8.34 16 7 C 0.10 2.46 3.22 31.78 0.10 2.56 16 8 H 0.10 2.51 7.30 -2.38 -0.02 2.50 16 9 C -0.10 -1.70 6.83 32.06 0.22 -1.48 16 10 C 0.09 2.13 6.45 86.93 0.56 2.69 16 11 N -0.64 -21.89 3.32 -829.30 -2.76 -24.65 16 12 C 0.71 31.75 8.48 179.05 1.52 33.27 16 13 O -0.65 -34.72 16.68 -3.99 -0.07 -34.79 16 14 N -0.70 -30.64 5.36 -478.52 -2.56 -33.21 16 15 C 0.19 9.25 4.94 86.38 0.43 9.67 16 16 C 0.01 0.47 1.89 -52.93 -0.10 0.37 16 17 C -0.50 -24.97 8.32 25.60 0.21 -24.75 16 18 H 0.06 3.11 7.84 -2.91 -0.02 3.09 16 19 C 0.03 1.72 5.24 84.65 0.44 2.17 16 20 N -0.90 -50.37 10.99 21.45 0.24 -50.13 16 21 Si 0.94 41.19 29.56 68.60 2.03 43.22 16 22 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 23 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 24 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 25 C -0.20 -8.60 9.96 30.59 0.30 -8.29 16 26 C -0.18 -6.96 9.93 30.59 0.30 -6.66 16 27 C 0.12 3.70 6.65 86.73 0.58 4.28 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.11 0.58 8.07 -2.38 -0.02 0.57 16 30 H 0.06 1.00 7.42 -2.39 -0.02 0.98 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.10 0.34 8.07 -2.39 -0.02 0.32 16 33 H 0.08 0.77 7.38 -2.38 -0.02 0.75 16 34 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.10 2.08 7.58 -2.38 -0.02 2.06 16 38 H 0.40 16.13 6.68 -92.71 -0.62 15.51 16 39 H 0.02 1.09 8.10 -2.39 -0.02 1.07 16 40 H 0.06 3.74 6.03 -2.38 -0.01 3.72 16 41 H 0.26 14.18 8.32 -92.70 -0.77 13.40 16 42 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 43 H 0.07 3.02 8.14 -2.39 -0.02 3.01 16 44 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 45 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 46 H 0.06 2.08 8.06 -2.39 -0.02 2.06 16 47 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -75.03 387.99 2.08 -72.94 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: 0.35 Total: 32.31 kcal Atomic # 6 Polarization: 26.88 SS G_CDS: 8.33 Total: 35.21 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -8.37 Total: -121.39 kcal Atomic # 8 Polarization: -62.03 SS G_CDS: -0.25 Total: -62.29 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -75.03 2.08 -72.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496621052.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.891 kcal (2) G-P(sol) polarization free energy of solvation -75.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds