Wall clock time and date at job start Tue Mar 31 2020 14:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46506 * 120.00086 * 2 1 4 4 C 1.50696 * 109.46958 * 269.99613 * 3 2 1 5 5 C 1.39370 * 119.51084 * 270.28890 * 4 3 2 6 6 C 1.36098 * 120.99091 * 180.28202 * 5 4 3 7 7 C 1.40536 * 119.65063 * 359.71066 * 6 5 4 8 8 C 1.40540 * 121.28217 * 180.02562 * 7 6 5 9 9 C 1.36091 * 119.65665 * 180.02562 * 8 7 6 10 10 C 1.39376 * 120.98533 * 359.95297 * 9 8 7 11 11 C 1.36089 * 120.99181 * 0.02562 * 10 9 8 12 12 C 1.40540 * 119.65387 * 0.02562 * 11 10 9 13 13 C 1.36095 * 119.49925 * 90.00192 * 4 3 2 14 14 C 1.34779 * 120.00141 * 180.02562 * 2 1 3 15 15 O 1.21279 * 120.00239 * 180.02562 * 14 2 1 16 16 C 1.50695 * 119.99891 * 359.97438 * 14 2 1 17 17 C 1.52998 * 109.47593 * 180.02562 * 16 14 2 18 18 C 1.52994 * 109.47384 * 180.02562 * 17 16 14 19 19 C 1.53005 * 109.47215 * 179.97438 * 18 17 16 20 20 C 1.50695 * 109.47424 * 179.97438 * 19 18 17 21 21 H 1.08002 * 120.00123 * 0.02562 * 20 19 18 22 22 C 1.37879 * 120.00321 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99702 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00327 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46665 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46903 * 120.00029 * 24 22 20 27 27 H 1.48491 * 109.47395 * 240.00636 * 24 22 20 28 28 H 1.08997 * 109.47332 * 89.99742 * 1 2 3 29 29 H 1.09001 * 109.47515 * 210.00168 * 1 2 3 30 30 H 1.09009 * 109.47052 * 330.00251 * 1 2 3 31 31 H 1.09006 * 109.46805 * 149.99919 * 3 2 1 32 32 H 1.09000 * 109.47076 * 30.00439 * 3 2 1 33 33 H 1.07998 * 119.50525 * 359.97438 * 5 4 3 34 34 H 1.07997 * 120.17524 * 179.73800 * 6 5 4 35 35 H 1.08002 * 120.17303 * 0.02639 * 8 7 6 36 36 H 1.07998 * 119.50902 * 179.97438 * 9 8 7 37 37 H 1.08007 * 119.50474 * 180.02562 * 10 9 8 38 38 H 1.07997 * 120.17251 * 180.02562 * 11 10 9 39 39 H 1.08002 * 120.17715 * 0.02562 * 13 4 3 40 40 H 1.09000 * 109.47408 * 300.00602 * 16 14 2 41 41 H 1.09004 * 109.47264 * 60.00063 * 16 14 2 42 42 H 1.09005 * 109.46612 * 300.00403 * 17 16 14 43 43 H 1.09004 * 109.46968 * 59.99632 * 17 16 14 44 44 H 1.08996 * 109.47522 * 299.99466 * 18 17 16 45 45 H 1.09003 * 109.47395 * 60.00356 * 18 17 16 46 46 H 1.09000 * 109.47273 * 300.00489 * 19 18 17 47 47 H 1.09004 * 109.46895 * 59.99641 * 19 18 17 48 48 H 0.96992 * 119.99711 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 6 3.6106 1.2904 -2.0700 6 6 3.8705 1.6700 -3.3509 7 6 2.9527 2.4861 -4.0340 8 6 3.1863 2.8978 -5.3573 9 6 2.2752 3.6886 -5.9872 10 6 1.1104 4.0971 -5.3400 11 6 0.8505 3.7176 -4.0592 12 6 1.7686 2.9020 -3.3757 13 6 1.5346 2.4894 -2.0527 14 6 2.1388 -1.1672 -0.0005 15 8 3.3516 -1.1672 -0.0001 16 6 1.3854 -2.4723 -0.0005 17 6 2.3795 -3.6352 -0.0005 18 6 1.6145 -4.9602 -0.0012 19 6 2.6087 -6.1232 -0.0018 20 6 1.8552 -7.4282 -0.0018 21 1 0.7752 -7.4283 -0.0018 22 6 2.5446 -8.6223 -0.0029 23 7 3.8598 -8.6223 -0.0034 24 14 1.6106 -10.2401 -0.0036 25 1 0.1506 -9.9686 -0.0035 26 1 1.9689 -11.0179 -1.2168 27 1 1.9696 -11.0196 1.2082 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8901 0.5138 31 1 3.1499 1.1384 0.5139 32 1 1.6084 2.0284 0.5139 33 1 4.3178 0.6635 -1.5472 34 1 4.7771 1.3455 -3.8399 35 1 4.0842 2.5884 -5.8716 36 1 2.4574 4.0040 -7.0039 37 1 0.4034 4.7243 -5.8628 38 1 -0.0565 4.0415 -3.5705 39 1 0.6366 2.7986 -1.5385 40 1 0.7590 -2.5302 0.8896 41 1 0.7583 -2.5298 -0.8903 42 1 3.0062 -3.5774 -0.8905 43 1 3.0062 -3.5775 0.8895 44 1 0.9876 -5.0183 0.8886 45 1 0.9881 -5.0177 -0.8914 46 1 3.2354 -6.0650 -0.8917 47 1 3.2354 -6.0659 0.8882 48 1 4.3447 -9.4623 -0.0045 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588254031.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:28 Heat of formation + Delta-G solvation = -16.231110 kcal Electronic energy + Delta-G solvation = -25947.678062 eV Core-core repulsion = 22352.284419 eV Total energy + Delta-G solvation = -3595.393643 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.75052 -39.79778 -37.17316 -35.45606 -34.86840 -33.05450 -32.62340 -31.38642 -29.82893 -29.46542 -27.53691 -26.43165 -25.00451 -23.56393 -22.66508 -22.18054 -21.72045 -19.99219 -19.07163 -17.61745 -17.24202 -16.90614 -16.42613 -16.18323 -16.06127 -15.57961 -14.99965 -14.68037 -14.43789 -14.23180 -13.87309 -13.71052 -13.55443 -13.41902 -13.20870 -12.89665 -12.71507 -12.58905 -12.34936 -12.04424 -11.88266 -11.61319 -11.53246 -11.47518 -11.28448 -11.04934 -10.97924 -10.50921 -10.46677 -10.38013 -10.23163 -9.77367 -9.58957 -9.21081 -8.96408 -8.87785 -8.73171 -8.29198 -8.13374 -5.93819 -3.96121 0.27815 0.74784 1.80111 2.59696 2.72998 3.10473 3.34073 3.41165 3.45191 3.90439 4.28889 4.47694 4.50052 4.53688 4.60142 4.71697 4.80937 4.89038 4.92057 4.99222 5.11331 5.16362 5.24404 5.26134 5.35104 5.40457 5.41755 5.45951 5.47583 5.55324 5.70042 5.82971 5.88184 5.98862 6.02395 6.16624 6.18944 6.27087 6.36128 6.36719 6.40175 6.57568 6.58401 6.77482 6.86754 7.03888 7.21188 7.29110 7.76267 7.92251 8.07919 8.22489 8.49826 9.11845 9.67413 11.17555 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.017291 B = 0.002016 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.992300 B =13887.367831 C =14454.978168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.620 5.620 3 C 0.152 3.848 4 C -0.096 4.096 5 C -0.091 4.091 6 C -0.111 4.111 7 C -0.049 4.049 8 C -0.106 4.106 9 C -0.120 4.120 10 C -0.121 4.121 11 C -0.105 4.105 12 C -0.054 4.054 13 C -0.096 4.096 14 C 0.515 3.485 15 O -0.531 6.531 16 C -0.137 4.137 17 C -0.103 4.103 18 C -0.110 4.110 19 C 0.019 3.981 20 C -0.519 4.519 21 H 0.055 0.945 22 C 0.054 3.946 23 N -0.895 5.895 24 Si 0.891 3.109 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.016 0.984 47 H 0.016 0.984 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.356 30.426 -6.452 31.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.355 5.355 3 C 0.030 3.970 4 C -0.097 4.097 5 C -0.110 4.110 6 C -0.128 4.128 7 C -0.049 4.049 8 C -0.123 4.123 9 C -0.138 4.138 10 C -0.139 4.139 11 C -0.123 4.123 12 C -0.054 4.054 13 C -0.115 4.115 14 C 0.304 3.696 15 O -0.407 6.407 16 C -0.177 4.177 17 C -0.141 4.141 18 C -0.148 4.148 19 C -0.018 4.018 20 C -0.557 4.557 21 H 0.073 0.927 22 C -0.147 4.147 23 N -0.535 5.535 24 Si 0.719 3.281 25 H -0.198 1.198 26 H -0.211 1.211 27 H -0.211 1.211 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.560 30.288 -6.423 31.649 hybrid contribution -0.582 -0.904 -0.155 1.086 sum -7.142 29.384 -6.578 30.947 Atomic orbital electron populations 1.21823 0.79400 1.03325 1.01965 1.47990 1.06940 1.05553 1.75001 1.20386 0.98821 0.85314 0.92517 1.19993 0.94885 0.97642 0.97201 1.20979 0.96995 0.98138 0.94848 1.21070 0.99032 0.97780 0.94965 1.18150 0.94514 0.97963 0.94303 1.21070 0.99640 0.97917 0.93720 1.20849 0.94467 0.98372 1.00071 1.20836 0.97505 1.00392 0.95156 1.21009 0.98665 0.97625 0.95020 1.18060 0.94628 0.98449 0.94311 1.20868 0.98789 0.98255 0.93563 1.21120 0.88279 0.85403 0.74777 1.90671 1.14115 1.87252 1.48627 1.21824 1.00097 0.92025 1.03727 1.21455 0.97022 0.92716 1.02893 1.21645 0.99069 0.94032 1.00018 1.19101 0.94068 0.91288 0.97302 1.21322 0.93011 0.91192 1.50178 0.92714 1.25054 0.94853 0.99246 0.95517 1.69987 1.06033 1.26366 1.51077 0.86554 0.80077 0.83939 0.77530 1.19789 1.21063 1.21065 0.92653 0.90400 0.91225 0.88862 0.89814 0.85014 0.85459 0.85594 0.86073 0.86101 0.85718 0.85763 0.89181 0.89272 0.91874 0.91815 0.93507 0.93530 0.96607 0.96591 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.56 10.28 59.84 0.62 1.17 16 2 N -0.62 -6.58 2.86 -182.96 -0.52 -7.10 16 3 C 0.15 1.46 5.54 -5.19 -0.03 1.43 16 4 C -0.10 -1.00 5.43 -104.97 -0.57 -1.57 16 5 C -0.09 -1.07 9.59 -39.93 -0.38 -1.46 16 6 C -0.11 -1.21 9.77 -39.48 -0.39 -1.59 16 7 C -0.05 -0.53 5.74 -106.84 -0.61 -1.14 16 8 C -0.11 -0.95 9.77 -39.49 -0.39 -1.34 16 9 C -0.12 -0.94 9.95 -39.93 -0.40 -1.34 16 10 C -0.12 -0.92 9.95 -39.93 -0.40 -1.32 16 11 C -0.11 -0.87 9.77 -39.49 -0.39 -1.25 16 12 C -0.05 -0.55 5.74 -106.83 -0.61 -1.16 16 13 C -0.10 -0.89 9.37 -39.48 -0.37 -1.26 16 14 C 0.51 7.30 7.67 -10.99 -0.08 7.22 16 15 O -0.53 -9.39 14.99 5.56 0.08 -9.31 16 16 C -0.14 -1.88 4.25 -27.89 -0.12 -2.00 16 17 C -0.10 -1.87 4.50 -26.74 -0.12 -1.99 16 18 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 19 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 20 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 21 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 22 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 23 N -0.90 -27.71 13.29 55.43 0.74 -26.97 16 24 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 25 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.51 6.44 -51.93 -0.33 0.18 16 30 H 0.07 0.34 7.89 -51.92 -0.41 -0.07 16 31 H 0.09 1.02 7.36 -51.93 -0.38 0.64 16 32 H 0.08 0.56 7.82 -51.93 -0.41 0.16 16 33 H 0.13 1.69 7.48 -52.49 -0.39 1.30 16 34 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.12 0.64 8.06 -52.48 -0.42 0.21 16 38 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 40 H 0.09 1.06 7.40 -51.93 -0.38 0.67 16 41 H 0.09 1.10 8.11 -51.93 -0.42 0.68 16 42 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 43 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 397.83 15.07 6.00 6.00 Total: -1.00 -34.80 397.83 -11.42 -46.22 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -7.76 Total: -2.32 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -4.92 Total: -23.55 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.21 Total: -34.08 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.31 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.80 -11.42 -46.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588254031.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.988 kcal (2) G-P(sol) polarization free energy of solvation -34.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds