Wall clock time and date at job start Tue Mar 31 2020 14:18:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 O 1.42901 * 109.47091 * 2 1
4 4 C 1.42905 * 114.00134 * 179.97438 * 3 2 1
5 5 C 1.50703 * 109.47264 * 179.97438 * 4 3 2
6 6 N 1.31129 * 126.54729 * 89.71240 * 5 4 3
7 7 C 1.34497 * 105.60849 * 179.91609 * 6 5 4
8 8 C 1.50703 * 126.28293 * 180.12449 * 7 6 5
9 9 H 1.09000 * 109.47612 * 345.24129 * 8 7 6
10 10 C 1.53007 * 109.46747 * 105.24343 * 8 7 6
11 11 N 1.46496 * 109.47140 * 225.23645 * 8 7 6
12 12 C 1.34776 * 120.00093 * 154.99954 * 11 8 7
13 13 O 1.21290 * 119.99816 * 0.02562 * 12 11 8
14 14 C 1.50701 * 120.00558 * 180.02562 * 12 11 8
15 15 C 1.52995 * 109.47618 * 180.02562 * 14 12 11
16 16 C 1.52995 * 109.47359 * 180.02562 * 15 14 12
17 17 C 1.53004 * 109.47284 * 180.02562 * 16 15 14
18 18 C 1.50695 * 109.47228 * 179.97438 * 17 16 15
19 19 H 1.08001 * 120.00023 * 0.02562 * 18 17 16
20 20 C 1.37874 * 119.99930 * 179.97438 * 18 17 16
21 21 N 1.31506 * 120.00486 * 0.02562 * 20 18 17
22 22 Si 1.86810 * 119.99794 * 180.02562 * 20 18 17
23 23 H 1.48499 * 109.47034 * 90.00238 * 22 20 18
24 24 H 1.48507 * 109.46632 * 210.00102 * 22 20 18
25 25 H 1.48502 * 109.47092 * 329.99765 * 22 20 18
26 26 N 1.29942 * 107.42634 * 0.35011 * 7 6 5
27 27 O 1.21295 * 110.25076 * 359.78187 * 26 7 6
28 28 H 1.09003 * 109.47090 * 59.99900 * 1 2 3
29 29 H 1.08996 * 109.47307 * 180.02562 * 1 2 3
30 30 H 1.09002 * 109.47184 * 300.00269 * 1 2 3
31 31 H 1.08994 * 109.47303 * 240.00013 * 2 1 3
32 32 H 1.09002 * 109.47060 * 119.99543 * 2 1 3
33 33 H 1.09001 * 109.47103 * 300.00246 * 4 3 2
34 34 H 1.09004 * 109.47054 * 59.99750 * 4 3 2
35 35 H 1.08998 * 109.47039 * 180.02562 * 10 8 7
36 36 H 1.09001 * 109.46733 * 299.99334 * 10 8 7
37 37 H 1.08997 * 109.47344 * 60.00066 * 10 8 7
38 38 H 0.97006 * 120.00520 * 335.00923 * 11 8 7
39 39 H 1.09005 * 109.47156 * 300.00694 * 14 12 11
40 40 H 1.09001 * 109.46373 * 60.00349 * 14 12 11
41 41 H 1.08999 * 109.47399 * 300.00935 * 15 14 12
42 42 H 1.09003 * 109.47172 * 60.00126 * 15 14 12
43 43 H 1.09005 * 109.47006 * 300.00338 * 16 15 14
44 44 H 1.08999 * 109.47519 * 60.00119 * 16 15 14
45 45 H 1.09004 * 109.46500 * 299.99952 * 17 16 15
46 46 H 1.08997 * 109.46976 * 59.99961 * 17 16 15
47 47 H 0.97000 * 120.00711 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.4309 1.4602 0.0006
5 6 3.8195 2.9162 -0.0001
6 7 4.0152 3.6727 1.0530
7 6 4.3435 4.8850 0.5718
8 6 4.6692 6.1098 1.3871
9 1 4.3517 5.9550 2.4183
10 6 6.1781 6.3606 1.3502
11 7 3.9679 7.2686 0.8289
12 6 3.6809 8.3253 1.6147
13 8 4.0036 8.3171 2.7838
14 6 2.9590 9.5172 1.0408
15 6 2.7595 10.5681 2.1346
16 6 2.0260 11.7778 1.5521
17 6 1.8271 12.8290 2.6459
18 6 1.1052 14.0208 2.0719
19 1 0.8167 14.0276 1.0312
20 6 0.8121 15.1020 2.8757
21 7 1.1629 15.0936 4.1430
22 14 -0.0834 16.5791 2.1643
23 1 -1.5487 16.3878 2.3118
24 1 0.3313 17.8063 2.8906
25 1 0.2554 16.7174 0.7250
26 7 4.3235 4.8073 -0.7252
27 8 4.0247 3.6847 -1.0740
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3634 -1.0276 0.0005
30 1 -0.3634 0.5139 0.8900
31 1 1.8933 -0.5138 -0.8899
32 1 1.8933 -0.5138 0.8900
33 1 3.8333 0.9767 0.8908
34 1 3.8340 0.9764 -0.8892
35 1 6.4137 7.2462 1.9402
36 1 6.6999 5.4984 1.7655
37 1 6.4956 6.5155 0.3190
38 1 3.7099 7.2754 -0.1062
39 1 3.5498 9.9443 0.2304
40 1 1.9884 9.2035 0.6565
41 1 2.1689 10.1413 2.9453
42 1 3.7302 10.8817 2.5186
43 1 2.6163 12.2048 0.7413
44 1 1.0552 11.4640 1.1684
45 1 1.2369 12.4022 3.4569
46 1 2.7980 13.1428 3.0291
47 1 0.9564 15.8541 4.7086
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000589628595.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:18:14
Heat of formation + Delta-G solvation = -37.270067 kcal
Electronic energy + Delta-G solvation = -26216.265645 eV
Core-core repulsion = 22209.110422 eV
Total energy + Delta-G solvation = -4007.155224 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 325.183 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-46.14881 -39.92462 -38.86993 -37.06955 -35.43490 -34.79633 -33.38986 -32.62662
-31.74427 -30.99408 -29.37084 -28.03861 -25.94926 -25.24776 -23.77365 -23.45638
-22.60363 -21.17211 -20.32118 -19.94851 -18.78341 -18.26103 -17.27444 -16.89644
-16.84809 -16.65694 -16.13609 -15.78820 -15.64285 -14.64719 -14.43169 -14.34823
-14.22336 -13.78730 -13.61583 -13.33626 -13.11097 -12.90572 -12.69420 -12.48583
-12.19463 -12.11739 -12.05168 -11.89856 -11.81072 -11.66867 -11.56827 -11.51681
-10.96083 -10.59852 -10.51664 -10.48367 -10.43966 -10.38516 -9.86974 -9.58908
-9.39128 -9.20067 -8.95776 -8.27882 -5.92612 -3.95072 0.49250 1.55890
2.09289 2.63666 2.72667 3.08204 3.28705 3.36038 3.41907 3.45289
3.57232 4.21171 4.36719 4.44802 4.51174 4.54220 4.58849 4.69950
4.74410 4.83258 4.96791 5.06358 5.09409 5.27446 5.32744 5.33864
5.38658 5.42817 5.43725 5.55025 5.58038 5.83336 5.87904 6.14596
6.16402 6.30916 6.32755 6.57345 6.86784 7.04472 7.22399 7.32006
7.60898 7.76973 7.93141 8.08821 8.16931 8.50788 9.12611 9.68466
11.18666
Molecular weight = 325.18amu
Principal moments of inertia in cm(-1)
A = 0.017608 B = 0.001688 C = 0.001598
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1589.762760 B =16579.470132 C =17522.208166
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.060 3.940
3 O -0.382 6.382
4 C 0.160 3.840
5 C 0.180 3.820
6 N -0.450 5.450
7 C 0.166 3.834
8 C 0.236 3.764
9 H 0.120 0.880
10 C -0.158 4.158
11 N -0.734 5.734
12 C 0.518 3.482
13 O -0.529 6.529
14 C -0.137 4.137
15 C -0.103 4.103
16 C -0.111 4.111
17 C 0.019 3.981
18 C -0.520 4.520
19 H 0.054 0.946
20 C 0.055 3.945
21 N -0.895 5.895
22 Si 0.891 3.109
23 H -0.281 1.281
24 H -0.287 1.287
25 H -0.274 1.274
26 N -0.367 5.367
27 O 0.094 5.906
28 H 0.065 0.935
29 H 0.076 0.924
30 H 0.066 0.934
31 H 0.056 0.944
32 H 0.057 0.943
33 H 0.101 0.899
34 H 0.092 0.908
35 H 0.082 0.918
36 H 0.070 0.930
37 H 0.063 0.937
38 H 0.404 0.596
39 H 0.093 0.907
40 H 0.092 0.908
41 H 0.064 0.936
42 H 0.064 0.936
43 H 0.047 0.953
44 H 0.047 0.953
45 H 0.016 0.984
46 H 0.016 0.984
47 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.847 -35.555 -12.031 38.154
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.016 4.016
3 O -0.301 6.301
4 C 0.081 3.919
5 C -0.041 4.041
6 N -0.185 5.185
7 C -0.107 4.107
8 C 0.129 3.871
9 H 0.138 0.862
10 C -0.217 4.217
11 N -0.389 5.389
12 C 0.306 3.694
13 O -0.404 6.404
14 C -0.177 4.177
15 C -0.141 4.141
16 C -0.148 4.148
17 C -0.018 4.018
18 C -0.559 4.559
19 H 0.072 0.928
20 C -0.146 4.146
21 N -0.534 5.534
22 Si 0.719 3.281
23 H -0.207 1.207
24 H -0.213 1.213
25 H -0.199 1.199
26 N -0.071 5.071
27 O 0.031 5.969
28 H 0.084 0.916
29 H 0.094 0.906
30 H 0.085 0.915
31 H 0.075 0.925
32 H 0.075 0.925
33 H 0.119 0.881
34 H 0.110 0.890
35 H 0.101 0.899
36 H 0.089 0.911
37 H 0.082 0.918
38 H 0.239 0.761
39 H 0.111 0.889
40 H 0.110 0.890
41 H 0.083 0.917
42 H 0.083 0.917
43 H 0.066 0.934
44 H 0.065 0.935
45 H 0.034 0.966
46 H 0.035 0.965
47 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges 7.138 -34.506 -11.083 36.938
hybrid contribution -0.534 0.401 -0.895 1.117
sum 6.604 -34.104 -11.978 36.745
Atomic orbital electron populations
1.21770 0.93014 1.02706 1.03651 1.22594 0.96170 0.82035 1.00829
1.87978 1.18223 1.28194 1.95666 1.20529 0.83912 0.83057 1.04369
1.28258 0.97402 0.97703 0.80749 1.71890 1.16621 1.01259 1.28740
1.25933 1.00588 0.95892 0.88307 1.19019 0.93661 0.77972 0.96425
0.86210 1.22185 0.92702 1.03612 1.03237 1.46158 1.61146 1.17190
1.14403 1.21169 0.78315 0.83601 0.86295 1.90720 1.52471 1.80534
1.16643 1.21807 1.00859 0.93674 1.01377 1.21462 1.01845 0.94473
0.96336 1.21654 0.98211 0.94981 0.99982 1.19099 0.96988 0.92346
0.93323 1.21289 1.36938 1.01461 0.96194 0.92756 1.25038 0.96067
0.98562 0.94887 1.69971 1.47214 1.30966 1.05287 0.86614 0.79976
0.82402 0.79104 1.20725 1.21257 1.19937 1.74605 1.18346 0.98662
1.15524 1.85315 1.61263 1.14748 1.35541 0.91574 0.90550 0.91512
0.92531 0.92502 0.88130 0.89006 0.89939 0.91148 0.91790 0.76132
0.88891 0.89018 0.91728 0.91684 0.93440 0.93468 0.96571 0.96547
0.93066
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.59 10.28 37.16 0.38 -0.20 16
2 C 0.06 0.21 6.66 37.16 0.25 0.46 16
3 O -0.38 -2.54 10.33 -35.23 -0.36 -2.91 16
4 C 0.16 0.72 6.56 36.01 0.24 0.95 16
5 C 0.18 1.51 8.14 -13.06 -0.11 1.40 16
6 N -0.45 -4.86 11.55 -9.88 -0.11 -4.97 16
7 C 0.17 1.84 7.01 -156.37 -1.10 0.74 16
8 C 0.24 2.66 3.12 -69.08 -0.22 2.44 16
9 H 0.12 1.51 7.58 -51.93 -0.39 1.12 16
10 C -0.16 -1.54 9.47 37.16 0.35 -1.19 16
11 N -0.73 -8.49 5.07 -54.93 -0.28 -8.77 16
12 C 0.52 7.46 7.79 -10.99 -0.09 7.37 16
13 O -0.53 -9.55 15.65 5.55 0.09 -9.47 16
14 C -0.14 -1.89 5.70 -27.89 -0.16 -2.05 16
15 C -0.10 -1.88 4.50 -26.74 -0.12 -2.00 16
16 C -0.11 -2.33 5.15 -26.73 -0.14 -2.47 16
17 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16
18 C -0.52 -15.23 9.11 -34.44 -0.31 -15.54 16
19 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16
20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16
21 N -0.89 -27.79 13.29 55.43 0.74 -27.05 16
22 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16
23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16
24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
25 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16
26 N -0.37 -3.93 11.86 30.89 0.37 -3.56 16
27 O 0.09 0.87 11.31 18.12 0.20 1.08 16
28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16
29 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16
30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
31 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16
32 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16
33 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16
34 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16
35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16
36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
38 H 0.40 4.01 8.36 -40.82 -0.34 3.67 16
39 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16
40 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16
41 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16
42 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16
43 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16
44 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16
45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16
LS Contribution 402.29 15.07 6.06 6.06
Total: -1.00 -35.93 402.29 -7.45 -43.39
By element:
Atomic # 1 Polarization: 5.09 SS G_CDS: -7.88 Total: -2.79 kcal
Atomic # 6 Polarization: -6.91 SS G_CDS: -1.25 Total: -8.16 kcal
Atomic # 7 Polarization: -45.07 SS G_CDS: 0.71 Total: -44.36 kcal
Atomic # 8 Polarization: -11.23 SS G_CDS: -0.07 Total: -11.30 kcal
Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal
Total LS contribution 6.06 Total: 6.06 kcal
Total: -35.93 -7.45 -43.39 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000589628595.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.118 kcal
(2) G-P(sol) polarization free energy of solvation -35.933 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.816 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.388 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.270 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds