Wall clock time and date at job start Tue Mar 31 2020 14:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42892 * 109.47396 * 2 1 4 4 C 1.35900 * 117.00349 * 179.97438 * 3 2 1 5 5 C 1.38750 * 120.05098 * 0.02596 * 4 3 2 6 6 C 1.38123 * 119.94159 * 179.97438 * 5 4 3 7 7 C 1.38287 * 120.05750 * 359.74609 * 6 5 4 8 8 C 1.38250 * 120.10841 * 0.50851 * 7 6 5 9 9 C 1.50702 * 119.96978 * 179.76460 * 8 7 6 10 10 H 1.09006 * 109.46990 * 159.72022 * 9 8 7 11 11 C 1.52996 * 109.47590 * 279.72380 * 9 8 7 12 12 N 1.46900 * 109.47110 * 39.72881 * 9 8 7 13 13 C 1.46899 * 111.00373 * 154.99630 * 12 9 8 14 14 C 1.50692 * 109.47770 * 179.97438 * 13 12 9 15 15 C 1.38639 * 119.75046 * 269.73333 * 14 13 12 16 16 C 1.37620 * 120.24654 * 179.71958 * 15 14 13 17 17 C 1.40718 * 119.74620 * 0.56445 * 16 15 14 18 18 C 1.41389 * 120.24408 * 179.68738 * 17 16 15 19 19 H 1.08001 * 120.00219 * 24.40494 * 18 17 16 20 20 C 1.39952 * 119.99960 * 204.41266 * 18 17 16 21 21 N 1.30818 * 119.99717 * 17.85218 * 20 18 17 22 22 Si 1.86795 * 119.99837 * 197.85428 * 20 18 17 23 23 H 1.48501 * 109.47190 * 90.00195 * 22 20 18 24 24 H 1.48501 * 109.46872 * 209.99979 * 22 20 18 25 25 H 1.48498 * 109.47362 * 329.99476 * 22 20 18 26 26 C 1.40719 * 119.50979 * 359.70517 * 17 16 15 27 27 C 1.37616 * 119.74291 * 0.02562 * 26 17 16 28 28 C 1.38158 * 120.05560 * 359.49128 * 8 7 6 29 29 H 1.08993 * 109.47164 * 300.00085 * 1 2 3 30 30 H 1.09006 * 109.47085 * 59.99837 * 1 2 3 31 31 H 1.09001 * 109.47167 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46964 * 239.99844 * 2 1 3 33 33 H 1.08992 * 109.46974 * 120.00748 * 2 1 3 34 34 H 1.08002 * 120.03279 * 359.97438 * 5 4 3 35 35 H 1.08003 * 119.97357 * 180.02562 * 6 5 4 36 36 H 1.08005 * 119.94639 * 180.27846 * 7 6 5 37 37 H 1.08999 * 109.47432 * 180.02562 * 11 9 8 38 38 H 1.09003 * 109.47012 * 300.00744 * 11 9 8 39 39 H 1.09007 * 109.46880 * 60.00198 * 11 9 8 40 40 H 1.00904 * 110.99806 * 278.95100 * 12 9 8 41 41 H 1.09001 * 109.46891 * 299.99953 * 13 12 9 42 42 H 1.09005 * 109.46992 * 59.99606 * 13 12 9 43 43 H 1.07998 * 119.87307 * 359.97000 * 15 14 13 44 44 H 1.07999 * 120.12445 * 180.27765 * 16 15 14 45 45 H 0.97007 * 120.00060 * 180.02562 * 21 20 18 46 46 H 1.07999 * 120.12105 * 179.97438 * 26 17 16 47 47 H 1.08003 * 119.86795 * 180.02562 * 27 26 17 48 48 H 1.08001 * 120.02849 * 180.27555 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5253 0.0005 5 6 4.1999 0.4257 0.0005 6 6 5.5689 0.6093 0.0005 7 6 6.0962 1.8876 -0.0047 8 6 5.2552 2.9848 0.0006 9 6 5.8333 4.3766 0.0002 10 1 5.0809 5.0824 -0.3517 11 6 6.2602 4.7520 1.4206 12 7 7.0010 4.4215 -0.8900 13 6 7.2319 5.7843 -1.3873 14 6 8.4351 5.7911 -2.2945 15 6 9.6949 6.0240 -1.7646 16 6 10.8014 6.0267 -2.5828 17 6 10.6491 5.8038 -3.9638 18 6 11.7780 5.8109 -4.8151 19 1 12.7572 5.5926 -4.4153 20 6 11.6264 6.1010 -6.1758 21 7 10.5421 6.6968 -6.6008 22 14 12.9725 5.6373 -7.3851 23 1 12.7221 4.2685 -7.9037 24 1 12.9767 6.6014 -8.5146 25 1 14.2888 5.6736 -6.6986 26 6 9.3649 5.5741 -4.4914 27 6 8.2733 5.5703 -3.6535 28 6 3.8852 2.8065 0.0006 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.7886 -0.5730 0.0005 35 1 6.2280 -0.2463 0.0001 36 1 7.1670 2.0291 -0.0093 37 1 6.6779 5.7588 1.4204 38 1 5.3937 4.7186 2.0812 39 1 7.0126 4.0461 1.7724 40 1 7.8223 4.0613 -0.4276 41 1 6.3563 6.1219 -1.9419 42 1 7.4085 6.4533 -0.5450 43 1 9.8087 6.1998 -0.7051 44 1 11.7824 6.2039 -2.1672 45 1 10.4369 6.8976 -7.5440 46 1 9.2366 5.4024 -5.5499 47 1 7.2868 5.3939 -4.0562 48 1 3.2285 3.6640 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543185624.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:12 Heat of formation + Delta-G solvation = -7.801716 kcal Electronic energy + Delta-G solvation = -25872.386391 eV Core-core repulsion = 22277.358274 eV Total energy + Delta-G solvation = -3595.028117 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.28113 -38.43628 -37.58686 -35.96397 -33.79193 -32.22407 -31.88588 -30.15161 -29.35486 -29.15818 -28.54840 -26.05949 -24.49538 -23.33975 -22.71446 -22.18732 -20.92811 -20.33447 -19.84517 -17.92304 -17.26886 -16.31828 -16.17806 -15.97612 -15.52626 -15.25195 -14.62378 -14.42172 -14.06074 -13.69901 -13.64441 -13.49512 -13.39005 -13.26045 -12.93335 -12.84218 -12.49897 -12.40601 -12.05556 -11.91056 -11.85460 -11.62164 -11.50404 -11.37954 -11.26381 -11.07160 -10.93623 -10.87298 -10.69713 -10.41381 -10.34076 -9.58036 -9.33662 -9.12145 -8.83422 -8.18301 -8.03403 -7.40882 -7.28263 -6.74114 -4.32651 1.32170 1.48839 2.76279 3.01141 3.08125 3.11154 3.11823 3.20594 3.76460 3.94595 4.45618 4.60120 4.61289 4.72182 4.81582 4.88299 4.90598 5.06705 5.08546 5.21435 5.25976 5.42155 5.44886 5.49073 5.52016 5.68959 5.70309 5.73712 5.84044 5.93611 5.94776 6.02007 6.09781 6.27075 6.28423 6.39264 6.47550 6.49876 6.65063 6.77662 6.99114 7.09615 7.32800 7.34094 7.38865 7.42682 7.64296 7.72472 7.92108 8.08765 8.18487 8.33174 8.67791 8.92217 9.00989 10.20417 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.017856 B = 0.002126 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.748925 B =13165.876750 C =13885.050685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.319 6.319 4 C 0.125 3.875 5 C -0.216 4.216 6 C -0.082 4.082 7 C -0.131 4.131 8 C -0.021 4.021 9 C 0.117 3.883 10 H 0.085 0.915 11 C -0.176 4.176 12 N -0.674 5.674 13 C 0.125 3.875 14 C -0.213 4.213 15 C -0.085 4.085 16 C -0.228 4.228 17 C 0.112 3.888 18 C -0.463 4.463 19 H 0.077 0.923 20 C 0.076 3.924 21 N -0.792 5.792 22 Si 0.907 3.093 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.168 4.168 27 C -0.078 4.078 28 C -0.150 4.150 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.341 0.659 41 H 0.062 0.938 42 H 0.020 0.980 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.280 0.720 46 H 0.117 0.883 47 H 0.087 0.913 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.653 -10.564 12.657 22.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.234 6.234 4 C 0.080 3.920 5 C -0.235 4.235 6 C -0.101 4.101 7 C -0.150 4.150 8 C -0.022 4.022 9 C 0.007 3.993 10 H 0.103 0.897 11 C -0.235 4.235 12 N -0.305 5.305 13 C -0.002 4.002 14 C -0.214 4.214 15 C -0.104 4.104 16 C -0.247 4.247 17 C 0.110 3.890 18 C -0.493 4.493 19 H 0.095 0.905 20 C -0.142 4.142 21 N -0.418 5.418 22 Si 0.732 3.268 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.187 1.187 26 C -0.187 4.187 27 C -0.097 4.097 28 C -0.169 4.169 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.159 0.841 41 H 0.081 0.919 42 H 0.038 0.962 43 H 0.101 0.899 44 H 0.108 0.892 45 H 0.091 0.909 46 H 0.135 0.865 47 H 0.105 0.895 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.274 -10.492 11.876 22.010 hybrid contribution 1.029 -0.015 0.103 1.034 sum -14.245 -10.507 11.979 21.373 Atomic orbital electron populations 1.21775 0.92878 1.02740 1.03521 1.22735 0.95722 0.82247 1.01297 1.86047 1.19348 1.29012 1.88946 1.18873 0.81954 0.94085 0.97072 1.21148 0.94502 0.97646 1.10191 1.20925 0.94173 0.97363 0.97591 1.20878 1.00180 0.91591 1.02313 1.19629 0.91824 0.95420 0.95324 1.20476 0.94619 0.92693 0.91495 0.89722 1.22477 1.01876 1.01824 0.97338 1.60737 1.06282 1.23935 1.39568 1.20585 0.96902 0.87162 0.95558 1.18877 0.92688 1.16147 0.93730 1.20350 0.92848 1.00518 0.96686 1.20918 0.96423 1.12660 0.94735 1.17631 0.93083 0.87170 0.91164 1.19600 0.95135 1.42128 0.92430 0.90517 1.25911 0.96532 0.92349 0.99407 1.69831 1.26710 1.28250 1.16982 0.86328 0.81616 0.79275 0.79580 1.19271 1.20360 1.18662 1.21320 0.92252 1.05734 0.99404 1.20503 0.97124 0.99249 0.92797 1.20208 0.94577 0.94701 1.07409 0.91584 0.91487 0.90476 0.92108 0.92225 0.86022 0.85999 0.85729 0.92102 0.92199 0.92231 0.84052 0.91926 0.96183 0.89948 0.89214 0.90905 0.86547 0.89490 0.85595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.54 16 2 C 0.06 0.44 5.46 37.16 0.20 0.65 16 3 O -0.32 -3.70 10.14 -19.43 -0.20 -3.90 16 4 C 0.12 1.55 6.69 -39.22 -0.26 1.29 16 5 C -0.22 -2.44 9.04 -39.43 -0.36 -2.80 16 6 C -0.08 -0.95 10.04 -39.61 -0.40 -1.35 16 7 C -0.13 -1.68 9.32 -39.56 -0.37 -2.04 16 8 C -0.02 -0.28 4.95 -104.65 -0.52 -0.79 16 9 C 0.12 1.51 2.79 -68.87 -0.19 1.31 16 10 H 0.08 1.08 7.66 -51.93 -0.40 0.68 16 11 C -0.18 -1.93 9.14 37.16 0.34 -1.59 16 12 N -0.67 -10.39 5.68 -109.22 -0.62 -11.01 16 13 C 0.13 2.16 5.60 -4.98 -0.03 2.13 16 14 C -0.21 -4.56 5.41 -104.33 -0.56 -5.12 16 15 C -0.09 -1.87 9.67 -39.66 -0.38 -2.26 16 16 C -0.23 -5.59 9.80 -38.87 -0.38 -5.97 16 17 C 0.11 3.01 5.58 -106.82 -0.60 2.41 16 18 C -0.46 -12.40 9.05 -37.74 -0.34 -12.74 16 19 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 20 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 21 N -0.79 -20.68 10.95 55.55 0.61 -20.07 16 22 Si 0.91 18.83 29.59 -169.99 -5.03 13.80 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 26 C -0.17 -4.41 8.70 -38.87 -0.34 -4.75 16 27 C -0.08 -1.84 9.67 -39.66 -0.38 -2.22 16 28 C -0.15 -1.92 9.61 -39.44 -0.38 -2.30 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 33 H 0.06 0.41 7.66 -51.93 -0.40 0.02 16 34 H 0.12 1.09 6.30 -52.49 -0.33 0.76 16 35 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 36 H 0.12 1.56 7.23 -52.48 -0.38 1.18 16 37 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 40 H 0.34 5.16 7.80 -39.29 -0.31 4.85 16 41 H 0.06 1.07 7.99 -51.93 -0.42 0.66 16 42 H 0.02 0.32 7.37 -51.93 -0.38 -0.06 16 43 H 0.08 1.59 8.06 -52.49 -0.42 1.16 16 44 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 45 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 46 H 0.12 3.18 6.15 -52.49 -0.32 2.85 16 47 H 0.09 1.93 8.06 -52.48 -0.42 1.50 16 48 H 0.13 1.48 8.04 -52.49 -0.42 1.06 16 LS Contribution 394.09 15.07 5.94 5.94 Total: -1.00 -28.43 394.09 -11.45 -39.88 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -7.49 Total: 10.22 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: -4.65 Total: -34.85 kcal Atomic # 7 Polarization: -31.07 SS G_CDS: -0.01 Total: -31.09 kcal Atomic # 8 Polarization: -3.70 SS G_CDS: -0.20 Total: -3.90 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -28.43 -11.45 -39.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543185624.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.079 kcal (2) G-P(sol) polarization free energy of solvation -28.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds