Wall clock time and date at job start Tue Mar 31 2020 16:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00279 * 2 1 4 4 H 1.48504 * 109.47460 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47294 * 299.99905 * 3 2 1 6 6 H 1.48501 * 109.47425 * 59.99837 * 3 2 1 7 7 C 1.37882 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00222 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99781 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46663 * 179.97438 * 9 7 2 11 11 C 1.53121 * 109.51847 * 185.00400 * 10 9 7 12 12 C 1.53038 * 109.27565 * 182.38008 * 11 10 9 13 13 N 1.46839 * 109.52806 * 59.17322 * 12 11 10 14 14 C 1.46898 * 111.00172 * 174.16079 * 13 12 11 15 15 C 1.50706 * 109.47207 * 170.00228 * 14 13 12 16 16 C 1.39922 * 126.03168 * 90.02309 * 15 14 13 17 17 N 1.30878 * 108.23923 * 179.74903 * 16 15 14 18 18 N 1.40083 * 108.21988 * 0.22993 * 17 16 15 19 19 C 1.40188 * 126.05551 * 179.97438 * 18 17 16 20 20 C 1.38837 * 120.06758 * 179.70039 * 19 18 17 21 21 C 1.38118 * 119.92955 * 179.74685 * 20 19 18 22 22 C 1.38280 * 120.06848 * 0.53285 * 21 20 19 23 23 C 1.38282 * 120.13386 * 359.73951 * 22 21 20 24 24 C 1.38119 * 120.06559 * 359.97438 * 23 22 21 25 25 C 1.35222 * 107.89246 * 0.02562 * 18 17 16 26 26 C 1.46848 * 111.20185 * 298.26277 * 13 12 11 27 27 C 1.53034 * 109.52344 * 61.73679 * 26 13 12 28 28 H 0.96998 * 119.99928 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47103 * 60.00520 * 9 7 2 30 30 H 1.09000 * 109.47233 * 299.99918 * 9 7 2 31 31 H 1.08994 * 109.52232 * 305.12327 * 10 9 7 32 32 H 1.08994 * 109.50917 * 62.43165 * 11 10 9 33 33 H 1.08997 * 109.53548 * 302.33308 * 11 10 9 34 34 H 1.09002 * 109.46324 * 299.15723 * 12 11 10 35 35 H 1.08998 * 109.45425 * 179.18711 * 12 11 10 36 36 H 1.08996 * 109.47141 * 50.00024 * 14 13 12 37 37 H 1.09002 * 109.47179 * 289.99680 * 14 13 12 38 38 H 1.08002 * 125.88398 * 0.02562 * 16 15 14 39 39 H 1.07998 * 120.03216 * 359.97438 * 20 19 18 40 40 H 1.08003 * 119.96365 * 180.29590 * 21 20 19 41 41 H 1.08005 * 119.93295 * 179.76800 * 22 21 20 42 42 H 1.07995 * 119.96403 * 179.97438 * 23 22 21 43 43 H 1.07997 * 120.03303 * 180.02562 * 24 23 22 44 44 H 1.08003 * 126.14751 * 180.02562 * 25 18 17 45 45 H 1.09000 * 109.46705 * 181.75664 * 26 13 12 46 46 H 1.09004 * 109.45395 * 301.72440 * 26 13 12 47 47 H 1.08997 * 109.50409 * 180.88353 * 27 26 13 48 48 H 1.09001 * 109.50148 * 60.76389 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4849 -4.9853 -0.1254 12 6 2.4792 -6.1470 -0.0651 13 7 3.2109 -6.1013 1.2072 14 6 4.0751 -7.2793 1.3602 15 6 4.9860 -7.0838 2.5448 16 6 4.7108 -7.4569 3.8650 17 7 5.7393 -7.1305 4.6057 18 7 6.7013 -6.5335 3.7808 19 6 7.9491 -6.0428 4.1900 20 6 8.8129 -5.4778 3.2615 21 6 10.0395 -4.9905 3.6687 22 6 10.4120 -5.0749 4.9976 23 6 9.5562 -5.6423 5.9238 24 6 8.3259 -6.1260 5.5238 25 6 6.2127 -6.5133 2.5201 26 6 3.9863 -4.8603 1.3297 27 6 3.0370 -3.6601 1.3111 28 1 -0.4850 0.8400 0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6239 -2.5567 0.8903 31 1 2.9311 -3.5549 -0.8397 32 1 0.9530 -5.0104 -1.0764 33 1 0.7709 -5.0746 0.6933 34 1 3.1841 -6.0651 -0.8925 35 1 1.9395 -7.0910 -0.1399 36 1 4.6741 -7.4100 0.4590 37 1 3.4586 -8.1642 1.5182 38 1 3.8074 -7.9362 4.2122 39 1 8.5245 -5.4160 2.2226 40 1 10.7098 -4.5465 2.9476 41 1 11.3732 -4.6966 5.3130 42 1 9.8501 -5.7072 6.9610 43 1 7.6577 -6.5686 6.2476 44 1 6.7138 -6.1178 1.6490 45 1 4.5414 -4.8698 2.2677 46 1 4.6841 -4.7844 0.4957 47 1 3.6141 -2.7385 1.3862 48 1 2.3478 -3.7283 2.1528 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564208581.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:41 Heat of formation + Delta-G solvation = 82.081661 kcal Electronic energy + Delta-G solvation = -26782.974387 eV Core-core repulsion = 23224.136657 eV Total energy + Delta-G solvation = -3558.837730 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.67736 -40.16696 -39.69549 -36.37450 -34.74439 -34.09602 -32.35411 -31.84835 -31.29717 -30.42128 -29.35274 -26.83182 -25.07584 -24.25395 -24.02978 -23.44873 -22.21549 -21.70263 -20.84204 -20.38506 -18.98535 -18.43151 -17.14796 -17.01550 -16.50659 -16.28727 -16.08637 -15.90887 -15.66373 -15.26912 -15.05620 -14.86214 -14.73708 -14.53315 -14.21371 -14.04697 -13.88576 -13.66608 -13.32331 -13.22986 -12.95540 -12.84120 -12.59722 -12.58794 -12.31560 -12.18056 -12.11497 -11.96561 -11.68901 -11.54131 -11.30573 -11.24461 -10.87897 -10.66896 -10.53104 -10.04537 -10.01580 -9.17277 -8.90418 -8.17741 -6.27128 -0.17697 0.31496 1.17063 1.37831 1.38391 1.38441 1.51093 1.68089 2.40924 2.78513 3.14812 3.20761 3.43054 3.73530 3.92708 3.93946 4.01675 4.09354 4.12707 4.19741 4.23124 4.33387 4.41351 4.41936 4.46881 4.60271 4.68498 4.69657 4.73426 4.80574 4.84880 4.89274 5.00010 5.00935 5.09253 5.17731 5.18738 5.27051 5.36565 5.40990 5.44476 5.45978 5.49008 5.59139 5.62150 5.77839 5.82501 5.90575 6.17411 6.23994 6.30200 6.34306 6.59444 6.89383 7.41068 8.94464 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.011020 B = 0.002957 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.298500 B = 9467.871996 C =11386.112723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.960 3.040 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.073 4.073 11 C -0.108 4.108 12 C 0.068 3.932 13 N -0.543 5.543 14 C 0.137 3.863 15 C -0.223 4.223 16 C 0.072 3.928 17 N -0.326 5.326 18 N -0.330 5.330 19 C 0.133 3.867 20 C -0.151 4.151 21 C -0.093 4.093 22 C -0.130 4.130 23 C -0.098 4.098 24 C -0.142 4.142 25 C 0.056 3.944 26 C 0.073 3.927 27 C -0.093 4.093 28 H 0.262 0.738 29 H -0.013 1.013 30 H -0.015 1.015 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.037 0.963 35 H 0.095 0.905 36 H 0.051 0.949 37 H 0.101 0.899 38 H 0.209 0.791 39 H 0.141 0.859 40 H 0.159 0.841 41 H 0.157 0.843 42 H 0.152 0.848 43 H 0.124 0.876 44 H 0.193 0.807 45 H 0.068 0.932 46 H 0.032 0.968 47 H 0.048 0.952 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.852 -17.349 6.549 27.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.784 3.216 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.207 1.207 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.004 4.004 10 C -0.091 4.091 11 C -0.146 4.146 12 C -0.059 4.059 13 N -0.269 5.269 14 C 0.009 3.991 15 C -0.234 4.234 16 C -0.114 4.114 17 N -0.144 5.144 18 N -0.105 5.105 19 C 0.042 3.958 20 C -0.171 4.171 21 C -0.111 4.111 22 C -0.148 4.148 23 C -0.116 4.116 24 C -0.162 4.162 25 C -0.087 4.087 26 C -0.055 4.055 27 C -0.131 4.131 28 H 0.070 0.930 29 H 0.006 0.994 30 H 0.003 0.997 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.113 0.887 36 H 0.069 0.931 37 H 0.119 0.881 38 H 0.225 0.775 39 H 0.159 0.841 40 H 0.177 0.823 41 H 0.174 0.826 42 H 0.170 0.830 43 H 0.142 0.858 44 H 0.210 0.790 45 H 0.086 0.914 46 H 0.051 0.949 47 H 0.067 0.933 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 20.917 -17.243 8.113 28.296 hybrid contribution -0.221 1.271 -1.328 1.851 sum 20.696 -15.973 6.785 27.009 Atomic orbital electron populations 1.70112 1.07775 1.27461 1.52314 1.25963 0.95713 1.03224 0.95150 0.85478 0.79177 0.79197 0.77701 1.18559 1.20321 1.20660 1.21681 0.93311 0.92198 1.49381 0.92306 1.19018 0.94052 0.93144 0.94186 1.21070 0.96838 0.94519 0.96704 1.21606 0.97944 0.93874 1.01161 1.22027 0.95847 0.98891 0.89165 1.61999 1.28396 1.01920 1.34562 1.20415 0.92423 0.93308 0.92952 1.20148 0.96331 1.10389 0.96531 1.24378 0.97524 0.97846 0.91697 1.77384 0.99827 1.18367 1.18867 1.45902 1.12958 1.45498 1.06144 1.17970 0.82908 0.99661 0.95309 1.21115 0.95023 1.01492 0.99509 1.21387 0.94999 0.97461 0.97276 1.21640 1.01039 0.99180 0.92987 1.21387 0.92258 0.96516 1.01488 1.21010 0.98630 1.02760 0.93761 1.22793 0.96053 1.00789 0.89098 1.21968 0.94332 0.89142 1.00060 1.21402 0.97798 0.96776 0.97171 0.92957 0.99417 0.99700 0.93226 0.91816 0.92887 0.94483 0.88721 0.93083 0.88099 0.77478 0.84129 0.82342 0.82556 0.82993 0.85803 0.78974 0.91410 0.94946 0.93290 0.94044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.35 13.29 21.45 0.28 -58.07 16 2 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 3 Si 0.96 45.21 29.54 68.60 2.03 47.23 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 7 C -0.53 -30.46 8.45 25.60 0.22 -30.25 16 8 H 0.06 3.27 7.08 -2.91 -0.02 3.25 16 9 C 0.03 1.79 4.45 29.85 0.13 1.92 16 10 C -0.07 -3.04 2.20 -10.71 -0.02 -3.06 16 11 C -0.11 -3.70 5.38 30.65 0.16 -3.53 16 12 C 0.07 1.76 5.42 86.33 0.47 2.23 16 13 N -0.54 -14.36 4.80 -900.94 -4.32 -18.69 16 14 C 0.14 2.71 5.76 85.56 0.49 3.20 16 15 C -0.22 -4.89 4.26 -20.13 -0.09 -4.98 16 16 C 0.07 1.68 11.96 85.24 1.02 2.70 16 17 N -0.33 -8.80 11.87 -56.97 -0.68 -9.47 16 18 N -0.33 -8.20 3.80 -187.76 -0.71 -8.91 16 19 C 0.13 2.98 6.69 38.09 0.25 3.24 16 20 C -0.15 -2.60 9.46 22.38 0.21 -2.38 16 21 C -0.09 -1.20 10.04 22.25 0.22 -0.97 16 22 C -0.13 -1.56 10.04 22.29 0.22 -1.33 16 23 C -0.10 -1.44 10.04 22.25 0.22 -1.22 16 24 C -0.14 -2.94 9.66 22.39 0.22 -2.73 16 25 C 0.06 1.22 9.05 83.50 0.76 1.97 16 26 C 0.07 2.20 4.75 86.32 0.41 2.61 16 27 C -0.09 -3.68 5.15 30.64 0.16 -3.52 16 28 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 29 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 30 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 31 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.09 1.98 8.12 -2.39 -0.02 1.96 16 36 H 0.05 0.89 8.08 -2.39 -0.02 0.87 16 37 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.21 3.69 8.06 -2.91 -0.02 3.67 16 39 H 0.14 1.96 6.74 -2.91 -0.02 1.94 16 40 H 0.16 1.15 8.06 -2.91 -0.02 1.12 16 41 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 42 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 43 H 0.12 2.78 7.70 -2.91 -0.02 2.76 16 44 H 0.19 3.15 7.04 -2.91 -0.02 3.13 16 45 H 0.07 2.07 5.65 -2.39 -0.01 2.06 16 46 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.05 2.08 7.06 -2.39 -0.02 2.06 16 48 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -72.81 384.12 3.05 -69.76 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.93 Total: 13.99 kcal Atomic # 6 Polarization: -41.36 SS G_CDS: 5.52 Total: -35.84 kcal Atomic # 7 Polarization: -89.71 SS G_CDS: -5.43 Total: -95.14 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -72.81 3.05 -69.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564208581.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.838 kcal (2) G-P(sol) polarization free energy of solvation -72.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds