Wall clock time and date at job start Tue Mar 31 2020 14:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35886 * 117.00086 * 2 1 4 4 C 1.39851 * 119.56459 * 0.02562 * 3 2 1 5 5 C 1.35982 * 120.93232 * 179.71669 * 4 3 2 6 6 C 1.40589 * 119.73039 * 0.25895 * 5 4 3 7 7 C 1.40531 * 121.22190 * 180.02562 * 6 5 4 8 8 C 1.36105 * 119.67454 * 179.97438 * 7 6 5 9 9 C 1.39369 * 120.98952 * 0.04289 * 8 7 6 10 10 C 1.36088 * 120.98525 * 359.96150 * 9 8 7 11 11 C 1.40577 * 119.65831 * 0.02562 * 10 9 8 12 12 C 1.36568 * 119.56941 * 180.24301 * 3 2 1 13 13 C 1.50696 * 120.19011 * 359.97438 * 12 3 2 14 14 N 1.46903 * 109.47184 * 270.28276 * 13 12 3 15 15 C 1.46846 * 111.00217 * 294.20834 * 14 13 12 16 16 C 1.53037 * 109.52481 * 174.16128 * 15 14 13 17 17 C 1.53116 * 109.27616 * 59.17903 * 16 15 14 18 18 C 1.50701 * 109.57092 * 182.40687 * 17 16 15 19 19 H 1.08001 * 119.99488 * 119.71364 * 18 17 16 20 20 C 1.37875 * 120.00602 * 299.71872 * 18 17 16 21 21 N 1.31516 * 119.99738 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00534 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46971 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47218 * 119.99698 * 22 20 18 25 25 H 1.48495 * 109.47479 * 240.00234 * 22 20 18 26 26 C 1.53113 * 109.16440 * 302.34340 * 17 16 15 27 27 C 1.46853 * 110.99735 * 170.00033 * 14 13 12 28 28 H 1.09008 * 109.47245 * 59.99948 * 1 2 3 29 29 H 1.09002 * 109.47496 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47221 * 299.99819 * 1 2 3 31 31 H 1.08002 * 119.53806 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.14080 * 180.23316 * 5 4 3 33 33 H 1.07999 * 120.16171 * 359.97438 * 7 6 5 34 34 H 1.07997 * 119.50351 * 180.02562 * 8 7 6 35 35 H 1.08008 * 119.51048 * 179.97438 * 9 8 7 36 36 H 1.08002 * 120.17032 * 179.97438 * 10 9 8 37 37 H 1.09002 * 109.47307 * 30.28363 * 13 12 3 38 38 H 1.09007 * 109.47069 * 150.28496 * 13 12 3 39 39 H 1.09000 * 109.46084 * 294.18205 * 15 14 13 40 40 H 1.09007 * 109.45845 * 54.14479 * 15 14 13 41 41 H 1.08998 * 109.49935 * 299.23621 * 16 15 14 42 42 H 1.09000 * 109.53421 * 179.14648 * 16 15 14 43 43 H 1.09000 * 109.52304 * 62.25782 * 17 16 15 44 44 H 0.97003 * 120.00341 * 180.02562 * 21 20 18 45 45 H 1.09001 * 109.50546 * 297.71785 * 26 17 16 46 46 H 1.09002 * 109.53674 * 177.61530 * 26 17 16 47 47 H 1.08999 * 109.46059 * 305.85508 * 27 14 13 48 48 H 1.08995 * 109.46016 * 65.83964 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2754 2.3778 0.0005 5 6 1.8636 3.6038 0.0063 6 6 3.2659 3.7043 0.0063 7 6 3.9066 4.9550 0.0128 8 6 5.2663 5.0156 0.0131 9 6 6.0364 3.8539 0.0063 10 6 5.4510 2.6254 -0.0002 11 6 4.0490 2.5228 -0.0005 12 6 3.4102 1.2719 -0.0050 13 6 4.2256 0.0047 -0.0100 14 7 4.4900 -0.4129 1.3734 15 6 5.3494 0.5590 2.0614 16 6 5.4841 0.1694 3.5352 17 6 6.0884 -1.2340 3.6339 18 6 6.1694 -1.6482 5.0806 19 1 5.6403 -2.5259 5.4213 20 6 6.9187 -0.9066 5.9691 21 7 7.5632 0.1620 5.5541 22 14 7.0185 -1.4196 7.7625 23 1 6.2100 -2.6475 7.9718 24 1 8.4334 -1.6922 8.1214 25 1 6.4918 -0.3275 8.6198 26 6 5.2000 -2.2187 2.8687 27 6 5.0735 -1.7599 1.4141 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.1978 2.3044 0.0014 32 1 1.2561 4.4968 0.0105 33 1 3.3229 5.8637 0.0174 34 1 5.7558 5.9782 0.0185 35 1 7.1138 3.9298 0.0063 36 1 6.0605 1.7338 -0.0058 37 1 3.6740 -0.7803 -0.5273 38 1 5.1709 0.1828 -0.5227 39 1 6.3350 0.5657 1.5959 40 1 4.9061 1.5521 1.9872 41 1 4.5005 0.1760 4.0046 42 1 6.1342 0.8822 4.0426 43 1 7.0880 -1.2316 3.1992 44 1 8.0907 0.6835 6.1791 45 1 4.2118 -2.2497 3.3277 46 1 5.6468 -3.2124 2.8992 47 1 4.4299 -2.4510 0.8699 48 1 6.0605 -1.7422 0.9519 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542853906.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:37 Heat of formation + Delta-G solvation = -9.531743 kcal Electronic energy + Delta-G solvation = -28247.377996 eV Core-core repulsion = 24652.274860 eV Total energy + Delta-G solvation = -3595.103136 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 3.77 seconds Orbital eigenvalues (eV) -41.86089 -39.78943 -39.58609 -36.53968 -36.00387 -34.26733 -32.57982 -31.47893 -30.80112 -30.54559 -28.37141 -27.61070 -26.02532 -24.21486 -23.87373 -23.39262 -23.28426 -21.29470 -20.34313 -19.18621 -18.46030 -18.12744 -17.84021 -17.05104 -16.54676 -16.41246 -16.19350 -15.73185 -15.45201 -15.30126 -15.04575 -14.84798 -14.51931 -14.47739 -14.15849 -14.02195 -13.91911 -13.76627 -13.19690 -13.03285 -12.87754 -12.85069 -12.68231 -12.49597 -12.30733 -12.25400 -12.08796 -11.92487 -11.83547 -11.50451 -11.47522 -11.33730 -10.83879 -10.70786 -10.47979 -10.37550 -9.30781 -9.11815 -8.50981 -8.07410 -6.21076 -0.37442 0.14249 1.12362 1.39260 1.40633 1.52569 2.06763 2.43729 2.49057 3.02926 3.18967 3.35480 3.64496 3.83580 3.96979 4.02003 4.12988 4.20731 4.27286 4.30193 4.37770 4.39738 4.44983 4.46590 4.48446 4.52271 4.58173 4.66037 4.76682 4.78551 4.88265 4.90712 4.95655 4.99634 5.08351 5.15086 5.23445 5.26929 5.31246 5.33735 5.38969 5.56684 5.62484 5.63926 5.65552 5.84781 5.99016 6.02898 6.09498 6.30879 6.35203 6.40916 6.54119 6.90306 7.46449 8.97408 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.003970 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.696092 B = 7051.078195 C = 8220.022200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.327 6.327 3 C 0.140 3.860 4 C -0.196 4.196 5 C -0.062 4.062 6 C -0.106 4.106 7 C -0.093 4.093 8 C -0.137 4.137 9 C -0.112 4.112 10 C -0.138 4.138 11 C -0.022 4.022 12 C -0.139 4.139 13 C 0.111 3.889 14 N -0.531 5.531 15 C 0.077 3.923 16 C -0.091 4.091 17 C 0.046 3.954 18 C -0.532 4.532 19 H 0.051 0.949 20 C 0.012 3.988 21 N -0.918 5.918 22 Si 0.954 3.046 23 H -0.267 1.267 24 H -0.279 1.279 25 H -0.281 1.281 26 C -0.097 4.097 27 C 0.067 3.933 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.059 0.941 31 H 0.158 0.842 32 H 0.165 0.835 33 H 0.157 0.843 34 H 0.148 0.852 35 H 0.133 0.867 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.035 0.965 39 H 0.012 0.988 40 H 0.064 0.936 41 H 0.022 0.978 42 H 0.059 0.941 43 H -0.011 1.011 44 H 0.260 0.740 45 H 0.048 0.952 46 H 0.055 0.945 47 H 0.086 0.914 48 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.309 8.840 -16.066 22.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.241 6.241 3 C 0.094 3.906 4 C -0.214 4.214 5 C -0.080 4.080 6 C -0.106 4.106 7 C -0.111 4.111 8 C -0.155 4.155 9 C -0.130 4.130 10 C -0.156 4.156 11 C -0.023 4.023 12 C -0.141 4.141 13 C -0.016 4.016 14 N -0.256 5.256 15 C -0.051 4.051 16 C -0.130 4.130 17 C 0.027 3.973 18 C -0.570 4.570 19 H 0.069 0.931 20 C -0.186 4.186 21 N -0.558 5.558 22 Si 0.779 3.221 23 H -0.192 1.192 24 H -0.205 1.205 25 H -0.206 1.206 26 C -0.135 4.135 27 C -0.061 4.061 28 H 0.090 0.910 29 H 0.130 0.870 30 H 0.078 0.922 31 H 0.176 0.824 32 H 0.183 0.817 33 H 0.175 0.825 34 H 0.166 0.834 35 H 0.151 0.849 36 H 0.131 0.869 37 H 0.105 0.895 38 H 0.053 0.947 39 H 0.030 0.970 40 H 0.083 0.917 41 H 0.041 0.959 42 H 0.078 0.922 43 H 0.007 0.993 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.074 0.926 47 H 0.104 0.896 48 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -13.566 8.727 -15.758 22.550 hybrid contribution 1.166 -0.273 0.837 1.461 sum -12.400 8.454 -14.921 21.163 Atomic orbital electron populations 1.23320 0.76838 1.05295 1.02128 1.86132 1.23082 1.26636 1.88210 1.18621 0.91454 0.85194 0.95380 1.21312 1.01434 0.91696 1.06972 1.21243 0.92839 0.98485 0.95427 1.18368 0.94361 0.93262 1.04595 1.21338 0.95161 0.96625 0.97961 1.21121 0.94327 0.98919 1.01105 1.21141 1.01064 0.92468 0.98283 1.21143 0.93628 0.98612 1.02183 1.17865 0.93620 0.92213 0.98557 1.18849 0.91731 0.94218 1.09280 1.20701 0.97126 0.94586 0.89200 1.61972 1.46882 1.02131 1.14625 1.22108 0.92771 0.95256 0.94943 1.21400 0.98169 1.00130 0.93299 1.18647 0.92564 0.92194 0.93890 1.21606 1.29340 1.10840 0.95240 0.93110 1.25754 0.95108 0.95018 1.02769 1.70037 1.32286 1.17558 1.35892 0.85570 0.77828 0.78338 0.80317 1.19173 1.20487 1.20648 1.21524 0.99413 0.98352 0.94192 1.22057 0.96848 0.90018 0.97167 0.91019 0.86971 0.92188 0.82440 0.81749 0.82503 0.83424 0.84926 0.86935 0.89477 0.94715 0.97005 0.91723 0.95911 0.92250 0.99317 0.93127 0.93324 0.92586 0.89601 0.96032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.80 113.37 1.11 1.41 16 2 O -0.33 -8.78 9.45 -92.26 -0.87 -9.65 16 3 C 0.14 3.94 6.61 22.27 0.15 4.09 16 4 C -0.20 -4.25 8.93 22.14 0.20 -4.05 16 5 C -0.06 -1.27 9.76 22.32 0.22 -1.06 16 6 C -0.11 -2.71 5.74 -21.28 -0.12 -2.83 16 7 C -0.09 -1.95 9.77 22.33 0.22 -1.73 16 8 C -0.14 -2.96 9.95 22.05 0.22 -2.74 16 9 C -0.11 -2.91 9.95 22.04 0.22 -2.69 16 10 C -0.14 -4.23 7.34 22.34 0.16 -4.07 16 11 C -0.02 -0.68 4.79 -21.30 -0.10 -0.78 16 12 C -0.14 -4.44 4.88 -19.72 -0.10 -4.54 16 13 C 0.11 3.67 4.64 85.55 0.40 4.07 16 14 N -0.53 -20.72 4.65 -900.88 -4.19 -24.90 16 15 C 0.08 3.35 4.00 86.33 0.35 3.69 16 16 C -0.09 -4.78 5.12 30.65 0.16 -4.62 16 17 C 0.05 2.45 2.16 -11.46 -0.02 2.42 16 18 C -0.53 -30.91 8.56 25.60 0.22 -30.69 16 19 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 20 C 0.01 0.68 5.31 84.65 0.45 1.13 16 21 N -0.92 -55.07 11.37 21.45 0.24 -54.83 16 22 Si 0.95 45.23 29.54 68.60 2.03 47.26 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 26 C -0.10 -4.34 5.32 30.65 0.16 -4.17 16 27 C 0.07 2.54 5.46 86.33 0.47 3.01 16 28 H 0.07 0.85 7.64 -2.38 -0.02 0.83 16 29 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 0.90 7.63 -2.39 -0.02 0.88 16 31 H 0.16 2.33 6.21 -2.91 -0.02 2.31 16 32 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 33 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 34 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 35 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 36 H 0.11 3.68 4.83 -2.91 -0.01 3.67 16 37 H 0.09 2.72 7.34 -2.39 -0.02 2.70 16 38 H 0.03 1.13 6.40 -2.38 -0.02 1.12 16 39 H 0.01 0.53 7.21 -2.39 -0.02 0.51 16 40 H 0.06 2.78 5.10 -2.38 -0.01 2.77 16 41 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.06 3.44 6.18 -2.39 -0.01 3.43 16 43 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 44 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 45 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 47 H 0.09 2.81 8.02 -2.39 -0.02 2.79 16 48 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -70.35 368.11 2.52 -67.84 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.95 Total: 18.45 kcal Atomic # 6 Polarization: -48.51 SS G_CDS: 4.35 Total: -44.16 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -3.94 Total: -79.73 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.87 Total: -9.65 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -70.35 2.52 -67.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542853906.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.306 kcal (2) G-P(sol) polarization free energy of solvation -70.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.77 seconds