Wall clock time and date at job start Tue Mar 31 2020 14:44:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42894 * 1
3 3 C 1.35802 * 117.00141 * 2 1
4 4 C 1.36666 * 120.22949 * 0.04013 * 3 2 1
5 5 C 1.39189 * 120.92045 * 180.02562 * 4 3 2
6 6 C 1.36172 * 121.06127 * 359.93989 * 5 4 3
7 7 C 1.50704 * 120.11567 * 180.02562 * 6 5 4
8 8 N 1.46904 * 109.47006 * 259.97938 * 7 6 5
9 9 C 1.46853 * 111.00055 * 45.79050 * 8 7 6
10 10 C 1.53036 * 109.51949 * 185.83619 * 9 8 7
11 11 C 1.53116 * 109.28294 * 300.82111 * 10 9 8
12 12 C 1.50700 * 109.57752 * 177.59154 * 11 10 9
13 13 H 1.07997 * 119.99926 * 240.28700 * 12 11 10
14 14 C 1.37878 * 119.99871 * 60.28196 * 12 11 10
15 15 N 1.31514 * 120.00144 * 0.02562 * 14 12 11
16 16 Si 1.86797 * 120.00088 * 180.02562 * 14 12 11
17 17 H 1.48499 * 109.47159 * 90.00141 * 16 14 12
18 18 H 1.48494 * 109.47248 * 210.00450 * 16 14 12
19 19 H 1.48498 * 109.46878 * 330.00034 * 16 14 12
20 20 C 1.53123 * 109.15921 * 57.65227 * 11 10 9
21 21 C 1.46850 * 110.99679 * 169.99615 * 8 7 6
22 22 C 1.40518 * 119.77293 * 0.02562 * 6 5 4
23 23 C 1.40550 * 121.27664 * 180.02562 * 22 6 5
24 24 C 1.36105 * 119.65155 * 179.97438 * 23 22 6
25 25 C 1.39364 * 120.97920 * 359.97438 * 24 23 22
26 26 C 1.36137 * 120.97242 * 359.72208 * 25 24 23
27 27 C 1.40419 * 119.66622 * 0.55251 * 26 25 24
28 28 H 1.08999 * 109.47481 * 180.02562 * 1 2 3
29 29 H 1.09008 * 109.47116 * 299.99993 * 1 2 3
30 30 H 1.08998 * 109.47337 * 60.00006 * 1 2 3
31 31 H 1.07999 * 119.53752 * 359.97438 * 4 3 2
32 32 H 1.08000 * 119.46667 * 179.97438 * 5 4 3
33 33 H 1.09002 * 109.46752 * 19.97636 * 7 6 5
34 34 H 1.08997 * 109.47332 * 139.98148 * 7 6 5
35 35 H 1.08997 * 109.45805 * 305.84965 * 9 8 7
36 36 H 1.08997 * 109.46122 * 65.82298 * 9 8 7
37 37 H 1.09001 * 109.50285 * 180.87728 * 10 9 8
38 38 H 1.09006 * 109.53185 * 60.78154 * 10 9 8
39 39 H 1.09004 * 109.52012 * 297.75085 * 11 10 9
40 40 H 0.97001 * 120.00471 * 179.97438 * 15 14 12
41 41 H 1.09004 * 109.49881 * 182.40830 * 20 11 10
42 42 H 1.09004 * 109.53156 * 62.31219 * 20 11 10
43 43 H 1.08997 * 109.46652 * 294.17995 * 21 8 7
44 44 H 1.08998 * 109.45904 * 54.15727 * 21 8 7
45 45 H 1.08002 * 120.17572 * 359.94750 * 23 22 6
46 46 H 1.07995 * 119.51245 * 179.97438 * 24 23 22
47 47 H 1.07990 * 119.51273 * 180.02562 * 25 24 23
48 48 H 1.08001 * 120.16605 * 180.02562 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0455 1.2100 0.0000
4 6 1.3058 2.3592 0.0008
5 6 1.9227 3.6069 0.0003
6 6 3.2798 3.7196 0.0002
7 6 3.9253 5.0814 0.0002
8 7 4.3527 5.4207 -1.3637
9 6 3.2954 5.1187 -2.3370
10 6 3.8250 5.3464 -3.7546
11 6 4.2758 6.8027 -3.8981
12 6 4.8533 7.0195 -5.2730
13 1 5.8784 7.3408 -5.3836
14 6 4.0729 6.8075 -6.3898
15 7 2.8245 6.4166 -6.2551
16 14 4.7890 7.0754 -8.0941
17 1 5.3933 5.8096 -8.5818
18 1 3.7107 7.4992 -9.0230
