Wall clock time and date at job start Tue Mar 31 2020 16:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00279 * 2 1 4 4 H 1.48504 * 109.47460 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47294 * 299.99905 * 3 2 1 6 6 H 1.48501 * 109.47425 * 59.99837 * 3 2 1 7 7 C 1.37882 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00222 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99781 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46663 * 179.97438 * 9 7 2 11 11 C 1.53121 * 109.51847 * 185.00400 * 10 9 7 12 12 C 1.53038 * 109.27565 * 182.38008 * 11 10 9 13 13 N 1.46839 * 109.52806 * 59.17322 * 12 11 10 14 14 C 1.46898 * 111.00172 * 174.16079 * 13 12 11 15 15 C 1.50706 * 109.47207 * 170.00228 * 14 13 12 16 16 C 1.39922 * 126.03168 * 90.02309 * 15 14 13 17 17 N 1.30878 * 108.23923 * 179.74903 * 16 15 14 18 18 N 1.40083 * 108.21988 * 0.22993 * 17 16 15 19 19 C 1.40188 * 126.05551 * 179.97438 * 18 17 16 20 20 C 1.38837 * 120.06758 * 179.70039 * 19 18 17 21 21 C 1.38118 * 119.92955 * 179.74685 * 20 19 18 22 22 C 1.38280 * 120.06848 * 0.53285 * 21 20 19 23 23 C 1.38282 * 120.13386 * 359.73951 * 22 21 20 24 24 C 1.38119 * 120.06559 * 359.97438 * 23 22 21 25 25 C 1.35222 * 107.89246 * 0.02562 * 18 17 16 26 26 C 1.46848 * 111.20185 * 298.26277 * 13 12 11 27 27 C 1.53034 * 109.52344 * 61.73679 * 26 13 12 28 28 H 0.96998 * 119.99928 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47103 * 60.00520 * 9 7 2 30 30 H 1.09000 * 109.47233 * 299.99918 * 9 7 2 31 31 H 1.08994 * 109.52232 * 305.12327 * 10 9 7 32 32 H 1.08994 * 109.50917 * 62.43165 * 11 10 9 33 33 H 1.08997 * 109.53548 * 302.33308 * 11 10 9 34 34 H 1.09002 * 109.46324 * 299.15723 * 12 11 10 35 35 H 1.08998 * 109.45425 * 179.18711 * 12 11 10 36 36 H 1.08996 * 109.47141 * 50.00024 * 14 13 12 37 37 H 1.09002 * 109.47179 * 289.99680 * 14 13 12 38 38 H 1.08002 * 125.88398 * 0.02562 * 16 15 14 39 39 H 1.07998 * 120.03216 * 359.97438 * 20 19 18 40 40 H 1.08003 * 119.96365 * 180.29590 * 21 20 19 41 41 H 1.08005 * 119.93295 * 179.76800 * 22 21 20 42 42 H 1.07995 * 119.96403 * 179.97438 * 23 22 21 43 43 H 1.07997 * 120.03303 * 180.02562 * 24 23 22 44 44 H 1.08003 * 126.14751 * 180.02562 * 25 18 17 45 45 H 1.09000 * 109.46705 * 181.75664 * 26 13 12 46 46 H 1.09004 * 109.45395 * 301.72440 * 26 13 12 47 47 H 1.08997 * 109.50409 * 180.88353 * 27 26 13 48 48 H 1.09001 * 109.50148 * 60.76389 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4849 -4.9853 -0.1254 12 6 2.4792 -6.1470 -0.0651 13 7 3.2109 -6.1013 1.2072 14 6 4.0751 -7.2793 1.3602 15 6 4.9860 -7.0838 2.5448 16 6 4.7108 -7.4569 3.8650 17 7 5.7393 -7.1305 4.6057 18 7 6.7013 -6.5335 3.7808 19 6 7.9491 -6.0428 4.1900 20 6 8.8129 -5.4778 3.2615 21 6 10.0395 -4.9905 3.6687 22 6 10.4120 -5.0749 4.9976 23 6 9.5562 -5.6423 5.9238 24 6 8.3259 -6.1260 5.5238 25 6 6.2127 -6.5133 2.5201 26 6 3.9863 -4.8603 1.3297 27 6 3.0370 -3.6601 1.3111 28 1 -0.4850 0.8400 0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6239 -2.5567 0.8903 31 1 2.9311 -3.5549 -0.8397 32 1 0.9530 -5.0104 -1.0764 33 1 0.7709 -5.0746 0.6933 34 1 3.1841 -6.0651 -0.8925 35 1 1.9395 -7.0910 -0.1399 36 1 4.6741 -7.4100 0.4590 37 1 3.4586 -8.1642 1.5182 38 1 3.8074 -7.9362 4.2122 39 1 8.5245 -5.4160 2.2226 40 1 10.7098 -4.5465 2.9476 41 1 11.3732 -4.6966 5.3130 42 1 9.8501 -5.7072 6.9610 43 1 7.6577 -6.5686 6.2476 44 1 6.7138 -6.1178 1.6490 45 1 4.5414 -4.8698 2.2677 46 1 4.6841 -4.7844 0.4957 47 1 3.6141 -2.7385 1.3862 48 1 2.3478 -3.7283 2.1528 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564208581.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:42 Heat of formation + Delta-G solvation = 99.725132 kcal Electronic energy + Delta-G solvation = -26782.209309 eV Core-core repulsion = 23224.136657 eV Total energy + Delta-G solvation = -3558.072652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.83353 -39.35615 -38.53473 -34.89461 -33.63778 -32.40234 -31.54297 -30.73679 -30.04900 -29.54389 -27.82586 -25.47671 -23.65916 -23.41829 -22.85657 -22.35817 -21.02958 -20.57159 -19.98207 -18.86750 -18.19686 -16.46946 -16.24851 -15.92345 -15.56234 -15.17888 -15.01846 -14.63507 -14.44356 -14.25927 -14.11000 -13.88535 -13.49342 -13.22046 -13.11254 -13.02044 -12.56156 -12.33491 -12.03355 -11.87381 -11.76550 -11.64845 -11.45322 -11.09166 -10.78133 -10.73356 -10.59917 -10.58280 -10.50554 -10.21634 -9.90380 -9.50668 -9.40035 -9.19744 -8.97090 -8.82832 -8.31141 -8.26059 -7.93271 -5.94883 -3.95956 0.54554 0.95368 1.94742 2.16598 2.56086 3.32855 3.40467 3.43912 3.44397 4.15626 4.32400 4.44123 4.49544 4.58852 4.62816 4.76788 4.96498 4.98336 5.08788 5.15238 5.35172 5.39747 5.40708 5.42661 5.53214 5.60653 5.62316 5.66311 5.80497 5.91782 5.96309 5.97078 6.00904 6.03980 6.10975 6.19284 6.30476 6.36695 6.45773 6.49696 6.64192 6.72950 6.93981 7.03434 7.15789 7.24990 7.39652 7.45319 7.46025 7.74245 7.91475 8.06552 8.49815 9.10881 9.67295 11.16570 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.011020 B = 0.002957 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.298500 B = 9467.871996 C =11386.112723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.112 4.112 12 C 0.060 3.940 13 N -0.532 5.532 14 C 0.130 3.870 15 C -0.212 4.212 16 C 0.080 3.920 17 N -0.293 5.293 18 N -0.325 5.325 19 C 0.166 3.834 20 C -0.143 4.143 21 C -0.091 4.091 22 C -0.134 4.134 23 C -0.096 4.096 24 C -0.122 4.122 25 C 0.059 3.941 26 C 0.056 3.944 27 C -0.099 4.099 28 H 0.259 0.741 29 H 0.014 0.986 30 H 0.016 0.984 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.027 0.973 35 H 0.066 0.934 36 H 0.036 0.964 37 H 0.082 0.918 38 H 0.191 0.809 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.137 0.863 44 H 0.173 0.827 45 H 0.067 0.933 46 H 0.022 0.978 47 H 0.069 0.931 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.102 -16.868 7.089 25.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.099 4.099 11 C -0.150 4.150 12 C -0.068 4.068 13 N -0.257 5.257 14 C 0.002 3.998 15 C -0.223 4.223 16 C -0.108 4.108 17 N -0.112 5.112 18 N -0.100 5.100 19 C 0.074 3.926 20 C -0.164 4.164 21 C -0.110 4.110 22 C -0.153 4.153 23 C -0.114 4.114 24 C -0.142 4.142 25 C -0.084 4.084 26 C -0.071 4.071 27 C -0.137 4.137 28 H 0.068 0.932 29 H 0.032 0.968 30 H 0.035 0.965 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.045 0.955 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.101 0.899 38 H 0.208 0.792 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.145 0.855 42 H 0.149 0.851 43 H 0.155 0.845 44 H 0.190 0.810 45 H 0.085 0.915 46 H 0.040 0.960 47 H 0.088 0.912 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 18.147 -16.743 8.647 26.162 hybrid contribution 0.604 1.103 -1.542 1.990 sum 18.751 -15.640 7.105 25.430 Atomic orbital electron populations 1.69976 1.06002 1.26298 1.51309 1.25019 0.94796 0.99109 0.95613 0.86612 0.80124 0.84190 0.77526 1.19842 1.21110 1.21089 1.21295 0.92917 0.91061 1.49796 0.92737 1.19121 0.93647 0.91083 0.97089 1.21227 0.97836 0.94791 0.96076 1.21685 0.97550 0.94257 1.01464 1.22103 0.96339 0.99444 0.88866 1.62062 1.27620 1.01616 1.34369 1.20378 0.92473 0.94357 0.92605 1.20047 0.96019 1.09750 0.96485 1.23982 0.97254 0.98115 0.91445 1.77434 0.98954 1.17133 1.17634 1.45740 1.12665 1.45625 1.05924 1.17587 0.82663 0.97984 0.94381 1.20858 0.94667 1.01671 0.99200 1.20988 0.95350 0.98281 0.96395 1.21234 1.00234 1.00490 0.93296 1.21082 0.93095 0.97214 1.00044 1.20920 0.97607 1.01674 0.94000 1.22392 0.95927 1.01337 0.88787 1.22247 0.95360 0.89948 0.99583 1.21533 0.97851 0.95498 0.98786 0.93177 0.96789 0.96522 0.93182 0.92173 0.91579 0.95475 0.91552 0.94612 0.89925 0.79239 0.85247 0.84984 0.85461 0.85125 0.84476 0.80952 0.91458 0.95999 0.91236 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.51 -14.45 8.45 -34.44 -0.29 -14.74 16 8 H 0.05 1.50 7.08 -52.49 -0.37 1.13 16 9 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 10 C -0.08 -1.66 2.20 -90.49 -0.20 -1.86 16 11 C -0.11 -1.94 5.38 -26.65 -0.14 -2.08 16 12 C 0.06 0.86 5.42 -3.84 -0.02 0.84 16 13 N -0.53 -7.60 4.80 -236.12 -1.13 -8.73 16 14 C 0.13 1.48 5.76 -4.97 -0.03 1.46 16 15 C -0.21 -2.50 4.26 -105.03 -0.45 -2.94 16 16 C 0.08 0.95 11.96 -17.33 -0.21 0.74 16 17 N -0.29 -3.92 11.87 30.64 0.36 -3.55 16 18 N -0.32 -4.06 3.80 -10.70 -0.04 -4.10 16 19 C 0.17 1.88 6.69 -83.59 -0.56 1.32 16 20 C -0.14 -1.33 9.46 -39.40 -0.37 -1.71 16 21 C -0.09 -0.71 10.04 -39.61 -0.40 -1.10 16 22 C -0.13 -0.98 10.04 -39.55 -0.40 -1.37 16 23 C -0.10 -0.77 10.04 -39.61 -0.40 -1.17 16 24 C -0.12 -1.26 9.66 -39.40 -0.38 -1.64 16 25 C 0.06 0.67 9.05 -17.10 -0.15 0.52 16 26 C 0.06 0.88 4.75 -3.84 -0.02 0.87 16 27 C -0.10 -1.92 5.15 -26.65 -0.14 -2.05 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 36 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.19 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.13 1.02 6.74 -52.49 -0.35 0.66 16 40 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 41 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 42 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.14 1.44 7.70 -52.49 -0.40 1.04 16 44 H 0.17 1.59 7.04 -52.48 -0.37 1.23 16 45 H 0.07 1.06 5.65 -51.93 -0.29 0.77 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.07 1.45 7.06 -51.93 -0.37 1.08 16 48 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 384.12 15.07 5.79 5.79 Total: -1.00 -32.48 384.12 -11.31 -43.79 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -7.63 Total: -0.71 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -4.37 Total: -22.84 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: -0.07 Total: -42.88 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.48 -11.31 -43.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564208581.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.518 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds