Wall clock time and date at job start Tue Mar 31 2020 14:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35886 * 117.00086 * 2 1 4 4 C 1.39851 * 119.56459 * 0.02562 * 3 2 1 5 5 C 1.35982 * 120.93232 * 179.71669 * 4 3 2 6 6 C 1.40589 * 119.73039 * 0.25895 * 5 4 3 7 7 C 1.40531 * 121.22190 * 180.02562 * 6 5 4 8 8 C 1.36105 * 119.67454 * 179.97438 * 7 6 5 9 9 C 1.39369 * 120.98952 * 0.04289 * 8 7 6 10 10 C 1.36088 * 120.98525 * 359.96150 * 9 8 7 11 11 C 1.40577 * 119.65831 * 0.02562 * 10 9 8 12 12 C 1.36568 * 119.56941 * 180.24301 * 3 2 1 13 13 C 1.50696 * 120.19011 * 359.97438 * 12 3 2 14 14 N 1.46903 * 109.47184 * 270.28276 * 13 12 3 15 15 C 1.46846 * 111.00217 * 294.20834 * 14 13 12 16 16 C 1.53037 * 109.52481 * 174.16128 * 15 14 13 17 17 C 1.53116 * 109.27616 * 59.17903 * 16 15 14 18 18 C 1.50701 * 109.57092 * 182.40687 * 17 16 15 19 19 H 1.08001 * 119.99488 * 119.71364 * 18 17 16 20 20 C 1.37875 * 120.00602 * 299.71872 * 18 17 16 21 21 N 1.31516 * 119.99738 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00534 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46971 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47218 * 119.99698 * 22 20 18 25 25 H 1.48495 * 109.47479 * 240.00234 * 22 20 18 26 26 C 1.53113 * 109.16440 * 302.34340 * 17 16 15 27 27 C 1.46853 * 110.99735 * 170.00033 * 14 13 12 28 28 H 1.09008 * 109.47245 * 59.99948 * 1 2 3 29 29 H 1.09002 * 109.47496 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47221 * 299.99819 * 1 2 3 31 31 H 1.08002 * 119.53806 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.14080 * 180.23316 * 5 4 3 33 33 H 1.07999 * 120.16171 * 359.97438 * 7 6 5 34 34 H 1.07997 * 119.50351 * 180.02562 * 8 7 6 35 35 H 1.08008 * 119.51048 * 179.97438 * 9 8 7 36 36 H 1.08002 * 120.17032 * 179.97438 * 10 9 8 37 37 H 1.09002 * 109.47307 * 30.28363 * 13 12 3 38 38 H 1.09007 * 109.47069 * 150.28496 * 13 12 3 39 39 H 1.09000 * 109.46084 * 294.18205 * 15 14 13 40 40 H 1.09007 * 109.45845 * 54.14479 * 15 14 13 41 41 H 1.08998 * 109.49935 * 299.23621 * 16 15 14 42 42 H 1.09000 * 109.53421 * 179.14648 * 16 15 14 43 43 H 1.09000 * 109.52304 * 62.25782 * 17 16 15 44 44 H 0.97003 * 120.00341 * 180.02562 * 21 20 18 45 45 H 1.09001 * 109.50546 * 297.71785 * 26 17 16 46 46 H 1.09002 * 109.53674 * 177.61530 * 26 17 16 47 47 H 1.08999 * 109.46059 * 305.85508 * 27 14 13 48 48 H 1.08995 * 109.46016 * 65.83964 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2754 2.3778 0.0005 5 6 1.8636 3.6038 0.0063 6 6 3.2659 3.7043 0.0063 7 6 3.9066 4.9550 0.0128 8 6 5.2663 5.0156 0.0131 9 6 6.0364 3.8539 0.0063 10 6 5.4510 2.6254 -0.0002 11 6 4.0490 2.5228 -0.0005 12 6 3.4102 1.2719 -0.0050 13 6 4.2256 0.0047 -0.0100 14 7 4.4900 -0.4129 1.3734 15 6 5.3494 0.5590 2.0614 16 6 5.4841 0.1694 3.5352 17 6 6.0884 -1.2340 3.6339 18 6 6.1694 -1.6482 5.0806 19 1 5.6403 -2.5259 5.4213 20 6 6.9187 -0.9066 5.9691 21 7 7.5632 0.1620 5.5541 22 14 7.0185 -1.4196 7.7625 23 1 6.2100 -2.6475 7.9718 24 1 8.4334 -1.6922 8.1214 25 1 6.4918 -0.3275 8.6198 26 6 5.2000 -2.2187 2.8687 27 6 5.0735 -1.7599 1.4141 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.1978 2.3044 0.0014 32 1 1.2561 4.4968 0.0105 33 1 3.3229 5.8637 0.0174 34 1 5.7558 5.9782 0.0185 35 1 7.1138 3.9298 0.0063 36 1 6.0605 1.7338 -0.0058 37 1 3.6740 -0.7803 -0.5273 38 1 5.1709 0.1828 -0.5227 39 1 6.3350 0.5657 1.5959 40 1 4.9061 1.5521 1.9872 41 1 4.5005 0.1760 4.0046 42 1 6.1342 0.8822 4.0426 43 1 7.0880 -1.2316 3.1992 44 1 8.0907 0.6835 6.1791 45 1 4.2118 -2.2497 3.3277 46 1 5.6468 -3.2124 2.8992 47 1 4.4299 -2.4510 0.8699 48 1 6.0605 -1.7422 0.9519 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542853906.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:44 Heat of formation + Delta-G solvation = 7.448958 kcal Electronic energy + Delta-G solvation = -28246.641657 eV Core-core repulsion = 24652.274860 eV Total energy + Delta-G solvation = -3594.366798 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 6.29 seconds Orbital eigenvalues (eV) -40.84488 -38.78309 -38.02460 -35.52034 -34.41747 -32.67678 -30.93517 -29.84664 -29.78431 -29.37641 -27.20100 -26.27538 -24.39416 -23.18347 -22.59133 -21.96977 -21.62679 -20.06751 -18.52105 -18.27019 -17.12504 -16.87763 -16.30808 -15.79150 -15.46117 -15.07675 -14.50219 -14.41883 -14.30512 -14.11599 -13.84728 -13.50785 -13.30569 -12.97339 -12.88062 -12.63831 -12.46881 -12.26986 -11.95461 -11.81002 -11.54982 -11.34665 -11.29843 -11.01692 -10.91075 -10.65115 -10.60819 -10.56285 -10.29574 -10.08406 -9.87865 -9.56646 -9.32684 -8.85819 -8.58806 -8.33822 -8.22387 -7.62929 -7.43961 -5.90252 -3.95072 0.59608 1.12611 2.12238 3.03817 3.34455 3.36730 3.42323 3.46672 4.13791 4.50863 4.56047 4.74869 4.77052 4.89401 4.96920 5.05527 5.11939 5.16725 5.22542 5.37005 5.40017 5.41813 5.46214 5.56799 5.63119 5.86631 5.87564 5.97696 6.02731 6.07654 6.19557 6.21505 6.31006 6.32873 6.41078 6.44982 6.59304 6.62792 6.74469 6.75524 6.83617 6.96405 7.03084 7.18274 7.28313 7.45526 7.55811 7.73644 7.83076 7.94168 8.14737 8.25860 8.56905 9.08805 9.68816 11.15888 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.003970 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.696092 B = 7051.078195 C = 8220.022200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.303 6.303 3 C 0.143 3.857 4 C -0.188 4.188 5 C -0.073 4.073 6 C -0.083 4.083 7 C -0.100 4.100 8 C -0.127 4.127 9 C -0.109 4.109 10 C -0.108 4.108 11 C -0.006 4.006 12 C -0.101 4.101 13 C 0.102 3.898 14 N -0.525 5.525 15 C 0.055 3.945 16 C -0.102 4.102 17 C 0.048 3.952 18 C -0.508 4.508 19 H 0.054 0.946 20 C 0.060 3.940 21 N -0.892 5.892 22 Si 0.888 3.112 23 H -0.274 1.274 24 H -0.286 1.286 25 H -0.285 1.285 26 C -0.105 4.105 27 C 0.062 3.938 28 H 0.050 0.950 29 H 0.097 0.903 30 H 0.054 0.946 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.080 0.920 38 H 0.035 0.965 39 H 0.019 0.981 40 H 0.061 0.939 41 H 0.040 0.960 42 H 0.090 0.910 43 H 0.019 0.981 44 H 0.258 0.742 45 H 0.056 0.944 46 H 0.048 0.952 47 H 0.057 0.943 48 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.205 7.623 -15.530 20.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.216 6.216 3 C 0.097 3.903 4 C -0.207 4.207 5 C -0.091 4.091 6 C -0.083 4.083 7 C -0.118 4.118 8 C -0.145 4.145 9 C -0.127 4.127 10 C -0.125 4.125 11 C -0.006 4.006 12 C -0.102 4.102 13 C -0.025 4.025 14 N -0.250 5.250 15 C -0.073 4.073 16 C -0.141 4.141 17 C 0.029 3.971 18 C -0.546 4.546 19 H 0.072 0.928 20 C -0.140 4.140 21 N -0.531 5.531 22 Si 0.716 3.284 23 H -0.199 1.199 24 H -0.212 1.212 25 H -0.211 1.211 26 C -0.143 4.143 27 C -0.066 4.066 28 H 0.068 0.932 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.147 0.853 37 H 0.099 0.901 38 H 0.053 0.947 39 H 0.037 0.963 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.109 0.891 43 H 0.038 0.962 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.076 0.924 48 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -11.449 7.523 -15.206 20.467 hybrid contribution 0.565 0.064 0.704 0.905 sum -10.884 7.587 -14.502 19.656 Atomic orbital electron populations 1.23024 0.79129 1.03785 1.00839 1.86177 1.20586 1.26441 1.88393 1.18362 0.91522 0.84086 0.96367 1.20993 1.00012 0.92455 1.07211 1.20791 0.93372 0.97163 0.97777 1.17991 0.93236 0.93118 1.03979 1.20916 0.94856 0.96091 0.99922 1.20781 0.93987 0.98361 1.01396 1.20855 1.00126 0.92360 0.99389 1.21179 0.93384 0.98398 0.99586 1.17681 0.93355 0.91473 0.98114 1.18824 0.90900 0.94468 1.06054 1.20770 0.96801 0.93628 0.91327 1.62017 1.47851 1.02632 1.12456 1.22478 0.92626 0.94612 0.97535 1.21638 1.00322 1.01229 0.90869 1.18686 0.93327 0.90660 0.94407 1.21260 1.28943 1.10676 0.93722 0.92776 1.24961 0.95533 0.95076 0.98451 1.69895 1.31965 1.16787 1.34474 0.86604 0.77608 0.78535 0.85652 1.19856 1.21184 1.21136 1.21665 1.00918 0.98965 0.92740 1.22110 0.96035 0.89366 0.99062 0.93165 0.88411 0.92764 0.85454 0.85471 0.85949 0.86254 0.85994 0.85266 0.90123 0.94748 0.96268 0.92031 0.94088 0.89138 0.96240 0.93255 0.92551 0.93306 0.92426 0.96009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.80 101.05 0.99 1.25 16 2 O -0.30 -4.25 9.45 -19.38 -0.18 -4.44 16 3 C 0.14 2.08 6.61 -39.58 -0.26 1.82 16 4 C -0.19 -2.28 8.93 -39.79 -0.36 -2.64 16 5 C -0.07 -0.86 9.76 -39.51 -0.39 -1.24 16 6 C -0.08 -1.14 5.74 -106.81 -0.61 -1.75 16 7 C -0.10 -1.18 9.77 -39.48 -0.39 -1.56 16 8 C -0.13 -1.49 9.95 -39.93 -0.40 -1.89 16 9 C -0.11 -1.43 9.95 -39.93 -0.40 -1.82 16 10 C -0.11 -1.60 7.34 -39.47 -0.29 -1.89 16 11 C -0.01 -0.09 4.79 -106.84 -0.51 -0.60 16 12 C -0.10 -1.60 4.88 -104.39 -0.51 -2.11 16 13 C 0.10 1.67 4.64 -4.98 -0.02 1.65 16 14 N -0.52 -10.04 4.65 -236.10 -1.10 -11.14 16 15 C 0.05 1.14 4.00 -3.83 -0.02 1.12 16 16 C -0.10 -2.54 5.12 -26.65 -0.14 -2.68 16 17 C 0.05 1.23 2.16 -91.65 -0.20 1.03 16 18 C -0.51 -14.33 8.56 -34.44 -0.29 -14.62 16 19 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.71 5.31 -17.82 -0.09 1.61 16 21 N -0.89 -25.96 11.37 55.43 0.63 -25.33 16 22 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 23 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 C -0.11 -2.30 5.32 -26.65 -0.14 -2.45 16 27 C 0.06 1.17 5.46 -3.83 -0.02 1.15 16 28 H 0.05 0.37 7.64 -51.92 -0.40 -0.02 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.47 7.63 -51.93 -0.40 0.08 16 31 H 0.13 1.18 6.21 -52.49 -0.33 0.85 16 32 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 33 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 36 H 0.13 1.96 4.83 -52.49 -0.25 1.70 16 37 H 0.08 1.26 7.34 -51.93 -0.38 0.88 16 38 H 0.03 0.54 6.40 -51.92 -0.33 0.21 16 39 H 0.02 0.40 7.21 -51.93 -0.37 0.03 16 40 H 0.06 1.27 5.10 -51.93 -0.26 1.00 16 41 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.09 2.49 6.18 -51.93 -0.32 2.17 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 47 H 0.06 0.98 8.02 -51.93 -0.42 0.56 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 368.11 15.07 5.55 5.55 Total: -1.00 -31.30 368.11 -11.40 -42.70 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -7.23 Total: 1.54 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -4.04 Total: -25.63 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.47 Total: -36.46 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: -0.18 Total: -4.44 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.30 -11.40 -42.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542853906.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.145 kcal (2) G-P(sol) polarization free energy of solvation -31.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.29 seconds