19 1 5.8321 8.1305 -8.0325
20 6 5.3421 7.1051 -2.8416
21 6 4.7685 6.8264 -1.4505
22 6 4.0761 2.5619 0.0000
23 6 5.4794 2.6415 0.0004
24 6 6.2186 1.4988 0.0008
25 6 5.6050 0.2475 0.0013
26 6 4.2486 0.1324 0.0072
27 6 3.4529 1.2893 0.0009
28 1 -0.3634 -1.0276 0.0005
29 1 -0.3634 0.5139 0.8900
30 1 -0.3634 0.5138 -0.8900
31 1 0.2275 2.2983 0.0011
32 1 1.3153 4.4999 0.0006
33 1 3.2082 5.8234 0.3514
34 1 4.7922 5.0726 0.6609
35 1 2.9870 4.0790 -2.2272
36 1 2.4409 5.7716 -2.1593
37 1 3.0353 5.1372 -4.4762
38 1 4.6709 4.6839 -3.9385
39 1 3.4217 7.4643 -3.7533
40 1 2.2753 6.2678 -7.0407
41 1 5.6362 8.1524 -2.9109
42 1 6.2124 6.4708 -3.0103
43 1 3.9071 7.4714 -1.2769
44 1 5.5301 7.0270 -0.6970
45 1 5.9685 3.6045 0.0000
46 1 7.2967 1.5625 0.0007
47 1 6.2146 -0.6439 0.0021
48 1 3.7867 -0.8439 0.0079
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000542852718.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:44:55
Heat of formation + Delta-G solvation = 4.491068 kcal
Electronic energy + Delta-G solvation = -27860.154672 eV
Core-core repulsion = 24265.659610 eV
Total energy + Delta-G solvation = -3594.495062 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 325.178 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-40.87632 -38.84998 -38.05571 -36.10055 -33.99560 -32.38422 -31.00866 -30.40408
-29.73279 -28.98600 -27.67079 -26.19544 -24.21334 -23.14013 -22.94648 -22.01455
-21.51558 -20.13376 -18.55839 -18.07179 -17.43491 -16.85332 -16.34552 -15.90609
-15.28227 -15.11959 -15.06373 -14.42347 -14.41057 -14.06208 -13.55411 -13.44033
-13.30949 -13.15354 -12.92809 -12.76064 -12.39700 -12.32029 -11.90266 -11.74119
-11.70038 -11.60699 -11.46588 -10.92052 -10.77901 -10.70885 -10.68569 -10.63797
-10.38117 -10.15398 -9.91595 -9.37947 -9.35740 -8.90394 -8.65362 -8.57415
-8.24438 -7.75326 -7.36922 -5.92689 -3.97800 0.67974 1.06507 2.14793
3.06128 3.09302 3.34326 3.40796 3.43962 4.13258 4.48842 4.61996
4.68435 4.77924 4.85338 4.93007 4.98241 5.06070 5.18872 5.22661
5.29918 5.37531 5.42847 5.50522 5.58747 5.62801 5.78061 5.79606
5.94586 5.99238 6.13758 6.16809 6.18593 6.29125 6.30826 6.38265
6.48776 6.55550 6.67112 6.68788 6.70807 6.83668 6.90776 7.04947
7.12975 7.22656 7.31007 7.50903 7.67200 7.74828 7.88589 8.10893
8.22243 8.53672 9.05933 9.66340 11.13444
Molecular weight = 325.18amu
Principal moments of inertia in cm(-1)
A = 0.013367 B = 0.003411 C = 0.003237
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2094.243815 B = 8207.679896 C = 8647.086030
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.315 6.315
3 C 0.136 3.864
4 C -0.215 4.215
5 C -0.076 4.076
6 C -0.092 4.092
7 C 0.094 3.906
8 N -0.527 5.527
9 C 0.058 3.942
10 C -0.102 4.102
11 C 0.048 3.952
12 C -0.509 4.509
13 H 0.054 0.946
14 C 0.061 3.939
15 N -0.892 5.892
16 Si 0.888 3.112
17 H -0.281 1.281
18 H -0.288 1.288
19 H -0.275 1.275
20 C -0.105 4.105
21 C 0.060 3.940
22 C -0.003 4.003
23 C -0.092 4.092
24 C -0.114 4.114
25 C -0.127 4.127
26 C -0.093 4.093
27 C -0.068 4.068
28 H 0.099 0.901
29 H 0.055 0.945
30 H 0.057 0.943
31 H 0.126 0.874
32 H 0.121 0.879
33 H 0.036 0.964
34 H 0.078 0.922
35 H 0.060 0.940
36 H 0.019 0.981
37 H 0.090 0.910
38 H 0.041 0.959
39 H 0.019 0.981
40 H 0.258 0.742
41 H 0.049 0.951
42 H 0.056 0.944
43 H 0.024 0.976
44 H 0.057 0.943
45 H 0.137 0.863
46 H 0.121 0.879
47 H 0.120 0.880
48 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.886 -11.319 16.754 20.307
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.228 6.228
3 C 0.090 3.910
4 C -0.234 4.234
5 C -0.095 4.095
6 C -0.092 4.092
7 C -0.033 4.033
8 N -0.252 5.252
9 C -0.069 4.069
10 C -0.141 4.141
11 C 0.030 3.970
12 C -0.548 4.548
13 H 0.072 0.928
14 C -0.140 4.140
15 N -0.531 5.531
16 Si 0.717 3.283
17 H -0.207 1.207
18 H -0.214 1.214
19 H -0.200 1.200
20 C -0.143 4.143
21 C -0.068 4.068
22 C -0.003 4.003
23 C -0.110 4.110
24 C -0.132 4.132
25 C -0.145 4.145
26 C -0.111 4.111
27 C -0.069 4.069
28 H 0.117 0.883
29 H 0.073 0.927
30 H 0.076 0.924
31 H 0.143 0.857
32 H 0.139 0.861
33 H 0.054 0.946
34 H 0.096 0.904
35 H 0.078 0.922
36 H 0.037 0.963
37 H 0.108 0.892
38 H 0.060 0.940
39 H 0.037 0.963
40 H 0.068 0.932
41 H 0.067 0.933
42 H 0.075 0.925
43 H 0.042 0.958
44 H 0.076 0.924
45 H 0.155 0.845
46 H 0.139 0.861
47 H 0.138 0.862
48 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges -1.557 -11.829 16.523 20.380
hybrid contribution -0.806 0.741 -0.895 1.414
sum -2.363 -11.089 15.627 19.307
Atomic orbital electron populations
1.23063 0.78325 1.03816 1.01575 1.85981 1.21348 1.27001 1.88440
1.18631 0.91289 0.84334 0.96706 1.20751 0.99924 0.92162 1.10552
1.20453 0.94116 0.96813 0.98110 1.19504 0.93109 0.94411 1.02194
1.21020 0.98265 0.91603 0.92462 1.62183 1.39235 1.21242 1.02563
1.22307 0.91334 0.98962 0.94331 1.21639 1.01270 0.99218 0.91947
1.18679 0.93112 0.92773 0.92457 1.21216 0.97894 1.44829 0.90840
0.92803 1.24960 0.94829 0.95247 0.98940 1.69882 1.06862 1.47133
1.29265 0.86653 0.78714 0.78433 0.84542 1.20744 1.21371 1.19999
1.21667 1.00194 0.99423 0.93029 1.22133 0.98203 0.87177 0.99252
1.17665 0.93668 0.90949 0.98050 1.21122 0.92211 0.99309 0.98319
1.20891 1.00077 0.92448 0.99814 1.20801 0.94667 0.97631 1.01412
1.20855 0.93685 0.97453 0.99118 1.17415 0.89888 0.93924 1.05646
0.88292 0.92657 0.92392 0.85650 0.86072 0.94578 0.90422 0.92207
0.96297 0.89173 0.93976 0.96272 0.93176 0.93251 0.92486 0.95818
0.92445 0.84517 0.86070 0.86243 0.85544
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.22 9.81 101.05 0.99 1.21 16
2 O -0.31 -3.82 9.72 -19.12 -0.19 -4.00 16
3 C 0.14 1.87 6.67 -39.12 -0.26 1.61 16
4 C -0.21 -2.79 8.99 -39.80 -0.36 -3.15 16
5 C -0.08 -1.05 8.51 -39.97 -0.34 -1.40 16
6 C -0.09 -1.35 3.71 -104.50 -0.39 -1.74 16
7 C 0.09 1.37 4.66 -4.97 -0.02 1.35 16
8 N -0.53 -9.35 4.80 -236.11 -1.13 -10.49 16
9 C 0.06 1.17 4.80 -3.83 -0.02 1.15 16
10 C -0.10 -2.49 5.12 -26.65 -0.14 -2.63 16
11 C 0.05 1.22 2.16 -91.65 -0.20 1.02 16
12 C -0.51 -14.19 8.57 -34.44 -0.29 -14.49 16
13 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16
14 C 0.06 1.71 5.31 -17.82 -0.09 1.61 16
15 N -0.89 -25.81 11.37 55.43 0.63 -25.18 16
16 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16
17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
20 C -0.11 -2.22 5.32 -26.65 -0.14 -2.36 16
21 C 0.06 1.07 5.42 -3.83 -0.02 1.05 16
22 C 0.00 -0.04 5.74 -106.84 -0.61 -0.66 16
23 C -0.09 -1.27 9.29 -39.48 -0.37 -1.64 16
24 C -0.11 -1.40 9.95 -39.93 -0.40 -1.80 16
25 C -0.13 -1.50 9.95 -39.92 -0.40 -1.90 16
26 C -0.09 -1.21 9.56 -39.52 -0.38 -1.59 16
27 C -0.07 -1.00 5.75 -106.72 -0.61 -1.61 16
28 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16
29 H 0.05 0.39 7.65 -51.92 -0.40 -0.01 16
30 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16
31 H 0.13 1.32 6.21 -52.49 -0.33 0.99 16
32 H 0.12 1.54 8.00 -52.49 -0.42 1.12 16
33 H 0.04 0.51 7.91 -51.93 -0.41 0.10 16
34 H 0.08 1.02 6.99 -51.93 -0.36 0.66 16
35 H 0.06 1.20 6.02 -51.93 -0.31 0.89 16
36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16
37 H 0.09 2.45 6.18 -51.93 -0.32 2.13 16
38 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16
39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16
41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16
42 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16
43 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16
44 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16
45 H 0.14 1.84 6.60 -52.49 -0.35 1.49 16
46 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16
47 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16
48 H 0.13 1.46 7.62 -52.49 -0.40 1.06 16
LS Contribution 374.16 15.07 5.64 5.64
Total: -1.00 -30.43 374.16 -11.58 -42.01
By element:
Atomic # 1 Polarization: 8.85 SS G_CDS: -7.46 Total: 1.39 kcal
Atomic # 6 Polarization: -21.90 SS G_CDS: -4.05 Total: -25.95 kcal
Atomic # 7 Polarization: -35.16 SS G_CDS: -0.50 Total: -35.67 kcal
Atomic # 8 Polarization: -3.82 SS G_CDS: -0.19 Total: -4.00 kcal
Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -30.43 -11.58 -42.01 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000542852718.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.499 kcal
(2) G-P(sol) polarization free energy of solvation -30.425 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.074 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.583 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.008 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.491 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds