Wall clock time and date at job start Tue Mar 31 2020 13:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.46931 * 2 1 4 4 C 1.36930 * 120.00040 * 275.65338 * 3 2 1 5 5 H 1.08003 * 120.00230 * 34.00629 * 4 3 2 6 6 C 1.38817 * 120.00042 * 214.00936 * 4 3 2 7 7 N 1.31615 * 119.99771 * 22.91454 * 6 4 3 8 8 Si 1.86800 * 119.99849 * 202.91527 * 6 4 3 9 9 H 1.48500 * 109.47263 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46837 * 119.99760 * 8 6 4 11 11 H 1.48496 * 109.47150 * 239.99674 * 8 6 4 12 12 C 1.46503 * 119.99618 * 95.65382 * 3 2 1 13 13 C 1.50696 * 109.47404 * 269.99632 * 12 3 2 14 14 C 1.38261 * 119.94420 * 89.99823 * 13 12 3 15 15 C 1.38143 * 120.05511 * 179.97438 * 14 13 12 16 16 C 1.38730 * 119.94658 * 0.02562 * 15 14 13 17 17 O 1.35903 * 120.05475 * 179.97438 * 16 15 14 18 18 C 1.42901 * 116.99602 * 179.97438 * 17 16 15 19 19 C 1.50704 * 109.46998 * 180.02562 * 18 17 16 20 20 C 1.38236 * 120.00193 * 89.99626 * 19 18 17 21 21 C 1.38235 * 119.99898 * 180.27772 * 20 19 18 22 22 C 1.38230 * 119.99985 * 359.49265 * 21 20 19 23 23 C 1.50698 * 119.99974 * 180.23459 * 22 21 20 24 24 C 1.38233 * 120.00038 * 0.51382 * 22 21 20 25 25 C 1.38236 * 120.00243 * 359.73870 * 24 22 21 26 26 C 1.38732 * 119.88886 * 0.27025 * 16 15 14 27 27 C 1.38148 * 119.93835 * 359.47224 * 26 16 15 28 28 H 1.09000 * 109.46964 * 60.00442 * 1 2 3 29 29 H 1.08996 * 109.47213 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47333 * 300.00230 * 1 2 3 31 31 H 1.08998 * 109.47333 * 239.99770 * 2 1 3 32 32 H 1.09000 * 109.46964 * 119.99558 * 2 1 3 33 33 H 0.97004 * 119.99592 * 180.02562 * 7 6 4 34 34 H 1.09006 * 109.46760 * 149.99993 * 12 3 2 35 35 H 1.08998 * 109.47674 * 30.00066 * 12 3 2 36 36 H 1.08000 * 119.97392 * 359.97438 * 14 13 12 37 37 H 1.08005 * 120.02484 * 179.97438 * 15 14 13 38 38 H 1.08997 * 109.47448 * 60.00445 * 18 17 16 39 39 H 1.09002 * 109.47435 * 299.99870 * 18 17 16 40 40 H 1.08002 * 119.99655 * 0.02562 * 20 19 18 41 41 H 1.07997 * 119.99715 * 179.72714 * 21 20 19 42 42 H 1.08998 * 109.47399 * 270.27705 * 23 22 21 43 43 H 1.09000 * 109.47033 * 30.27618 * 23 22 21 44 44 H 1.09001 * 109.47139 * 150.27772 * 23 22 21 45 45 H 1.08002 * 120.00069 * 179.72628 * 24 22 21 46 46 H 1.07999 * 120.00331 * 179.97438 * 25 24 22 47 47 H 1.07994 * 120.03027 * 179.72308 * 26 16 15 48 48 H 1.08002 * 119.96855 * 180.23247 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1364 2.0657 -1.1801 5 1 1.4323 1.8888 -1.9798 6 6 3.1610 2.9869 -1.3486 7 7 4.2516 2.8993 -0.6171 8 14 2.9919 4.3509 -2.6137 9 1 1.6803 4.2301 -3.2996 10 1 3.0752 5.6689 -1.9345 11 1 4.0854 4.2385 -3.6120 12 6 2.3803 2.0301 1.2626 13 6 1.1714 2.7240 1.8355 14 6 0.3275 2.0438 2.6939 15 6 -0.7810 2.6778 3.2209 16 6 -1.0474 3.9979 2.8877 17 8 -2.1376 4.6235 3.4044 18 6 -2.3492 5.9829 3.0180 19 6 -3.5953 6.5065 3.6847 20 6 -3.5132 7.1136 4.9239 21 6 -4.6569 7.5887 5.5379 22 6 -5.8813 7.4661 4.9081 23 6 -7.1274 7.9888 5.5751 24 6 -5.9634 6.8589 3.6689 25 6 -4.8204 6.3791 3.0572 26 6 -0.2026 4.6763 2.0213 27 6 0.9076 4.0394 1.5013 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.9675 3.5433 -0.7347 34 1 3.1677 2.7620 1.0823 35 1 2.7366 1.2794 1.9680 36 1 0.5351 1.0160 2.9527 37 1 -1.4401 2.1459 3.8910 38 1 -2.4648 6.0393 1.9356 39 1 -1.4936 6.5850 3.3239 40 1 -2.5559 7.2130 5.4141 41 1 -4.5933 8.0590 6.5080 42 1 -7.5661 7.2041 6.1914 43 1 -6.8728 8.8434 6.2020 44 1 -7.8447 8.2971 4.8144 45 1 -6.9206 6.7592 3.1788 46 1 -4.8846 5.9044 2.0892 47 1 -0.4103 5.7025 1.7569 48 1 1.5677 4.5683 0.8297 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000511519554.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:58 Heat of formation + Delta-G solvation = 24.063940 kcal Electronic energy + Delta-G solvation = -26502.252486 eV Core-core repulsion = 22908.606167 eV Total energy + Delta-G solvation = -3593.646318 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.06256 -39.26546 -37.42405 -35.47591 -33.58517 -31.90091 -31.17577 -30.71593 -30.32285 -28.98819 -28.16786 -25.43965 -24.86239 -23.33068 -22.97128 -22.14759 -21.09053 -20.69803 -19.99525 -17.84107 -16.78764 -16.53972 -16.15270 -15.51509 -15.18254 -14.87936 -14.80225 -14.48389 -14.10167 -13.84030 -13.76410 -13.65796 -13.51916 -13.22456 -12.91506 -12.66163 -12.53551 -12.40104 -12.18126 -12.04209 -11.98634 -11.42259 -11.25043 -11.23498 -11.13238 -10.83111 -10.76658 -10.49660 -10.43895 -10.34840 -9.98320 -9.84485 -9.71254 -9.15270 -8.84812 -8.50551 -8.37523 -7.45706 -6.62025 -5.80382 -3.33059 0.97386 1.17824 1.95164 2.08930 3.23156 3.32509 3.42473 3.45963 3.83831 4.36140 4.50296 4.52429 4.53220 4.72816 4.77444 4.87197 5.15376 5.22302 5.25683 5.26702 5.29561 5.38911 5.46288 5.47711 5.48744 5.65337 5.81872 5.83006 5.85159 5.97940 6.08257 6.09932 6.15052 6.26958 6.32532 6.37534 6.42031 6.44934 6.51221 6.67000 6.74673 6.78592 6.88237 6.93656 7.07914 7.19714 7.35182 7.45284 7.72379 7.81829 7.86975 8.49482 9.17178 9.81243 10.37767 11.19246 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.017247 B = 0.002553 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.066547 B =10963.817299 C =11665.147750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.142 3.858 3 N -0.577 5.577 4 C -0.246 4.246 5 H 0.060 0.940 6 C 0.007 3.993 7 N -0.886 5.886 8 Si 0.889 3.111 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.289 1.289 12 C 0.172 3.828 13 C -0.099 4.099 14 C -0.083 4.083 15 C -0.156 4.156 16 C 0.101 3.899 17 O -0.316 6.316 18 C 0.103 3.897 19 C -0.095 4.095 20 C -0.092 4.092 21 C -0.125 4.125 22 C -0.082 4.082 23 C -0.115 4.115 24 C -0.125 4.125 25 C -0.092 4.092 26 C -0.210 4.210 27 C -0.062 4.062 28 H 0.047 0.953 29 H 0.034 0.966 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.034 0.966 33 H 0.254 0.746 34 H 0.108 0.892 35 H 0.032 0.968 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.116 0.884 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.991 7.938 11.835 22.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.016 3.984 3 N -0.296 5.296 4 C -0.376 4.376 5 H 0.078 0.922 6 C -0.192 4.192 7 N -0.529 5.529 8 Si 0.719 3.281 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.046 3.954 13 C -0.102 4.102 14 C -0.102 4.102 15 C -0.175 4.175 16 C 0.056 3.944 17 O -0.231 6.231 18 C 0.028 3.972 19 C -0.095 4.095 20 C -0.110 4.110 21 C -0.143 4.143 22 C -0.082 4.082 23 C -0.172 4.172 24 C -0.143 4.143 25 C -0.110 4.110 26 C -0.229 4.229 27 C -0.081 4.081 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.125 0.875 35 H 0.051 0.949 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.134 0.866 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.948 7.926 11.923 22.186 hybrid contribution -0.096 0.976 -0.875 1.314 sum -17.044 8.902 11.048 22.177 Atomic orbital electron populations 1.22391 0.99983 0.98882 1.01696 1.20846 0.91812 0.86988 0.98733 1.43781 1.75584 1.08118 1.02156 1.19056 1.07196 1.18383 0.92994 0.92193 1.25035 0.94259 1.01535 0.98376 1.69985 1.04658 1.35852 1.42416 0.86428 0.77775 0.82598 0.81317 1.20100 1.21364 1.21644 1.20089 0.92809 0.96896 0.85653 1.21175 1.00143 0.93837 0.95059 1.20834 0.93593 0.98986 0.96811 1.20251 1.00014 0.92407 1.04800 1.18825 0.87304 0.92616 0.95608 1.86066 1.43289 1.25525 1.68196 1.21463 0.95052 0.82016 0.98716 1.19563 0.94139 1.00024 0.95745 1.21088 0.98811 0.97071 0.94041 1.21015 0.92016 1.01295 1.00003 1.19985 0.95323 0.98052 0.94883 1.20807 0.94878 1.00972 1.00518 1.21026 0.98407 0.99534 0.95328 1.21107 0.91789 0.97991 1.00079 1.21161 0.98475 1.00385 1.02876 1.20911 0.95527 0.94744 0.96878 0.93408 0.94713 0.93103 0.93837 0.94714 0.93560 0.87471 0.94941 0.86378 0.86478 0.91370 0.91425 0.85749 0.85898 0.91064 0.91509 0.91500 0.85879 0.85707 0.86645 0.86039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.21 10.20 37.16 0.38 -2.83 16 2 C 0.14 3.00 6.44 -4.04 -0.03 2.98 16 3 N -0.58 -14.06 2.44 -174.61 -0.43 -14.49 16 4 C -0.25 -6.59 9.48 -15.06 -0.14 -6.73 16 5 H 0.06 1.64 7.93 -52.48 -0.42 1.22 16 6 C 0.01 0.20 4.95 -17.43 -0.09 0.11 16 7 N -0.89 -24.71 11.31 55.49 0.63 -24.08 16 8 Si 0.89 21.16 29.61 -169.99 -5.03 16.13 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 C 0.17 3.95 5.46 -5.19 -0.03 3.93 16 13 C -0.10 -2.04 5.44 -104.60 -0.57 -2.61 16 14 C -0.08 -1.52 7.86 -39.61 -0.31 -1.83 16 15 C -0.16 -2.68 9.99 -39.43 -0.39 -3.08 16 16 C 0.10 1.75 6.69 -39.22 -0.26 1.48 16 17 O -0.32 -5.01 10.12 -19.44 -0.20 -5.20 16 18 C 0.10 1.31 4.86 36.01 0.18 1.48 16 19 C -0.09 -1.11 5.51 -104.62 -0.58 -1.68 16 20 C -0.09 -0.97 9.70 -39.58 -0.38 -1.36 16 21 C -0.13 -1.16 9.70 -39.59 -0.38 -1.55 16 22 C -0.08 -0.74 5.88 -104.63 -0.62 -1.35 16 23 C -0.12 -0.71 10.01 36.00 0.36 -0.35 16 24 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 25 C -0.09 -0.99 9.70 -39.58 -0.38 -1.37 16 26 C -0.21 -3.73 9.04 -39.43 -0.36 -4.09 16 27 C -0.06 -1.25 9.69 -39.60 -0.38 -1.64 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.96 6.13 -51.93 -0.32 0.64 16 31 H 0.04 0.94 8.09 -51.93 -0.42 0.52 16 32 H 0.03 0.68 7.83 -51.93 -0.41 0.27 16 33 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 34 H 0.11 2.78 5.26 -51.93 -0.27 2.51 16 35 H 0.03 0.71 7.80 -51.93 -0.40 0.30 16 36 H 0.12 1.96 8.02 -52.49 -0.42 1.54 16 37 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 38 H 0.07 0.83 7.59 -51.93 -0.39 0.44 16 39 H 0.07 0.79 7.62 -51.93 -0.40 0.40 16 40 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 44 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 45 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 46 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 47 H 0.12 1.78 6.30 -52.49 -0.33 1.45 16 48 H 0.12 2.63 8.06 -52.49 -0.42 2.20 16 LS Contribution 394.94 15.07 5.95 5.95 Total: -1.00 -29.45 394.94 -11.01 -40.46 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.56 Total: 3.29 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -4.37 Total: -22.04 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.20 Total: -38.58 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.20 Total: -5.20 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.45 -11.01 -40.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000511519554.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.521 kcal (2) G-P(sol) polarization free energy of solvation -29.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds