Wall clock time and date at job start Tue Mar 31 2020 14:44:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42894 * 1
3 3 C 1.35802 * 117.00141 * 2 1
4 4 C 1.36666 * 120.22949 * 0.04013 * 3 2 1
5 5 C 1.39189 * 120.92045 * 180.02562 * 4 3 2
6 6 C 1.36172 * 121.06127 * 359.93989 * 5 4 3
7 7 C 1.50704 * 120.11567 * 180.02562 * 6 5 4
8 8 N 1.46904 * 109.47006 * 259.97938 * 7 6 5
9 9 C 1.46853 * 111.00055 * 45.79050 * 8 7 6
10 10 C 1.53036 * 109.51949 * 185.83619 * 9 8 7
11 11 C 1.53116 * 109.28294 * 300.82111 * 10 9 8
12 12 C 1.50700 * 109.57752 * 177.59154 * 11 10 9
13 13 H 1.07997 * 119.99926 * 240.28700 * 12 11 10
14 14 C 1.37878 * 119.99871 * 60.28196 * 12 11 10
15 15 N 1.31514 * 120.00144 * 0.02562 * 14 12 11
16 16 Si 1.86797 * 120.00088 * 180.02562 * 14 12 11
17 17 H 1.48499 * 109.47159 * 90.00141 * 16 14 12
18 18 H 1.48494 * 109.47248 * 210.00450 * 16 14 12
19 19 H 1.48498 * 109.46878 * 330.00034 * 16 14 12
20 20 C 1.53123 * 109.15921 * 57.65227 * 11 10 9
21 21 C 1.46850 * 110.99679 * 169.99615 * 8 7 6
22 22 C 1.40518 * 119.77293 * 0.02562 * 6 5 4
23 23 C 1.40550 * 121.27664 * 180.02562 * 22 6 5
24 24 C 1.36105 * 119.65155 * 179.97438 * 23 22 6
25 25 C 1.39364 * 120.97920 * 359.97438 * 24 23 22
26 26 C 1.36137 * 120.97242 * 359.72208 * 25 24 23
27 27 C 1.40419 * 119.66622 * 0.55251 * 26 25 24
28 28 H 1.08999 * 109.47481 * 180.02562 * 1 2 3
29 29 H 1.09008 * 109.47116 * 299.99993 * 1 2 3
30 30 H 1.08998 * 109.47337 * 60.00006 * 1 2 3
31 31 H 1.07999 * 119.53752 * 359.97438 * 4 3 2
32 32 H 1.08000 * 119.46667 * 179.97438 * 5 4 3
33 33 H 1.09002 * 109.46752 * 19.97636 * 7 6 5
34 34 H 1.08997 * 109.47332 * 139.98148 * 7 6 5
35 35 H 1.08997 * 109.45805 * 305.84965 * 9 8 7
36 36 H 1.08997 * 109.46122 * 65.82298 * 9 8 7
37 37 H 1.09001 * 109.50285 * 180.87728 * 10 9 8
38 38 H 1.09006 * 109.53185 * 60.78154 * 10 9 8
39 39 H 1.09004 * 109.52012 * 297.75085 * 11 10 9
40 40 H 0.97001 * 120.00471 * 179.97438 * 15 14 12
41 41 H 1.09004 * 109.49881 * 182.40830 * 20 11 10
42 42 H 1.09004 * 109.53156 * 62.31219 * 20 11 10
43 43 H 1.08997 * 109.46652 * 294.17995 * 21 8 7
44 44 H 1.08998 * 109.45904 * 54.15727 * 21 8 7
45 45 H 1.08002 * 120.17572 * 359.94750 * 23 22 6
46 46 H 1.07995 * 119.51245 * 179.97438 * 24 23 22
47 47 H 1.07990 * 119.51273 * 180.02562 * 25 24 23
48 48 H 1.08001 * 120.16605 * 180.02562 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0455 1.2100 0.0000
4 6 1.3058 2.3592 0.0008
5 6 1.9227 3.6069 0.0003
6 6 3.2798 3.7196 0.0002
7 6 3.9253 5.0814 0.0002
8 7 4.3527 5.4207 -1.3637
9 6 3.2954 5.1187 -2.3370
10 6 3.8250 5.3464 -3.7546
11 6 4.2758 6.8027 -3.8981
12 6 4.8533 7.0195 -5.2730
13 1 5.8784 7.3408 -5.3836
14 6 4.0729 6.8075 -6.3898
15 7 2.8245 6.4166 -6.2551
16 14 4.7890 7.0754 -8.0941
17 1 5.3933 5.8096 -8.5818
18 1 3.7107 7.4992 -9.0230
19 1 5.8321 8.1305 -8.0325
20 6 5.3421 7.1051 -2.8416
21 6 4.7685 6.8264 -1.4505
22 6 4.0761 2.5619 0.0000
23 6 5.4794 2.6415 0.0004
24 6 6.2186 1.4988 0.0008
25 6 5.6050 0.2475 0.0013
26 6 4.2486 0.1324 0.0072
27 6 3.4529 1.2893 0.0009
28 1 -0.3634 -1.0276 0.0005
29 1 -0.3634 0.5139 0.8900
30 1 -0.3634 0.5138 -0.8900
31 1 0.2275 2.2983 0.0011
32 1 1.3153 4.4999 0.0006
33 1 3.2082 5.8234 0.3514
34 1 4.7922 5.0726 0.6609
35 1 2.9870 4.0790 -2.2272
36 1 2.4409 5.7716 -2.1593
37 1 3.0353 5.1372 -4.4762
38 1 4.6709 4.6839 -3.9385
39 1 3.4217 7.4643 -3.7533
40 1 2.2753 6.2678 -7.0407
41 1 5.6362 8.1524 -2.9109
42 1 6.2124 6.4708 -3.0103
43 1 3.9071 7.4714 -1.2769
44 1 5.5301 7.0270 -0.6970
45 1 5.9685 3.6045 0.0000
46 1 7.2967 1.5625 0.0007
47 1 6.2146 -0.6439 0.0021
48 1 3.7867 -0.8439 0.0079
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000542852718.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:44:54
Heat of formation + Delta-G solvation = -11.330338 kcal
Electronic energy + Delta-G solvation = -27860.840739 eV
Core-core repulsion = 24265.659610 eV
Total energy + Delta-G solvation = -3595.181129 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 325.178 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-41.86829 -40.01409 -39.30439 -37.24561 -35.64067 -33.85380 -32.50370 -31.48868
-31.33379 -30.15488 -28.54177 -27.73843 -25.77788 -24.16807 -23.93876 -23.65278
-23.11763 -21.27180 -20.31251 -19.02785 -18.46706 -18.34816 -17.82399 -16.96428
-16.68428 -16.37617 -16.17386 -15.92751 -15.66364 -15.12808 -14.89380 -14.75334
-14.60350 -14.45726 -14.18440 -14.05633 -13.95803 -13.77161 -13.11918 -13.03396
-12.86537 -12.76837 -12.63118 -12.57043 -12.52797 -12.24967 -12.02496 -11.86374
-11.74451 -11.66374 -11.62166 -11.31539 -10.78646 -10.62952 -10.36649 -10.33909
-9.57965 -9.15757 -8.40957 -8.07139 -6.20471 -0.32440 0.06392 1.12615
1.40509 1.41329 1.51331 2.07431 2.26339 2.44070 3.02301 3.19681
3.33629 3.67946 3.81891 3.87391 4.11622 4.15226 4.20469 4.26923
4.32300 4.35482 4.37671 4.42347 4.50643 4.51701 4.58611 4.64351
4.67278 4.73207 4.78283 4.83875 4.92876 4.98022 5.02244 5.11593
5.17553 5.21219 5.25519 5.32597 5.36346 5.47369 5.58913 5.59641
5.63697 5.70089 5.81508 6.01676 6.04459 6.09938 6.30566 6.36291
6.40549 6.42050 6.91738 7.47275 8.97379
Molecular weight = 325.18amu
Principal moments of inertia in cm(-1)
A = 0.013367 B = 0.003411 C = 0.003237
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2094.243815 B = 8207.679896 C = 8647.086030
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 O -0.326 6.326
3 C 0.131 3.869
4 C -0.223 4.223
5 C -0.082 4.082
6 C -0.111 4.111
7 C 0.099 3.901
8 N -0.530 5.530
9 C 0.078 3.922
10 C -0.092 4.092
11 C 0.046 3.954
12 C -0.532 4.532
13 H 0.051 0.949
14 C 0.012 3.988
15 N -0.919 5.919
16 Si 0.952 3.048
17 H -0.277 1.277
18 H -0.284 1.284
19 H -0.267 1.267
20 C -0.098 4.098
21 C 0.066 3.934
22 C -0.019 4.019
23 C -0.111 4.111
24 C -0.113 4.113
25 C -0.126 4.126
26 C -0.104 4.104
27 C -0.094 4.094
28 H 0.123 0.877
29 H 0.067 0.933
30 H 0.058 0.942
31 H 0.147 0.853
32 H 0.129 0.871
33 H 0.046 0.954
34 H 0.098 0.902
35 H 0.060 0.940
36 H 0.011 0.989
37 H 0.055 0.945
38 H 0.024 0.976
39 H -0.012 1.012
40 H 0.259 0.741
41 H 0.054 0.946
42 H 0.051 0.949
43 H 0.023 0.977
44 H 0.093 0.907
45 H 0.138 0.862
46 H 0.146 0.854
47 H 0.149 0.851
48 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.080 -12.072 17.820 21.551
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 O -0.239 6.239
3 C 0.085 3.915
4 C -0.242 4.242
5 C -0.101 4.101
6 C -0.111 4.111
7 C -0.027 4.027
8 N -0.255 5.255
9 C -0.050 4.050
10 C -0.130 4.130
11 C 0.027 3.973
12 C -0.571 4.571
13 H 0.070 0.930
14 C -0.186 4.186
15 N -0.559 5.559
16 Si 0.777 3.223
17 H -0.203 1.203
18 H -0.209 1.209
19 H -0.191 1.191
20 C -0.136 4.136
21 C -0.062 4.062
22 C -0.020 4.020
23 C -0.129 4.129
24 C -0.131 4.131
25 C -0.144 4.144
26 C -0.122 4.122
27 C -0.094 4.094
28 H 0.142 0.858
29 H 0.086 0.914
30 H 0.077 0.923
31 H 0.165 0.835
32 H 0.147 0.853
33 H 0.064 0.936
34 H 0.116 0.884
35 H 0.079 0.921
36 H 0.030 0.970
37 H 0.074 0.926
38 H 0.043 0.957
39 H 0.006 0.994
40 H 0.068 0.932
41 H 0.073 0.927
42 H 0.070 0.930
43 H 0.041 0.959
44 H 0.112 0.888
45 H 0.156 0.844
46 H 0.164 0.836
47 H 0.166 0.834
48 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges -0.750 -12.582 17.606 21.653
hybrid contribution -1.087 0.887 -1.210 1.853
sum -1.837 -11.695 16.396 20.223
Atomic orbital electron populations
1.23368 0.76314 1.05732 1.02207 1.85965 1.23430 1.26339 1.88154
1.18782 0.91387 0.85105 0.96208 1.20979 1.01086 0.91700 1.10444
1.20660 0.94147 0.97565 0.97733 1.19568 0.93526 0.94412 1.03608
1.21051 0.99403 0.91839 0.90451 1.62093 1.38306 1.21216 1.03907
1.21931 0.91538 0.98814 0.92709 1.21387 0.99349 0.98311 0.93984
1.18647 0.93167 0.92450 0.93036 1.21611 0.97953 1.44974 0.92519
0.93040 1.25743 0.95180 0.94990 1.02734 1.70028 1.07962 1.47695
1.30181 0.85653 0.78155 0.78514 0.79931 1.20318 1.20918 1.19149
1.21529 0.98605 0.99633 0.93845 1.22084 0.99017 0.87163 0.97929
1.17874 0.94346 0.91237 0.98522 1.21248 0.92029 1.00066 0.99517
1.21238 1.01353 0.92139 0.98329 1.21157 0.94551 0.98634 1.00068
1.21079 0.94330 0.97476 0.99278 1.17737 0.90769 0.94479 1.06412
0.85837 0.91407 0.92309 0.83550 0.85315 0.93629 0.88425 0.92147
0.97038 0.92614 0.95722 0.99426 0.93200 0.92691 0.93017 0.95911
0.88847 0.84414 0.83647 0.83369 0.84556
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.26 9.81 113.37 1.11 1.37 16
2 O -0.33 -7.58 9.72 -91.33 -0.89 -8.47 16
3 C 0.13 3.54 6.67 22.57 0.15 3.69 16
4 C -0.22 -5.65 8.99 22.13 0.20 -5.46 16
5 C -0.08 -2.24 8.51 22.02 0.19 -2.05 16
6 C -0.11 -3.20 3.71 -19.79 -0.07 -3.27 16
7 C 0.10 2.75 4.66 85.56 0.40 3.15 16
8 N -0.53 -18.32 4.80 -900.91 -4.32 -22.64 16
9 C 0.08 3.20 4.80 86.32 0.41 3.62 16
10 C -0.09 -4.62 5.12 30.65 0.16 -4.47 16
11 C 0.05 2.36 2.16 -11.46 -0.02 2.33 16
12 C -0.53 -30.29 8.57 25.60 0.22 -30.07 16
13 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16
14 C 0.01 0.67 5.31 84.65 0.45 1.12 16
15 N -0.92 -54.65 11.37 21.45 0.24 -54.41 16
16 Si 0.95 44.76 29.54 68.60 2.03 46.79 16
17 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16
18 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16
19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16
20 C -0.10 -4.11 5.32 30.65 0.16 -3.95 16
21 C 0.07 2.23 5.42 86.32 0.47 2.70 16
22 C -0.02 -0.57 5.74 -21.30 -0.12 -0.69 16
23 C -0.11 -2.96 9.29 22.34 0.21 -2.75 16
24 C -0.11 -2.56 9.95 22.04 0.22 -2.34 16
25 C -0.13 -2.74 9.95 22.05 0.22 -2.52 16
26 C -0.10 -2.59 9.56 22.31 0.21 -2.37 16
27 C -0.09 -2.70 5.75 -21.23 -0.12 -2.82 16
28 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16
29 H 0.07 0.82 7.65 -2.38 -0.02 0.80 16
30 H 0.06 0.85 7.66 -2.39 -0.02 0.83 16
31 H 0.15 2.91 6.21 -2.91 -0.02 2.89 16
32 H 0.13 3.19 8.00 -2.91 -0.02 3.16 16
33 H 0.05 1.19 7.91 -2.39 -0.02 1.17 16
34 H 0.10 2.33 6.99 -2.39 -0.02 2.31 16
35 H 0.06 2.47 6.02 -2.39 -0.01 2.46 16
36 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16
37 H 0.06 3.17 6.18 -2.39 -0.01 3.16 16
38 H 0.02 1.27 8.14 -2.38 -0.02 1.26 16
39 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16
40 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16
41 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16
42 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16
43 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16
44 H 0.09 2.57 8.12 -2.39 -0.02 2.55 16
45 H 0.14 3.52 6.60 -2.91 -0.02 3.50 16
46 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16
47 H 0.15 2.27 8.06 -2.92 -0.02 2.25 16
48 H 0.14 3.00 7.62 -2.91 -0.02 2.98 16
Total: -1.00 -67.26 374.16 2.43 -64.82
By element:
Atomic # 1 Polarization: 17.75 SS G_CDS: 0.94 Total: 18.69 kcal
Atomic # 6 Polarization: -49.22 SS G_CDS: 4.44 Total: -44.78 kcal
Atomic # 7 Polarization: -72.97 SS G_CDS: -4.08 Total: -77.05 kcal
Atomic # 8 Polarization: -7.58 SS G_CDS: -0.89 Total: -8.47 kcal
Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal
Total: -67.26 2.43 -64.82 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000542852718.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.495 kcal
(2) G-P(sol) polarization free energy of solvation -67.260 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.765 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.825 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.330 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds