Wall clock time and date at job start Tue Mar 31 2020 13:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.46931 * 2 1 4 4 C 1.36930 * 120.00040 * 275.65338 * 3 2 1 5 5 H 1.08003 * 120.00230 * 34.00629 * 4 3 2 6 6 C 1.38817 * 120.00042 * 214.00936 * 4 3 2 7 7 N 1.31615 * 119.99771 * 22.91454 * 6 4 3 8 8 Si 1.86800 * 119.99849 * 202.91527 * 6 4 3 9 9 H 1.48500 * 109.47263 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46837 * 119.99760 * 8 6 4 11 11 H 1.48496 * 109.47150 * 239.99674 * 8 6 4 12 12 C 1.46503 * 119.99618 * 95.65382 * 3 2 1 13 13 C 1.50696 * 109.47404 * 269.99632 * 12 3 2 14 14 C 1.38261 * 119.94420 * 89.99823 * 13 12 3 15 15 C 1.38143 * 120.05511 * 179.97438 * 14 13 12 16 16 C 1.38730 * 119.94658 * 0.02562 * 15 14 13 17 17 O 1.35903 * 120.05475 * 179.97438 * 16 15 14 18 18 C 1.42901 * 116.99602 * 179.97438 * 17 16 15 19 19 C 1.50704 * 109.46998 * 180.02562 * 18 17 16 20 20 C 1.38236 * 120.00193 * 89.99626 * 19 18 17 21 21 C 1.38235 * 119.99898 * 180.27772 * 20 19 18 22 22 C 1.38230 * 119.99985 * 359.49265 * 21 20 19 23 23 C 1.50698 * 119.99974 * 180.23459 * 22 21 20 24 24 C 1.38233 * 120.00038 * 0.51382 * 22 21 20 25 25 C 1.38236 * 120.00243 * 359.73870 * 24 22 21 26 26 C 1.38732 * 119.88886 * 0.27025 * 16 15 14 27 27 C 1.38148 * 119.93835 * 359.47224 * 26 16 15 28 28 H 1.09000 * 109.46964 * 60.00442 * 1 2 3 29 29 H 1.08996 * 109.47213 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47333 * 300.00230 * 1 2 3 31 31 H 1.08998 * 109.47333 * 239.99770 * 2 1 3 32 32 H 1.09000 * 109.46964 * 119.99558 * 2 1 3 33 33 H 0.97004 * 119.99592 * 180.02562 * 7 6 4 34 34 H 1.09006 * 109.46760 * 149.99993 * 12 3 2 35 35 H 1.08998 * 109.47674 * 30.00066 * 12 3 2 36 36 H 1.08000 * 119.97392 * 359.97438 * 14 13 12 37 37 H 1.08005 * 120.02484 * 179.97438 * 15 14 13 38 38 H 1.08997 * 109.47448 * 60.00445 * 18 17 16 39 39 H 1.09002 * 109.47435 * 299.99870 * 18 17 16 40 40 H 1.08002 * 119.99655 * 0.02562 * 20 19 18 41 41 H 1.07997 * 119.99715 * 179.72714 * 21 20 19 42 42 H 1.08998 * 109.47399 * 270.27705 * 23 22 21 43 43 H 1.09000 * 109.47033 * 30.27618 * 23 22 21 44 44 H 1.09001 * 109.47139 * 150.27772 * 23 22 21 45 45 H 1.08002 * 120.00069 * 179.72628 * 24 22 21 46 46 H 1.07999 * 120.00331 * 179.97438 * 25 24 22 47 47 H 1.07994 * 120.03027 * 179.72308 * 26 16 15 48 48 H 1.08002 * 119.96855 * 180.23247 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1364 2.0657 -1.1801 5 1 1.4323 1.8888 -1.9798 6 6 3.1610 2.9869 -1.3486 7 7 4.2516 2.8993 -0.6171 8 14 2.9919 4.3509 -2.6137 9 1 1.6803 4.2301 -3.2996 10 1 3.0752 5.6689 -1.9345 11 1 4.0854 4.2385 -3.6120 12 6 2.3803 2.0301 1.2626 13 6 1.1714 2.7240 1.8355 14 6 0.3275 2.0438 2.6939 15 6 -0.7810 2.6778 3.2209 16 6 -1.0474 3.9979 2.8877 17 8 -2.1376 4.6235 3.4044 18 6 -2.3492 5.9829 3.0180 19 6 -3.5953 6.5065 3.6847 20 6 -3.5132 7.1136 4.9239 21 6 -4.6569 7.5887 5.5379 22 6 -5.8813 7.4661 4.9081 23 6 -7.1274 7.9888 5.5751 24 6 -5.9634 6.8589 3.6689 25 6 -4.8204 6.3791 3.0572 26 6 -0.2026 4.6763 2.0213 27 6 0.9076 4.0394 1.5013 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.9675 3.5433 -0.7347 34 1 3.1677 2.7620 1.0823 35 1 2.7366 1.2794 1.9680 36 1 0.5351 1.0160 2.9527 37 1 -1.4401 2.1459 3.8910 38 1 -2.4648 6.0393 1.9356 39 1 -1.4936 6.5850 3.3239 40 1 -2.5559 7.2130 5.4141 41 1 -4.5933 8.0590 6.5080 42 1 -7.5661 7.2041 6.1914 43 1 -6.8728 8.8434 6.2020 44 1 -7.8447 8.2971 4.8144 45 1 -6.9206 6.7592 3.1788 46 1 -4.8846 5.9044 2.0892 47 1 -0.4103 5.7025 1.7569 48 1 1.5677 4.5683 0.8297 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000511519554.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:57 Heat of formation + Delta-G solvation = 12.533971 kcal Electronic energy + Delta-G solvation = -26502.752463 eV Core-core repulsion = 22908.606167 eV Total energy + Delta-G solvation = -3594.146295 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.19868 -40.24028 -38.84127 -37.15382 -34.37258 -33.82799 -32.18930 -31.89873 -31.79599 -30.27934 -29.42147 -27.11427 -25.88462 -25.01779 -23.69961 -23.45727 -22.52312 -21.81335 -21.53553 -19.14197 -18.62514 -17.58327 -17.09740 -16.99719 -16.39124 -16.13062 -15.90956 -15.77551 -15.60409 -15.49487 -15.06116 -14.61768 -14.41160 -14.35694 -14.34086 -14.08630 -13.79809 -13.50933 -13.32626 -13.15989 -13.05831 -12.94826 -12.85618 -12.64029 -12.37945 -12.24638 -12.06454 -11.98964 -11.97316 -11.81378 -11.75819 -11.53095 -11.37676 -10.51392 -9.89151 -9.81380 -9.58661 -8.90904 -8.58373 -7.81541 -5.38587 0.19978 0.44070 0.51015 0.62027 1.40995 1.45684 1.54789 2.24778 2.50116 2.91036 2.93567 3.25303 3.69240 3.78150 3.89840 3.96399 4.00500 4.06774 4.08931 4.12795 4.27460 4.35842 4.45527 4.52139 4.56848 4.57072 4.61565 4.78529 4.81505 4.83538 4.85032 4.87088 4.90310 4.94478 5.10079 5.13006 5.22930 5.24871 5.30821 5.39696 5.44731 5.55408 5.59086 5.59382 5.64485 5.64600 5.76888 5.93781 6.03488 6.04186 6.47178 6.53457 7.17651 7.88919 8.39629 9.14157 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.017247 B = 0.002553 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.066547 B =10963.817299 C =11665.147750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 N -0.592 5.592 4 C -0.252 4.252 5 H 0.049 0.951 6 C -0.033 4.033 7 N -0.913 5.913 8 Si 0.943 3.057 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.290 1.290 12 C 0.177 3.823 13 C -0.117 4.117 14 C -0.077 4.077 15 C -0.154 4.154 16 C 0.108 3.892 17 O -0.321 6.321 18 C 0.099 3.901 19 C -0.116 4.116 20 C -0.103 4.103 21 C -0.131 4.131 22 C -0.084 4.084 23 C -0.114 4.114 24 C -0.132 4.132 25 C -0.105 4.105 26 C -0.209 4.209 27 C -0.080 4.080 28 H 0.028 0.972 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.032 0.968 32 H 0.051 0.949 33 H 0.252 0.748 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.136 0.864 37 H 0.142 0.858 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.131 0.869 41 H 0.144 0.856 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.143 0.857 46 H 0.127 0.873 47 H 0.135 0.865 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.701 8.375 13.292 25.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.012 3.988 3 N -0.312 5.312 4 C -0.383 4.383 5 H 0.067 0.933 6 C -0.230 4.230 7 N -0.558 5.558 8 Si 0.771 3.229 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.217 1.217 12 C 0.051 3.949 13 C -0.120 4.120 14 C -0.096 4.096 15 C -0.173 4.173 16 C 0.063 3.937 17 O -0.235 6.235 18 C 0.025 3.975 19 C -0.116 4.116 20 C -0.121 4.121 21 C -0.149 4.149 22 C -0.084 4.084 23 C -0.171 4.171 24 C -0.150 4.150 25 C -0.124 4.124 26 C -0.228 4.228 27 C -0.099 4.099 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.154 0.846 37 H 0.160 0.840 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.149 0.851 41 H 0.162 0.838 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.160 0.840 46 H 0.145 0.855 47 H 0.153 0.847 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.684 8.361 13.390 25.232 hybrid contribution 0.627 0.860 -1.231 1.627 sum -19.057 9.221 12.159 24.414 Atomic orbital electron populations 1.22211 0.97921 1.00632 1.00714 1.20981 0.93334 0.85482 0.99005 1.43980 1.75947 1.09410 1.01901 1.19135 1.06614 1.18842 0.93691 0.93337 1.25579 0.94079 1.03164 1.00187 1.70091 1.05228 1.36486 1.43975 0.85597 0.77518 0.80368 0.79391 1.19808 1.21233 1.21737 1.19881 0.93223 0.96326 0.85438 1.20908 1.00031 0.94174 0.96853 1.20920 0.93204 0.99616 0.95829 1.20520 0.99754 0.92479 1.04517 1.18936 0.87278 0.92816 0.94700 1.86078 1.42330 1.27155 1.67983 1.21651 0.96185 0.80550 0.99153 1.19575 0.93916 1.01461 0.96640 1.21278 0.99781 0.97205 0.93866 1.21325 0.91747 1.00965 1.00847 1.20385 0.96358 0.97043 0.94662 1.20867 0.93758 1.01533 1.00903 1.21315 0.98787 0.99177 0.95698 1.21273 0.92124 0.98502 1.00455 1.21262 0.97583 1.01295 1.02621 1.20805 0.96469 0.95048 0.97619 0.95325 0.91525 0.93038 0.94932 0.93024 0.93873 0.90671 0.94360 0.84644 0.84042 0.91090 0.90613 0.85109 0.83784 0.90250 0.90380 0.90493 0.83969 0.85477 0.84729 0.88456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.64 10.20 71.98 0.73 -4.90 16 2 C 0.14 5.73 6.44 86.38 0.56 6.28 16 3 N -0.59 -29.28 2.44 -706.33 -1.73 -31.01 16 4 C -0.25 -13.81 9.48 84.04 0.80 -13.02 16 5 H 0.05 2.72 7.93 -2.91 -0.02 2.70 16 6 C -0.03 -1.82 4.95 84.86 0.42 -1.40 16 7 N -0.91 -52.56 11.31 21.65 0.24 -52.31 16 8 Si 0.94 44.57 29.61 68.60 2.03 46.60 16 9 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 10 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 12 C 0.18 8.34 5.46 85.63 0.47 8.81 16 13 C -0.12 -4.84 5.44 -19.85 -0.11 -4.95 16 14 C -0.08 -2.69 7.86 22.25 0.17 -2.51 16 15 C -0.15 -4.96 9.99 22.36 0.22 -4.74 16 16 C 0.11 3.56 6.69 22.51 0.15 3.71 16 17 O -0.32 -9.62 10.12 -92.46 -0.94 -10.56 16 18 C 0.10 2.41 4.86 71.24 0.35 2.76 16 19 C -0.12 -2.58 5.51 -19.86 -0.11 -2.69 16 20 C -0.10 -2.03 9.70 22.27 0.22 -1.82 16 21 C -0.13 -2.15 9.70 22.27 0.22 -1.93 16 22 C -0.08 -1.31 5.88 -19.87 -0.12 -1.42 16 23 C -0.11 -1.06 10.01 71.24 0.71 -0.35 16 24 C -0.13 -2.23 9.70 22.27 0.22 -2.02 16 25 C -0.11 -2.15 9.70 22.27 0.22 -1.94 16 26 C -0.21 -7.30 9.04 22.37 0.20 -7.10 16 27 C -0.08 -3.32 9.69 22.26 0.22 -3.11 16 28 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.05 1.85 6.13 -2.39 -0.01 1.83 16 31 H 0.03 1.40 8.09 -2.39 -0.02 1.38 16 32 H 0.05 1.95 7.83 -2.39 -0.02 1.94 16 33 H 0.25 14.00 8.31 -92.71 -0.77 13.22 16 34 H 0.08 4.07 5.26 -2.38 -0.01 4.06 16 35 H 0.04 1.69 7.80 -2.39 -0.02 1.67 16 36 H 0.14 4.19 8.02 -2.91 -0.02 4.16 16 37 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 38 H 0.07 1.67 7.59 -2.39 -0.02 1.65 16 39 H 0.08 1.70 7.62 -2.39 -0.02 1.68 16 40 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 41 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 42 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.08 0.56 8.09 -2.39 -0.02 0.54 16 44 H 0.08 0.57 8.09 -2.39 -0.02 0.55 16 45 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 46 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 47 H 0.13 4.05 6.30 -2.91 -0.02 4.03 16 48 H 0.10 4.43 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -63.88 394.94 6.07 -57.80 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.93 Total: 21.79 kcal Atomic # 6 Polarization: -37.85 SS G_CDS: 5.53 Total: -32.32 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -1.48 Total: -83.32 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -0.94 Total: -10.56 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -63.88 6.07 -57.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000511519554.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.338 kcal (2) G-P(sol) polarization free energy of solvation -63.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds